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Author SHA1 Message Date
iarspider
849f01df86 Add checksum for py-smmap 3.0.5,4.0.0,5.0.0 (#31898) 2022-08-03 10:07:22 -07:00
Adam J. Stewart
6b23fe857e py-torchgeo: lock down pytorch-lightning version (#31886) 2022-08-03 10:26:38 -06:00
Glenn Johnson
26ec46e834 r-rhtslib: fix issue with git commit for v1.28 (#31653) 
There is a problem with the git repo for rhtslib that apparently led to
a bad version entry during the previous round of package updates. A git
checkout on the commit also fails so use branch for most recent version.
 2022-08-03 10:22:05 -06:00
Erik
d93c074491 AMReX: SYCL support (#31233) 
Add SYCL support, check CUDA-HIP-SYCL mutually exclusive. Require
AMReX ver 21.06+ for SYCL.

Co-authored-by: etpalmer63 <etpalmer63@users.noreply.github.com>
 2022-08-03 09:54:09 -06:00
Vicente Bolea
af0e20ba9f adios2: add v2.8.3 (#31885) 2022-08-03 07:25:52 -06:00
Harmen Stoppels
78364a6fe4 openssl: copy mozilla certs to work around symlink relocation issue (#31862) 2022-08-03 14:16:47 +02:00
Jen Herting
ba9b225ffc zopfli: add new package (#31879) 
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-03 06:02:02 -06:00
Piotr Luszczek
a5d49ef77a plasma: add code generation step for develop version (#31668) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-08-03 13:30:24 +02:00
Peter Scheibel
5603b031de Also set FC when building hypre+fortran (#31850) 2022-08-03 13:12:42 +02:00
dunatotatos
a8480281d5 QTLTools: add new package (#31881) 2022-08-03 12:42:45 +02:00
dunatotatos
ab87cac63f Match documentation of spack create with actual behavior. (#31892) 2022-08-03 10:38:56 +00:00
Jen Herting
09c56255c3 libspng: add new package (#31878) 
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-03 04:30:05 -06:00
Massimiliano Culpo
080a26a314 Remove macOS 10.15 from bootstrap tests (#31890) 
That version of the runners have been deprecated, see:
https://github.blog/changelog/2022-07-20-github-actions-the-macos-10-15-actions-runner-image-is-being-deprecated-and-will-be-removed-by-8-30-22/
 2022-08-03 12:29:29 +02:00
Yang Zongze
ad09f7a1af Make parmmg dependent on mmg and metis (#31838) 
1. copy source of mmg to its install tree for parmmg's build
2. add cmake args for parmmg
3. add '+mmg' when '+parmmg' for petsc
 2022-08-03 01:57:53 -06:00
Adam J. Stewart
8f55c3c34a py-pytorch-lightning: add v1.7.0 (#31871) 2022-08-03 09:44:27 +02:00
Ken Raffenetti
84073466e6 mpich: fix hwloc config option for version >= 4.0 (#31874) 
In MPICH 4.0, the config option for external hwloc changed from
--with-hwloc-prefix to --with-hwloc
 2022-08-03 09:21:50 +02:00
dependabot[bot]
4aaa3841b8 build(deps): bump actions/setup-python from 4.1.0 to 4.2.0 (#31882) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.1.0 to 4.2.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](c4e89fac7e...b55428b188)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-08-03 09:08:03 +02:00
Chris Green
4d2ed35552 black: fix bootstrap for Python 3.6 (#31872) 
* py-platformdirs: sanitize UTF-8 setup.cfg on Python 3.6

* py-platformdirs: black compliance

* Minimal fix per @adamjstewart
 2022-08-02 20:49:36 -06:00
Chuck Atkins
2ed03407f4 libedit: Make sure libedit linkes to the correct terminfo lib from spack (#31870) 2022-08-02 20:49:14 -06:00
eugeneswalker
0462818c2e e4s oneapi ci: build vtk-m ~openmp due to issue #31830 (#31840) 2022-08-02 14:45:58 -07:00
Harmen Stoppels
2ecec26188 ca-certificates-mozilla: add v2022-07-19 and v2022-04-26(#31863) 2022-08-02 15:30:02 -06:00
eugeneswalker
b3f221185e butterflypack %oneapi: patch CMakeLists to solve issue #31818 (#31848) 
* butterflypack %oneapi: patch CMakeLists to solve issue #31818

* uncomment builds affected by failing butterflypack

Co-authored-by: e <e>
 2022-08-02 14:02:00 -06:00
Andrew W Elble
e11211eec6 new package: py-alphafold (#27849) 
* new package: alphafold

and related dependencies, depends on #27138

* [@spackbot] updating style on behalf of aweits

* fix

Co-authored-by: aweits <aweits@users.noreply.github.com>
 2022-08-02 20:01:22 +00:00
Peter Scheibel
4e723b634e Allow building with camp@0.2.3 for raja@0.14.0 and umpire@6.0.0 (#31853) 2022-08-02 21:39:45 +02:00
Jonathon Anderson
8c50ea9dc0 spack ci rebuild: Don't install in a login shell (#31771) 
On some systems the shell in login mode wipes important parts of the
environment, such as PATH. This causes the build to fail since it can't
find `spack`.

