Commit Graph

16501 Commits

Author SHA1 Message Date
Manuela Kuhn
1eb2798c43
py-numpy: conflict with gcc11 and switch master to main (#24573)
Fix syntax of conflict between numpy 1.21.0 and gcc11 to that the clingo
concretizer recognizes it.
In addition the upstream master branch was renamed to main.
2021-06-29 15:40:32 -06:00
Jen Herting
e284cd136a
New package: py-pyautogui (#24572)
* [py-pyautogui] created template

* [py-pyautogui] added some unconditional dependencies

* [py-pyautogui] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-pyautogui] added missing dependencies
2021-06-29 13:04:20 -06:00
Christoph Conrads
f5474a2b8b
CGNS: add CMake dependency (#24564) 2021-06-29 12:49:26 -06:00
holrock
c824cad2ea
ruby: add v3.0.1 (#24560) 2021-06-29 12:22:38 -06:00
Vinícius
3fe1ecd807
simgrid: add v3.27, update package (#24513) 2021-06-29 12:07:22 -06:00
Jen Herting
327cca7e2e
New package: py-huggingface-hub (#24588)
* [py-huggingface-hub] created template

* [py-huggingface-hub] added dependencies

* [py-huggingface-hub] added version 0.0.8

* [py-huggingface-hub] Final cleanup

- added description
- added homepage
- removed fixmes
2021-06-29 10:49:10 -06:00
Chuck Atkins
a7b6149cc0
libzmq: Fix gcc11 build failure (#24563) 2021-06-29 06:33:35 +02:00
Manuela Kuhn
b87d9c29c1
py-scipy: fix missing py-cython dependency (#24548) 2021-06-28 14:07:24 -06:00
Larry Knox
cc20dbf645
Hdf5 cmake (#18937)
* Switch hdf5 package from autotools to cmake.

* Add variant for building with zlib, default to ON.

* Update for format requirements.

* Format change.

* Fix breakage from last merge from develop.
Switch szip to use libaec (unrestricted encryption).
Remove 'static' variant:  static libs will only be installed when
~shared.

* Improve args based on suggestions from pull request.

* Update code URL to github.com
Add/modify 4 depends_on lines to fix running "spack graph --deptype=link hdf5".

* Remove trailing whitespace.

* Remove dependencies added solely to make "spack greph --type=link" work.

* Add new version HDF5 1.8.22.

* Remove unnecessary java_check.

* Fix whitespace for style checks.

* Reverted zlib version dependency to 1.1.2:.
zlib variant removed.
api version default renamed "default".

* Remove blank line.

* Whitespace corrections.

* iRemoved unnecessary 'debug' variant.

* Fix typo in version number in conflict for '+szip'.

* Set default for tools variant to True.
Remove patch functions dependent on 'libtool' file that cmake doesn't
produce.

* Remove line to set ONLY_SHARED_LIBS to true.
Add post_install code to install only one version of tools with shared
linkage and original tool names.

* Remove trailing white space and import of glob package not used.

* Leave BUILD_TESTING set to default which is ON.

* Remove  post_install code to install only one version of tools because
some dependent packages running tests in e4s testing are using
h5diff-shared.  Keep both tools versions for now.

* No longer need to import os.
2021-06-28 13:42:54 -06:00
Michael Kuhn
9a9b5dee2e
glib: add v2.68.3 (#24558) 2021-06-28 12:01:24 -06:00
Robert Underwood
69d69cbc79
GDB: resolve warnings about imp being deprecated (#24448)
This patch has already been accepted into gdb's trunk, we just adopting
it earlier here since it is small and gives a better user experience.
2021-06-28 07:16:28 -06:00
Mikael Simberg
744cedc7e9
Add Asio package (#24485) 2021-06-28 12:04:19 +02:00
Olivier Cessenat
e631ccc6f7
New Package: visit-mfem (#22906) 2021-06-28 12:02:41 +02:00
Kai Germaschewski
3cfc1dbc14
pfunit: fix gcc10 +mpi (#23878)
Instead of refusing to build +mpi with gcc10, add what I guess is now
the standard workaround, ie., `-fallow-argument-mismatch`.

