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Author SHA1 Message Date
Adam J. Stewart
47bd8a6b26 py-pyvista: add v0.44.1 (#46231) 2024-09-05 10:53:42 -07:00
Adam J. Stewart
93d31225db py-tifffile: add v2024 (#46232) 2024-09-05 10:52:21 -07:00
Alex Richert
c3a1d1f91e Add when's to some tau dependencies (#46212) 
* Add when's to some tau dependencies

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
 2024-09-05 10:35:01 -07:00
estewart08
33621a9860 [rocm-openmp-extras] - Add support for flang-legacy in 6.1.2 (#46130) 
* [rocm-openmp-extras] - Add support for flang-legacy in 6.1.2
* [rocm-openmp-extras] - Remove unused variable flang_legacy_dir
* [rocm-openmp-extras] - Limit flang-legacy build to 6.1 and newer ROCm versions
 2024-09-05 12:27:50 -05:00
etiennemlb
055eb3cd94 PLUMED: Using a C compiler variable (#46082) 
* Using a C compiler variable

* homogeneity
 2024-09-05 10:43:28 -06:00
Massimiliano Culpo
c4d18671fe Avoid best-effort expansion of stacks (#40792) 
fixes #40791

Currently stacks behave differently if used in unify:false
environments, which leads to inconsistencies during concretization.

For instance, we might have two abstract user specs that do not
intersect with each other map to the same concrete spec in the
environment. This is clearly wrong.

This PR removes the best effort expansion, so that user specs
are always applied strictly.
 2024-09-05 10:32:15 -06:00
Thomas Madlener
5d9f0cf44e gaudi: Specify boost dependencies explicitly and cleanup package (#46194) 
* gaudi: Specify boost components and add +fiber for v39

* gaudi: Limit fmt version to allow building master branch

* Make boost dependencies a bit more readable

* Remove patches for no longer existing versions
 2024-09-05 08:27:04 -06:00
Harmen Stoppels
02faa7b97e reindex: ensure database is empty before reindex (#46199) 
fixes two tests that did not clear the in-memory bits of a database
before calling reindex.
 2024-09-05 14:53:29 +02:00
Mikael Simberg
d37749cedd pika: Add 0.28.0 (#46207) 
* pika: Add 0.28.0

* Add conflict between pika 0.28.0 and dla-future
 2024-09-05 14:12:21 +02:00
Harmen Stoppels
7e5e6f2833 Pass Database layout in constructor (#46219) 
Ensures that Database instances do not reference a global
`spack.store.STORE.layout`. Simplify Database.{add,reindex} signature.
 2024-09-05 10:49:03 +00:00
Massimiliano Culpo
37ea9657cf Remove test_external_package_module (#46218) 
This test was possibly meant for the Cray platform, and
currently is a no-op.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-09-05 12:10:59 +02:00
Harmen Stoppels
2107a88514 spack deprecate: deprecate --link-type flag (#46202) 2024-09-05 11:06:46 +02:00
Auriane R.
1a4b07e730 Replace if ... in spec with spec.satisfies in d* and e* packages (#46126) 
* Replace if ... in spec with spec.satisfies in d* and e* packages

* Use virtuals for different mpi implementations in esmf

* esmf: ^[virtuals=mpi] mpt

* extrae: ^[virtuals=mpi] intel-oneapi-mpi

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-09-04 22:33:51 -06:00
Jack Morrison
c98045e028 libfabric: Add CUDA variant (#46203) 
Signed-off-by: Jack Morrison <jack.morrison@cornelisnetworks.com>
 2024-09-04 21:43:25 -06:00
mvlopri
bc5456a791 seacas: require +metis and +mpi instead of +parmetis (#46205) 
This change aligns the build condition for parmetis with the
depends_on condition.
The current build condition of parmetis looks for "+parmetis" in
the spec which is not added by the depends_on as that adds
"^parmetis" instead.
 2024-09-04 21:03:02 -06:00
Pranav Sivaraman
656720a387 py-schema: add v0.7.7 (#46210) 
* py-schema: add v0.7.7

* py-schema: fix when spec

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-09-04 20:07:35 -06:00
Mikael Simberg
9604c0a9b3 boost: Conditionally include/exclude Boost.Json depending on Boost version (#46200) 2024-09-04 16:50:06 -06:00
Pranav Sivaraman
ee96194486 py-misk: add new package (#46153) 2024-09-04 11:25:01 -07:00
Felix Thaler
ab21fc1daf Added jump package (#46164) 2024-09-04 11:16:20 -07:00
Pranav Sivaraman
d593ad0c06 py-trieregex: new package (#46154) 
* py-trieregex: new package
 2024-09-04 10:58:08 -07:00
Weiqun Zhang
254fe6ed6e amrex: add v24.09 (#46171) 2024-09-04 10:54:49 -07:00
renjithravindrankannath
7e20874f54 rocm-openmp-extras: Avoiding registration of duplicate check-targets and fix for the failure in hostexec (#45658) 
* Adding addtional check for omptarget library for amdgpu in nvidia environment
* Avoiding registration of duplicate when built on cuda
* Adding hsa library path in LD_LIBRARY_PATH
* Correction in hsa prefix library path in LD_LIBRARY_PATH
 2024-09-04 10:31:28 -07:00
Vanessasaurus
cd4c40fdbd Automated deployment to update package flux-core 2024-09-04 (#46191) 
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
 2024-09-04 10:28:44 -07:00
Harmen Stoppels
c13e8e49fe goaccess: new package (#46193) 2024-09-04 10:23:28 -07:00
Adam J. Stewart
35a2a0b3d0 py-rasterio: add v1.3.11 (#46195) 
* py-rasterio: add v1.3.11
* Use default_args
 2024-09-04 09:45:16 -07:00
Adam J. Stewart
22d69724f4 py-fiona: add v1.10.0 (#46196) 2024-09-04 09:36:43 -07:00
Adam J. Stewart
f6e3f6eec7 py-numpy: add v2.1.1 (#46197) 2024-09-04 09:33:07 -07:00
G-Ragghianti
866c440f0c Updating git repo location (#46183) 2024-09-04 10:34:05 -05:00
Juan Miguel Carceller
fe6f5b87dc texlive: clean up recipe (#45863) 
* texlive: clean up recipe