For better robustness, don't use a login shell.

In a full CI job the final spack install is run in an environment formed by scripts running in this order:

export AWS_SECRET=...                  # 1. Load environment from GitLab project variables
source spack/share/spack/setup-env.sh  # 2. Load Spack into the environment (PATH)
spack env activate -V concrete_env     # 3. Activate the concrete environment
source /etc/profile                    # 4. Bash login shell (from -l)
spack install ...
Whereas when a user launches their own container with (docker|podman) run -it, they end up running spack install in an environment formed in this order:

source /etc/bash.bashrc                # (not 4). Bash interactive shell (default with TTY)
export AWS_SECRET=...                  #~1. Manually load environment from GitLab project variables
source spack/share/spack/setup-env.sh  # 2. Load Spack into the environment (PATH)
spack env activate -V concrete_env     # 3. Activate the concrete environment
spack install ...
The big problem being that (4) has a completely different position and content (on Leap 15 and possibly other containers).

So in context, this PR removes (4) from the CI job case, leaving us with the simpler:

export AWS_SECRET=...                  # 1. Load environment from GitLab project variables
source spack/share/spack/setup-env.sh  # 2. Load Spack into the environment (PATH)
spack env activate -V concrete_env     # 3. Activate the concrete environment
spack install ...
 2022-08-02 11:45:50 -07:00
Massimiliano Culpo
6e0b7959a4 Optimize reuse from buildcaches (#30806) 
* database: don't sort on return from query_local

* ASP-based solver: don't build the hash-lookup dictionary twice

Building this dictionary twice and traversing all the specs
might be time-consuming for large buildcaches.
 2022-08-02 11:43:14 -07:00
Massimiliano Culpo
aeac72e1e3 Style fixes 2022-08-02 10:52:52 -07:00
Massimiliano Culpo
0b832b2929 Remove line that sets non-existing attribute? 2022-08-02 10:52:52 -07:00
Massimiliano Culpo
2b3f350071 Use __slots__ for fast attribute access 2022-08-02 10:52:52 -07:00
Massimiliano Culpo
b6c8779772 Use __slots__ for fast attribute access during parsing 2022-08-02 10:52:52 -07:00
Harmen Stoppels
57e6452831 Document that reuse is higher priority than preferences in packages.yaml (#31864) 
Resurrect Known issues, since users ask frequently about that.
 2022-08-02 18:54:41 +02:00
Harmen Stoppels
3b4d1bdd31 py-pre-commit 2.20.0 2022-08-02 05:07:41 -07:00
Todd Gamblin
415ac29665 docs: Fix outdated pre-0.18 text on build dependencies (#31860) 2022-08-02 11:34:58 +00:00
Melven Roehrig-Zoellner
ac3b1d77fb gdb: add v12.1 (#31765) 2022-08-02 04:05:44 -06:00
Sebastian Ehlert
5533256dc6 Add mctc-lib v0.3.1 and toml-f v0.3.0 (#31847) 2022-08-02 08:03:00 +02:00
Adam J. Stewart
22d4612d94 Add meson Python build backend (#31809) 2022-08-02 07:55:41 +02:00
Adam J. Stewart
113acd4714 py-flake8: add v5.0 (#31854) 2022-08-02 07:44:02 +02:00
Adam J. Stewart
1a61252c64 spack checksum: black compliance (#31851) 2022-08-02 07:29:30 +02:00
eugeneswalker
df4e66ecde kokkos: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD (#31841) 
* kokkos@develop: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD

* use CMAKE_CXX_STANDARD regardless of kokkos version
 2022-08-01 23:12:32 +00:00
Peter Scheibel
c0ede0e0fa Add c++14 support flag for xl compiler (#31826) 2022-08-01 22:51:02 +00:00
Adam J. Stewart
77537fab82 lerc: add libs property (#31684) 2022-08-01 21:42:36 +00:00
Adam J. Stewart
d9d3438637 mxnet: prefer stable release (#31821) 2022-08-01 20:15:46 +00:00
Weiqun Zhang
2f34556f44 amrex: add v22.08 (#31844) 2022-08-01 19:40:02 +00:00
eugeneswalker
0fc045392b e4s oneapi stack: remove notes for now-fixed builds (#31839) 2022-08-01 12:03:39 -07:00
RichardABunt
d9c0080858 arm-forge: add v22.0.4. (#31835) 2022-08-01 19:53:30 +02:00
Adam J. Stewart
f018b869e6 Add support for macOS Ventura (#31812) 2022-08-01 16:45:56 +00:00
Adam J. Stewart
90dbfea895 python: fix clingo bootstrapping on Apple M1/M2 (#31792) 2022-08-01 15:48:07 +00:00
Seth R. Johnson
ae3c039908 celeritas: new package (#31834) 
ROOT also needs updating for downstream macOS packages
 2022-08-01 10:59:09 -04:00
Seth R. Johnson
2ec17288f3 py-breathe: fix version constraints to avoid concretizing old breathe (#31828) 2022-08-01 10:58:54 -04:00
Adam J. Stewart
c98d367a91 CUDA: add new GCC conflict (#31820) 2022-08-01 14:31:07 +00:00