Getting this into pfunit's cmake-based but kinda non-standard build  isi
a bit ugly, but you gotta do what you gotta do...
2021-06-28 11:33:23 +02:00
Jianwen
2970c02639
Fix kokkos version number in lammps. (#24436) 2021-06-28 11:23:34 +02:00
Manuela Kuhn
77a98cabfa
llvm: add patch for gcc11 (#24363)
llvm10 was not compiling with gcc due to missing header (see #24270)
2021-06-28 11:18:53 +02:00
Asher Mancinelli
b6aea0d6bf
Update ipopt versions, fix blas/lapack flags (#24447)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-06-28 11:14:35 +02:00
Axel Huebl
c06db97970
CUDA: 11.0.3 (11.0 "Update 1") (#24481)
Add CUDA 11.0.3.

This release adds new features such as NVCC flags
`--forward-unknown-to-host-compiler` and
`--forward-unknown-to-host-linker`
2021-06-28 10:53:47 +02:00
miheer vaidya
90dc90e8d1
barvinok: add new package (#24477) 2021-06-28 10:52:45 +02:00
Erik Schnetter
f5ef532bdc
silo: force autoreconf when building share libs (#24388) 2021-06-28 10:44:38 +02:00
lorddavidiii
2bd2ef27a2
ocl-icd, opencl-c-headers and opencl-clhpp: add new versions (#24499) 2021-06-28 02:13:24 -06:00
Scott McMillan
a4a393d097
Update Boost package to support building the latest with the NV compilers (#24541)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-06-28 01:19:36 -06:00
Chris White
a6ce000e09
RAJA + Umpire: CUDA Arch fixes (#24531) 2021-06-28 09:09:01 +02:00
Manuela Kuhn
3e65828a7e
pandoc: add 2.11.4 and 2.14.0.3 (#24542) 2021-06-28 08:50:39 +02:00
albestro
6f950bc8ee
cppzmq: add v4.7.1 and "drafts" variant (#24555) 2021-06-28 08:31:04 +02:00
Anton Kozhevnikov
9bd9cc2c7b
swith profiler on/off (#24547) 2021-06-26 19:25:15 +02:00
Alec Scott
4c149ade7f
accumulo: add v2.0.1 (#24409) 2021-06-26 05:07:13 -06:00
Stephen Herbein
9b2e7e6140
flux: add latest versions (core v0.27.0, sched v0.16.0) (#24546) 2021-06-26 04:13:18 -06:00
Cameron Smith
19a973eca0
pumi: add v2.2.6 (#24525) 2021-06-26 11:27:52 +02:00
Manuela Kuhn
ce16503bd3
r-rmarkdown: add 2.9 (#24539) 2021-06-26 11:27:17 +02:00
Manuela Kuhn
ef67ecde60
r-tinytex: add 0.32 (#24538) 2021-06-26 11:27:04 +02:00
Manuela Kuhn
2b1916d845
r-knitr: add 1.33 (#24537) 2021-06-26 11:26:46 +02:00
Manuela Kuhn
469e580034
r-mime: add 0.11 (#24536) 2021-06-26 11:26:25 +02:00
Manuela Kuhn
80585562c9
r-htmltools: add 0.5.1.1 (#24535) 2021-06-26 11:26:06 +02:00
Manuela Kuhn
2aa9e337ee
soci: add 4.0.2 and multiple variants (#24543)
Fix url to find newer versions, add newest version 4.0.2 and add
variants for
- cxxstd: To use a specific c++ standard
- static: Enable or disable build of static libraries
- boost: Boost support
- sqlite: SQLite support
- postgresql: PostgreSQL support
2021-06-26 03:25:47 -06:00
Manuela Kuhn
06a1cf2449
r-highr: add 0.9 (#24534) 2021-06-26 11:25:31 +02:00
