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3430 Commits

Author SHA1 Message Date
Todd Gamblin
077848fc0b Merge pull request #378 from mathstuf/dep-types 
dependency types
 2016-07-15 00:29:16 -07:00
Todd Gamblin
f3e9588457 Fix package name bug. 2016-07-14 23:15:54 -07:00
Gregory Becker
487ec2aff1 added py-pydatalog package 2016-07-14 23:12:35 -07:00
Todd Gamblin
b8e2799700 Add GNU Prolog package. 2016-07-14 14:38:30 -07:00
Ben Boeckel
a0584c78a8 foam-extend, sundials: add cmake as a builddep 
The sundials doesn't use CMake directly, but it is referenced in the
patch step. I suspect it calls CMake somewhere else in its build system.
 2016-07-14 16:21:47 -04:00
Ben Boeckel
d71a12438b cantera: use nolink for python module dependencies 
Unsure about this, but this is probably true.
 2016-07-14 16:21:47 -04:00
Ben Boeckel
39aef5fc00 lua: bring in run deps of build and run deps 2016-07-14 16:21:47 -04:00
Ben Boeckel
a82385cdae R: look only at run dependencies of build and run deps 2016-07-14 16:21:46 -04:00
Ben Boeckel
0ca1a481a3 python: setup the dependent environment properly 
We want the run dependencies of all build and run dependencies of the
current package.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
ac1701ae29 msgpack-c: add missing dependency on cmake 2016-07-14 16:21:46 -04:00
Ben Boeckel
77965ce5bf py-matplotlib: require py-setuptools to build 2016-07-14 16:21:46 -04:00
Ben Boeckel
6fd45520da deptypes: mark deptypes in packages 2016-07-14 16:21:46 -04:00
Ben Boeckel
45c675fe7f spack: introduce dependency types 
deptypes: allow for different queries

For things like Python modules, they are required for the build and
runtime, but rather than adding a new parameter for what to query across
the dependency DAG, just expose the recursive query parameter.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
bdf82246f7 darwin: explicitly use the 'when=' kwarg 2016-07-14 16:21:45 -04:00
Ben Boeckel
1ae43b3405 doxygen: add missing import 2016-07-14 16:21:45 -04:00
Denis Davydov
668b4f1b2c mkl: set MKLROOT 2016-07-13 23:36:23 +02:00
Adam J. Stewart
3864da6300 Flake8 2016-07-13 11:45:16 -05:00
Adam J. Stewart
d09b0c95ec Filter both makefiles to allow intel to build bzip2 2016-07-13 11:45:16 -05:00
alalazo
7cedd620f1 package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples 2016-07-13 17:36:06 +02:00
Denis Davydov
de9cce3e80 p4est: flake8 2016-07-13 11:45:33 +02:00
Denis Davydov
52ca215e29 mkl: add provide blas/lapack 2016-07-13 11:42:40 +02:00
Denis Davydov
b8bd02c5b2 p4est: use run_tests instead of a variant 2016-07-13 10:56:40 +02:00
alalazo
5cc59507f7 package.py : hdf5 and lzo have examples of run_tests 2016-07-13 09:27:09 +02:00
alalazo
97c2224cd6 package.py : extra arguments, fixed inheritance issue 
- added attribute to hold extra arguments in PackageBase instances
- fixed registration from within packages
- examples : hdf5, lzo
 2016-07-13 09:27:09 +02:00
alalazo
a43c63f149 package : added EditableMakefile 
Modifications :
- added EditableMakefile to PackageBase subclasses
- astyle modified as an example
- preliminary hook to stop at a certain phase of install
 2016-07-13 09:27:09 +02:00
alalazo
8f75d34331 package : added a stub for AutotoolsPackage, examples in szip and swiftsim 2016-07-13 09:27:09 +02:00
alalazo
8ed028e2d6 package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases 2016-07-13 09:27:09 +02:00
George Hartzell
a73d91a2e5 Add URL and md5 for jdk-8u92. 
Installed on Centos7.2 system, `java -version` works.
 2016-07-12 16:59:08 -04:00
Glenn Johnson
955d02049c New package - r-ggvis 
Bring in ggvis and dependencies.

GGvis is an implementaion of the 'Grammar of Graphics', combined with
shiny.
 2016-07-12 12:27:54 -05:00
Todd Gamblin
069de3f008 Merge pull request #1223 from glennpj/tidyr 
New package - r-tidyr
 2016-07-12 00:23:09 -07:00
Todd Gamblin
04b3d8d86f Merge pull request #1222 from glennpj/libxml2 
Use the site_packages_dir from the Python class
 2016-07-12 00:22:45 -07:00
Glenn Johnson
502d15fd3b New package - r-tidyr 
Tools for changing the layout of data sets.
 2016-07-11 21:12:28 -05:00
Glenn Johnson
5e323b052a Remove import of os 
The import of `os` is no longer needed.
 2016-07-11 20:21:25 -05:00
Glenn Johnson
81daaddfe9 Use the site_packages_dir from the Python class 
It is not necessary to set site_packages_dir in this package as it is
already provided by the Python package class.
 2016-07-11 20:08:30 -05:00
Todd Gamblin
15790d7018 Merge pull request #1207 from davydden/pkg/dealii_update_petsc37 
dealii: update for petsc37
 2016-07-11 15:32:32 -07:00
Glenn Johnson
1b08296392 Fix flake8 error 2016-07-11 17:22:31 -05:00
Glenn Johnson
8de84b5d8a Fix error reported on Google Groups list 
Fixes the reported `TypeError: not enough arguments for format string`
error.
 2016-07-11 16:56:26 -05:00
Todd Gamblin
efdcd199c1 Merge pull request #1218 from glennpj/dplyr 
New package - r-dplyr
 2016-07-11 13:19:09 -07:00
Glenn Johnson
d99fbbb68f New package - r-lubridate 
Functions to work with date-times and timespans.
 2016-07-11 14:59:47 -05:00
Glenn Johnson
11960e53ef New package - r-dplyr 
This brings in dplyr and dependencies.
 2016-07-11 14:50:33 -05:00
Todd Gamblin
255d05a9c1 Merge pull request #1214 from glennpj/rfilter 
Filter compilers for R
 2016-07-11 11:37:39 -07:00
Glenn Johnson
664bdd359f Filter compilers for R 
This adds a filter_compilers function to have the Makeconf file for R
point to the actual compilers rather than the spack wrappers. Also added
version 3.3.1.
 2016-07-11 13:29:43 -05:00
Todd Gamblin
691e628726 Merge pull request #1206 from davydden/pkg/slepc_371_fix 
slepc: fix install_name for binaries on macOS for 3.7.1
 2016-07-11 09:14:53 -07:00
Paul Hopkins
0d3a52ae29 Fix typo in Octave variant suitesparse 2016-07-11 16:00:19 +01:00
Denis Davydov
1b553f2b21 dealii: fix directory structure 2016-07-11 13:21:16 +02:00
Denis Davydov
f14cd67446 dealii: flake8 fixes 2016-07-11 10:56:57 +02:00
Denis Davydov
84afaf385f dealii: run tests only when self.run_tests=true 2016-07-11 10:22:29 +02:00
Denis Davydov
1cc6e42682 dealii: add petsc/slepc 3.7 support 2016-07-11 10:20:15 +02:00
Denis Davydov
38550bbc1b slepc: fix install_name for binaries on macOS for 3.7.1 2016-07-11 10:17:09 +02:00
Geoffrey Oxberry
7551e4c14f cmake@3.6.0 
Add CMake version 3.6.0.
 2016-07-10 18:02:51 -07:00