Commit Graph

11664 Commits

Author SHA1 Message Date
Sinan
9a8e9f265e package/qgis: add new versions (#17284)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-28 13:30:58 -05:00
Amjad Kotobi
02d5b8c425 intel: added new versions (#17287) 2020-06-28 13:30:21 -05:00
Dr. Christian Tacke
7aac150617 vmc: New Package (#17282)
"""The Virtual Monte Carlo (VMC) library"""
2020-06-28 13:28:42 -05:00
darmac
68633fac5c redis: add config file from source code (#17225)
* redis: add config file from source code

* Update var/spack/repos/builtin/packages/redis/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28 13:26:04 -05:00
Axel Huebl
064618e1ea WarpX: Development Branch (#17163)
* WarpX: Development Branch

Update the name of our development branch.

* WarpX version: develop keyword

development is not a "newest"-like keyword, but `master`/`develop`/`dev` are.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Renamed: develop version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28 01:23:11 -07:00
Greg Becker
cc28493449 make gcc build on aarch64 (#17280) 2020-06-27 18:51:11 -05:00
Axel Huebl
d7c46d8c57 CUDA: CUDAHOSTCXX Env (#16869)
This is a general CMake CUDA language hint to use the CXX
compiler has host compiler for NVCC. Seems like a good
default since we do not express the CUDA compiler in Spack
otherwise yet (e.g. no `self.compiler.cuda` or
`self.compiler.cudahostcxx`).
2020-06-27 15:36:18 -05:00
Dr. Christian Tacke
f7aecd9d6e perl-date-manip: New Package Date::Manip (#17259) 2020-06-27 14:54:50 -05:00
vvolkl
0ddfcf097b [gaudi] new version, cleanup (#17268) 2020-06-27 14:42:23 -05:00
Fabian Brandt
a640befb60 Patch needed also for version 7.0 (#17269) 2020-06-27 14:41:24 -05:00
Hans Pabst
1345d30750 LIBXSMM 1.16.1 (#17274) 2020-06-27 14:39:35 -05:00
albestro
81b4c03f56 migrate to git and update commit (#17276) 2020-06-27 14:39:01 -05:00
David Gardner
00fd63f5ee superlu-mt: add pic and int64 variants (#11361)
* add pic and int64 variants

* update to Language-specific PIC flags
2020-06-27 09:52:32 -05:00
Adam J. Stewart
c8e6a9e535 Fix super invocation in Intel packages (#17248) 2020-06-26 14:04:35 -05:00
Adam J. Stewart
cecd300693 py-azureml-sdk: add new package (and deps) (#17261) 2020-06-25 20:15:21 -05:00
Axel Huebl
e6bf0b01c4 Ascent & Conduit: ~python default (#17230)
* Ascent: ~python default

Packages that build optional python bindings do not build them by default in Spack:
https://spack.readthedocs.io/en/latest/packaging_guide.html#variant-names

This reduces long dependency trees and build times, e.g. for apps just using C/C++/Fortran bindings of a library.

* Conduit: ~python default

Packages that build optional python bindings do not build them by
default in Spack:
  https://spack.readthedocs.io/en/latest/packaging_guide.html#variant-names

This reduces long dependency trees and build times, e.g. for apps
just using C/C++/Fortran bindings of a library.
2020-06-25 20:14:57 -05:00
Dr. Christian Tacke
49b0ac804b munge: Update homepage URL (#17257) 2020-06-25 22:33:38 +02:00
Ge Wenjun
740a9d88f9 add new package: datatransferkit (#17158)
* add new package: datatransferkit

* fix style

* remove the build type;add~dtk;'shared' variant;homepage

* add maintainer
2020-06-25 14:57:31 -05:00
manifest
d2b56dbce3 add sra-toolkit@2.10.7 (#16947)
* sra-tools

* sra-tools style fix

* sratoolkit version update
2020-06-25 14:33:26 -05:00
Michael Kuhn
e8465ce81c libtirpc: Add 1.2.6 (#17209)
Earlier versions do not compile with gcc@10:.
2020-06-25 14:32:34 -05:00
Andrey Prokopenko
9f3e542d30 Update ArborX for new Kokkos (#17213)
* Update ArborX for new Kokkos

* Set maintainer
2020-06-25 14:20:31 -05:00
Greg Becker
096bd69a94 prevent multiple version sigils in the same spec (#17246)
* prevent multiple version sigils in the same spec

* fix packages with malformed versions
2020-06-25 12:34:09 -05:00
Erik Schnetter
e04c89f086 mpich: Allow building with external hwloc library (#15305)
This is in principle supported already, but requires a patch to avoid build errors.

Closes #15302

Co-authored-by: Michael Kuhn <michael.kuhn@informatik.uni-hamburg.de>
2020-06-25 18:27:48 +02:00
Massimiliano Culpo
14599f09be Separate Apple Clang from LLVM Clang (#17110)
* Separate Apple Clang from LLVM Clang

Apple Clang is a compiler of its own. All places
referring to "-apple" suffix have been updated.

* Hack to use a dash in 'apple-clang'

To be able to use autodoc from Sphinx we need
a valid Python name for the module that contains
Apple's Clang code.

* Updated packages to account for the existence of apple-clang

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added unit test for XCode related functions

Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-25 11:18:48 -05:00
manifest
5c712a03a1 msmc2: added package at v2.1.2 (#17170)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-25 10:43:33 +02:00
Brian Van Essen
089a21dd1d Update the version of Cereal. (#17244) 2020-06-24 23:00:06 -05:00
John Jolly
d8a7cfc36a chill: Patch to include gmp, isl, and libquadmath (#16996)
The rose library uses the `strtoflt128` and `quadmath_snprintf`
functions. In order to successfully link the rose library, chill must
also link the GCC libquadmath library to resolve the two functions. This
patch changes the chill build to include this library.