Manuela Kuhn
2a9b9c9046
r-xfun: add 0.24 (#24533) 2021-06-26 11:25:09 +02:00
Massimiliano Culpo
17f9ddb2b5
flecsi: fixed reported issues in package (#24398)
Prevent the use of "legion network=none" when
flecsi has "backend=legion"
2021-06-26 09:17:53 +02:00
Satish Balay
dbf030f27a
p4est: autoreconf required only for @2.0 (#24544) 2021-06-25 19:02:47 -07:00
Satish Balay
8937102006
p4est: use autoreconf only for @:2.2 (#24528)
This fixes @2.3.2 build breakage with #23824 changes.
2021-06-25 14:04:32 -07:00
snehring
cf0b3632ff
bwa: fixing build errors with gcc10+ (#24475) 2021-06-25 22:12:01 +02:00
Even Rouault
843c38e69e
GDAL: only jasper will be removed in GDAL 3.5, not openjpeg (#24483) 2021-06-25 10:19:23 -06:00
Satish Balay
3087d74ca7
sundials: remove sundials_nvecopenmp target from ARKODE SuperLU_DIST example (#24516) 2021-06-25 08:19:26 -06:00
Jen Herting
03f54ea4bb
py-seqeval: new package (#24486) 2021-06-25 14:35:00 +02:00
Joseph Schoonover
25522b5c9c
HOHQMesh: add new package (#24501)
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2021-06-25 14:15:04 +02:00
Michael Kuhn
f4b96a21c8
go-bootstrap: Increase environment variable size (#24508)
When having a few packages loaded, installing go-bootstrap will fail
because the `PATH` variable is truncated at 4096 bytes. Increase the
limit to 128 KiB to make longer paths fit.
2021-06-25 11:00:06 +02:00
Satish Balay
291703f146
xsdk: fix dealii@9.2.0 build (#24515)
1. "+simplex" conflicts with "dealii@:9.2" [The interface to simplex is supported from version 9.3.0 onwards. Please explicitly disable this variant via ~simplex]
2. "+arborx" conflicts with "dealii@:9.2" [The interface to arborx is supported from version 9.3.0 onwards. Please explicitly disable this variant via ~arborx]
2021-06-25 10:54:06 +02:00
Alec Scott
6bf1f69b4c
lmod: add v8.5.6 (#24511) 2021-06-25 10:49:01 +02:00
Adam J. Stewart
b9eeef8c38
ONNX: add new versions (#24518) 2021-06-25 09:31:20 +02:00
Olivier Cessenat
ec2d4c07b3
texlive: add support for external find (#24460) 2021-06-25 09:25:18 +02:00
Gregory Lee
7dafc827a7
only apply onapi patch to m4 for v1.4.18 (#24490) 2021-06-24 17:35:26 -07:00
Adam J. Stewart
26f740b25a
Sleef: add new versions (#24443)
* Sleef: add new versions
* Mix release versions and dates
2021-06-24 17:58:19 -06:00
Hadrien G
0c996671b8
[acts] Add versions 9.0.0 and 9.0.1 (#24428) 2021-06-24 17:28:27 -06:00
Alec Scott
4eb4994472
Update Jasper to 2.0.32 (#24510) 2021-06-24 23:15:17 +00:00
Alec Scott
e45800126a
abyss: add v2.3.1 (#24408) 2021-06-24 15:01:46 -06:00
Howard Pritchard
7456a0348f
OPENMPI: fixes to enable building of ompi master (#24391)
yes I know this name isn't popular but that's the way it is right now.