* Update the poppler dependency

* Fix typo

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-09-04 10:20:23 -05:00
Vicente Bolea
3df3f40984 paraview: add new v5.13.0 release (#46091) 2024-09-04 10:14:52 -05:00
Satish Balay
33f4a40df4 trilinos: update @[master,develop] dependency on kokkos (#46182) 
==> Error: InstallError: For Trilinos@[master,develop], ^kokkos version in spec must match version in Trilinos source code. Specify ^kokkos@4.4.00 for trilinos@[master,develop] instead of ^kokkos@4.3.01.
 2024-09-04 07:34:20 -06:00
Kyle Knoepfel
7ba0132f66 llvm: improve detection regexes (#46187) 2024-09-04 04:12:42 -06:00
Mikael Simberg
744f034dfb Add conflict between llvm-amdgpu until version 5 and ninja since version 1.12.0 (#45788) 
* Add conflict between llvm-amdgpu and ninja since version 1.12.0

* Update llvm-amdgpu and ninja conflict to extend to 6.0
 2024-09-04 10:37:48 +02:00
Massimiliano Culpo
d41fb3d542 llvm: be more strict with detection (#46179) 2024-09-03 22:37:30 +02:00
Laurent Aphecetche
9b077a360e root: fix @loader_path on macOS (#44826) 
* root: fix @loader_path on macOS

* root: use loader patch from upstream

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* add missing comma

* root: rm unused patch

* root: conflict on macos 12 for @:6.27 when +python

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-09-03 09:50:31 -05:00
Stephen Nicholas Swatman
5c297d8322 root: fix X11 and OpenGL-related issues on macOS (#45632) 
* root: Add dependency on libglx

We have been trying to build the Acts package on MacOS, and in this
process we have been running into problems with the ROOT spec on that
operating system; the primary issue we are encountering is that the
compiler is unable to find the `GL/glx.h` header, which is part of glx.
It seems, therefore, that ROOT depends on libglx, but this is not
currently encoded in the spec. This commit ensures that ROOT depends on
the virtual libglx package when both the OpenCL and X11 variants are
enabled.

* Enable builtin glew on MacOS

* Allow `root+opengl+aqua~x` on macOS
 2024-09-03 08:32:17 -05:00
Massimiliano Culpo
9e18e63053 solver: minor cleanup and optimization (#46176) 
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-09-03 10:35:54 +00:00
Harmen Stoppels
069286bda7 database: remove a few class properties (#46175) 2024-09-03 11:22:14 +02:00
Richard Berger
1679b5e141 nvpl updates (#45922) 
* nvpl-blas: add new version 0.3.0

* nvpl-lapack: add new version 0.2.3.1
 2024-09-03 08:07:24 +02:00
Pierre Augier
1f935ac356 Add py-pytest-allclose package (#45877) 2024-09-02 14:34:24 -06:00
Pariksheet Nanda
e66e572656 py-cellprofiler: add 4.2.6 new package (#44824) 
* py-cellprofiler: add 4.2.6 new package

* py-mysqlclient: Limit pkg-config patch to @1.4:

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-09-02 14:21:39 -05:00
JCGoran
17d3d17d46 py-sympy: add version 1.13.0 (#46163) 
* sympy: add version 1.13.0

* sympy: update deps
 2024-09-02 09:51:44 -06:00
Thomas Madlener
c814fb5fe6 podio: Add the new datasource variant once it is available (#46078) 
* podio: Add the new datasource variant once it is available

* Make sure to require a suitable minimal root version
 2024-09-02 08:39:43 -05:00
Harmen Stoppels
fe2d06399f db: type hints (#46168) 2024-09-02 14:44:49 +02:00
Harmen Stoppels
b5dec35113 projections: simplify expression (#46167) 2024-09-02 12:38:47 +00:00
Harmen Stoppels
20565ba8ab remove dead code: fs.is_writable_dir was used on file (#46166) 2024-09-02 11:55:40 +00:00
Wouter Deconinck
c47a3ee05b package_base: sort deprecated versions later in preferred_version (#46025) 2024-09-02 10:42:15 +00:00
Wouter Deconinck
aaa7469b92 py-vector: add v1.4.2, v1.5.0; variant awkward (#46039) 2024-09-02 09:41:15 +02:00
Asher Mancinelli
1f8a6d8e8b [neovim] add utf8proc dependency (#46064) 
I believe utf8proc was added as a neovim dependency in neovim/neovim#26165
and is only in the master branch.
 2024-09-02 09:28:30 +02:00
Richard Berger
654bf45c01 kokkos-nvcc-wrapper: add new 4.4.00 version (#46067) 2024-09-02 09:27:13 +02:00