Chill will also not compile unless headers from the gmp and isl
libraries are found in the includes path. Two patches - one each for gmp
and isl - modify the chill build process to add options to specify those
paths. These options follow the similar pattern as seen with BOOSTHOME
and ROSEHOME options which already exist in the chill build process.

Because of the addition of GMPHOME and ISLHOME options, build
requirements for gmp and isl are also added.
2020-06-24 22:53:09 -05:00
Tomoki, Karatsu
b2a4af764c vtk: Add patch for finding Fujitsu-MPI wrapper commands. (#17069) 2020-06-24 22:52:31 -05:00
Michael Kuhn
cee24fbc98 mvapich2: Fix build with gcc@10: (#17114) 2020-06-24 22:49:30 -05:00
Sergey Kosukhin
8d67279181 openjdk and jdk: extend the list of provided versions of java (#17151) 2020-06-24 22:43:30 -05:00
vvolkl
b8270559d9 [podio] patch to correctly load dictionaries in v00-10 (#17157) 2020-06-24 22:42:41 -05:00
Jen Herting
fe14c201dc New package: py-mmtf-python (#17201)
* mdanalysis

* [py-mmtf-python] fixed copyright

Co-authored-by: Andrew Elble <aweits@rit.edu>
2020-06-24 22:24:16 -05:00
oracleLee
e81533eb9b Update a supported package 'user-meamc' for lammps (#17207)
* Update package.py

* edit confliction when add package 'meam' 

 The USER-MEAMC fully replaces the MEAM package, which has been removed from LAMMPS after the 12 December 2018 version.
2020-06-24 22:23:17 -05:00
cedricchevalier19
a928f44fc0 Fix missing dependency in Mono (#17208)
* Add missing dependency on Python for Mono.

At build time

* Adding version 6.8.0.123 for mono
2020-06-24 22:22:40 -05:00
Cyrus Harrison
eee56295ce add cond py-mpi4py dep to conduit (#17211) 2020-06-24 22:19:28 -05:00
Chuck Atkins
30958649fb ecp-io-sdk: remove deprecated numa variant from unify-fs (#17212) 2020-06-24 22:18:49 -05:00
Glenn Johnson
7717532d14 The lapack-0.3.9-xerbl patch is no longer needed (#17217)
The lapack-0.3.9-xerbl patch is not needed for versions 0.3.10 and
above.
2020-06-24 22:12:48 -05:00
Jonathan R. Madsen
bed11a5a54 timemory: Updated nearly all options to default to OFF (#17221)
* Updated nearly all options to default to OFF

* Fixed imported but unused module flake error
2020-06-24 22:10:43 -05:00
Michio Ogawa
95f351de7e Updated MUMPS(5.3.3) (#17223)
* Updated MUMPS-5.3.3

* fixed E741 error(l -> ltr)
2020-06-24 22:09:44 -05:00
Adam J. Stewart
791267c3dc NCCL: add latest version (#17234) 2020-06-24 21:59:32 -05:00
Adam J. Stewart
cd2e945e4e py-horovod: add latest version (#17235) 2020-06-24 21:59:10 -05:00
Adam J. Stewart
ad708cde53 GPyTorch: add new package (#17237) 2020-06-24 21:58:31 -05:00
Adam Moody
b00bc2a18e dtcmp: add v1.1.1 (#17240)
Signed-off-by: Adam Moody <moody20@llnl.gov>
2020-06-24 21:58:09 -05:00
Adam Moody
e12784bcb1 lwgrp: add v1.0.3 (#17242) 2020-06-24 21:57:37 -05:00
Nichols A. Romero
ec58f28c20 quantum-espresso: fix for scalapack with openmpi (#17179) 2020-06-24 16:30:00 +02:00
Gilles Gouaillardet
577a88880e gromacs: fix fftw and update cmake dependencies (#17226)
* gromacs: fix fftw dependency

Only depend on fftw+mpi when gromacs is built with mpi,
and depend on fftw~mpi otherwise.

* gromacs: fix cmake dependency

master branch depends on cmake 3.11 (as specified in CMakeLists.txt
cmake dependency is also bumped to 3.11 when fj compilers are used
in order to fix OpenMP detection.
2020-06-24 05:47:55 -06:00
Michael Kuhn
fe0d3c22c6 perl: added v5.30.3 and v5.32.0 (#17220)
perl.org still recommends 5.30.3, so keep it as the preferred version.
2020-06-24 11:01:48 +02:00
Nichols A. Romero
4c055630d5 quantum-espresso: correctly cross-compile code for Cray and BG/Q (#17180) 2020-06-24 09:52:27 +02:00
victorusu
94cce5f963 Enable mysql for macos (#17177)
I get the following error message, if I do not use editline from the system.

```
>> 3090    Undefined symbols for architecture x86_64:
     3091      "_tgetent", referenced from:
     3092          _terminal_set in libedit.a(terminal.c.o)
     3093      "_tgetflag", referenced from:
     3094          _terminal_set in libedit.a(terminal.c.o)
     3095      "_tgetnum", referenced from:
     3096          _terminal_set in libedit.a(terminal.c.o)

     ...

     3110          _terminal_insertwrite in libedit.a(terminal.c.o)
     3111          _terminal_clear_EOL in libedit.a(terminal.c.o)
     3112          _terminal_clear_screen in libedit.a(terminal.c.o)
     3113          _terminal_beep in libedit.a(terminal.c.o)
     3114          ...
     3115    ld: symbol(s) not found for architecture x86_64
```
2020-06-23 21:29:45 +02:00
Michio Ogawa
0493e133c5 revocap-refiner: updated package (#17192) 2020-06-23 18:26:47 +02:00