master and the upcoming v5.0.x release branch use git submodules.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-06-24 13:55:01 -07:00
Alec Scott
1367cc97c2
bedops: add v2.4.39 (#24411) 2021-06-24 14:46:20 -06:00
Manuela Kuhn
9d0b8b575b
postgresql: fix typo and missing import (#24491) 2021-06-24 11:11:44 -05:00
Jen Herting
8f2f5639c8
[xxhash] added version 0.8.0 (#24492) 2021-06-24 11:11:01 -05:00
Jen Herting
cf38a96b14
New package: py-xxhash (#24493)
* [py-xxhash] created template

* [py-xxhash] working on dependencies

* [py-xxhash] set version for xxhash

* [py-xxhash] Final cleanup

- added homepage
- added description
- removed fixmes
2021-06-24 11:10:24 -05:00
Anton Kozhevnikov
b1009b48b9
sirius: add single precision switch (#24500) 2021-06-24 08:46:28 -06:00
Joseph Schoonover
d3a1da8496
FTObjectLibrary: new package (#24423)
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2021-06-23 22:55:28 -06:00
Jen Herting
3d631377c0
New package: py-mouseinfo (#24245)
* [py-mouseinfo] created template

* [py-mouseinfo] added some dependencies

* [py-mouseinfo] added platform dependent dependency information

* [py-mouseinfo] flake8

* [py-mouseinfo] added python2 dependency and conflict with darwin for missing dependency

* [py-mouseinfo] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-mouseinfo] using pil provider
2021-06-23 15:46:20 -06:00
Olivier Cessenat
387ee5a0b7
gsl: add v2.7 (#24474) 2021-06-23 18:46:16 +02:00
Uwe Sauter
97f0c3ccd9
Add dependency on rocm-cmake to various ROCm related packages (#24427) 2021-06-23 11:35:49 +02:00
Peter Scheibel
323b47a94e
add version 35.0 of luaposix (#24458) 2021-06-22 12:49:34 -06:00
Massimiliano Culpo
acc11f676d
ASP-based solver: fix provider logic (#24351)
This commit fixes a subtle bug that may occur when
a package is a "possible_provider" of a virtual but
no "provides_virtual" can be deduced. In that case
the cardinality constraint on "provides_virtual"
may arbitrarily assign a package the role of provider
even if the constraints for it to be one are not fulfilled.

The fix reworks the logic around three concepts:
- "possible_provider": a package may provide a virtual if some constraints are met
- "provides_virtual": a package meet the constraints to provide a virtual
- "provider": a package selected to provide a virtual
2021-06-22 11:37:24 -07:00
Ethan Stam
09a6f3533b
z3: set CMAKE_INSTALL_PYTHON_PKG_DIR for +python build (#24470) 2021-06-22 11:20:09 -07:00
Adam J. Stewart
e4c38ba14c
py-cartopy: mark incompatibility with PROJ 8 (#24454) 2021-06-22 11:12:25 -07:00
OliverPerks
d292541edb
sw4lite: fixed to include build targets (#24466) 2021-06-22 13:01:34 -05:00
Thomas Madlener
07fe558509
dd4hep: Updated version checksum due to updated tag (#24469) 2021-06-22 10:49:50 -07:00
snehring
377f031461
subread: updating subread to 2.0.2 (#24468) 2021-06-22 10:33:33 -07:00
Harmen Stoppels
d63566915d
Bump libfuse (#24444) 2021-06-22 10:06:45 -07:00
Adam J. Stewart
11ad6e1a8a
py-pandas: add v1.2.5 (#24464) 2021-06-22 10:05:38 -07:00
Adam J. Stewart
ccece0e197
py-numpy: add v1.21.0 (#24463) 2021-06-22 10:05:22 -07:00
eugeneswalker
65e7e1f969
tau: use filter_compiler_wrappers to take advantage of builtin functionality (#24457) 2021-06-22 12:00:27 -05:00
Adam J. Stewart
b0a915a3b6
py-scipy: add v1.7.0 (#24438) 2021-06-22 11:56:16 -05:00
Erik Schnetter
e3b220f699
Implement CVS fetcher (#23212)
Spack packages can now fetch versions from CVS repositories. Note
this fetch mechanism is unsafe unless using :extssh:. Most public
CVS repositories use an insecure protocol implemented as part of CVS.
2021-06-22 09:51:31 -07:00
Adam J. Stewart
512edfcceb
py-pythran: add new package (#24440) 2021-06-22 07:07:15 -06:00
Vanessasaurus
8e249c03de
adding save of build times on install (#24350)
Here we are adding an install_times.json into the spack install metadata folder.
We record a total, global time, along with the times for each phase. The type
of phase or install start / end is included (e.g., build or fail)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-06-22 03:01:15 -06:00
Adam J. Stewart
726537e01b
py-beniget: add new package (#24439) 2021-06-22 08:50:10 +02:00
Adam J. Stewart
d71a0590b7
py-gast: add v0.4.0 (#24437) 2021-06-22 08:49:38 +02:00
Paul Henning
3039237a0e
hdf5: fix compiler detection in flag_handler (#24451)
The original implementation of `flag_handler` searched the
`self.compiler.cc` string for `clang` or `gcc` in order to add a flag
for those compilers.  This approach fails when using a spack-installed
compiler that was itself built with gcc or clang, as those strings will
appear in the fully-qualified compiler executable paths.  This commit
switches to searching for `%gcc` or `%clang` in `self.spec`.

Co-authored-by: Paul Henning <phenning@lanl.gov>
2021-06-21 23:36:28 -07:00
Howard Pritchard
5e48d2c16f
open mpi: remove preferred for 4.0.5 release (#24433)
the 4.1.1 release has fixes for problems that kept 4.1.0 from
being the default open mpi version to build using spack.

related to #24396

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-06-21 23:36:09 -07:00
Adam J. Stewart
31e6967c49
MAGMA: add patch to build with CUDA sm_37 (#24442) 2021-06-21 20:18:26 -07:00
Chris White
c9932b2d1e
Axom: Remove blueos check on cuda variant (#24349)
* remove blueos check on cuda variant, fix typo

* restore necessary compiler guard

* remove axom+cuda from testing because it only partially works outside ppc systems
2021-06-22 01:29:18 +00:00
Peter Scheibel
c83f4b01aa
Fetching: git on Mac OS (#24247)
Extend the changes in #24163 to unit tests.
2021-06-21 17:53:12 -07:00
Adam J. Stewart
7b6ca59038
psimd: add new package (#24406) 2021-06-19 08:25:21 -05:00
Adam J. Stewart
62653b9c36
cpuinfo: add new versions (#24402) 2021-06-19 11:05:41 +02:00
Adam J. Stewart
ebcc222181
FP16: add new versions, prevent downloads (#24403) 2021-06-19 11:05:24 +02:00
Adam J. Stewart
9984e61347
pthreadpool: add new versions (#24404) 2021-06-19 11:04:52 +02:00
Adam J. Stewart
76632d6710
FXdiv: add new package (#24405) 2021-06-19 11:04:25 +02:00
snehring
d394e9978e
singularity: add v3.8.0 (#24407) 2021-06-19 10:57:37 +02:00
Alec Scott
5f415c9782
Beast2: add v2.6.4 (#24410) 2021-06-19 10:53:59 +02:00
Alec Scott
c432076280
bedtools2: add v2.30.0 (#24412) 2021-06-19 10:53:21 +02:00
Alec Scott
73d7444ca7
benchmark: add v1.5.5 (#24413) 2021-06-19 10:52:51 +02:00
Alec Scott
93c75fe3f7
Bismarck: add v0.23.0 (#24414) 2021-06-19 10:51:59 +02:00
Alec Scott
aa65293709
cantera: add v2.5.1 (#24415) 2021-06-19 10:51:32 +02:00
Alec Scott
767f03f82f
coreset: add v1.09 (#24419) 2021-06-19 10:47:27 +02:00
Alec Scott
4ba6a850d9
diamond: add v2.0.9 (#24421) 2021-06-19 10:46:41 +02:00