James Smillie
40bf9a179b
New package: py-nuitka ( #44079 )
2024-05-10 12:07:02 -07:00
John W. Parent
095aba0b9f
Buildcache/ensure symlinks proper prefix ( #43851 )
...
* archive: relative links only
Ensure all links written into tarfiles generated from Spack prefixes do not contain symlinks pointing outside the prefix
* binary_distribution: limit extraction to prefix
Ensure files extracted from spackballs are not links pointing outside of the prefix
* Ensure rpaths are properly set on Windows
* hard error on extraction of absolute links
* refactor for non link-modifying approach
* Restore tarball extraction to original impl
* use custom readlink
* cleanup symlink module
* make lstrip
2024-05-10 13:00:40 -05:00
John W. Parent
4270136598
Windows: Non config changes to support Gitlab CI ( #43965 )
...
* Quote python for shlex
* Remove python path quoting patch
* spack env: Allow `C` "protocol" for config_path
When running spack on windows, a path beginning with `C://...` is a valid path.
* Remove makefile from ci rebuild
* GPG use llnl.util.filesystem.getuid
* Cleanup process_command
* Remove unused lines
* Fix tyop in encode_path
* Double quote arguments
* Cleanup process_command
* Pass cdash args with =
* Escape parens in CMD script
* escape parens doesn't only apply to paths
* Install deps
* sfn prefix
* use sfn with libxml2
* Add hash to dep install
* WIP
* REview
* Changes missed in prior review commit
* Style
* Ensure we handle Windows paths with config scopes
* clarify docstring
* No more MAKE_COMMAND
* syntax cleanup
* Actually correct is_path_url
* Correct call
* raise on other errors
* url2path behaves differently on unix
* Ensure proper quoting
* actually prepend slash in slash_hash
---------
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
2024-05-10 13:00:13 -05:00
Juan Miguel Carceller
f73d7d2dce
dd4hep: cleanup recipe, remove deprecated versions and patches ( #44110 )
...
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10 07:40:38 -07:00
Juan Miguel Carceller
567566da08
edm4hep: cleanup recipe, remove deprecated versions and patches ( #44113 )
...
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10 07:39:06 -07:00
Chris Marsh
30a9ab749d
libtheora: Remove unneeded autoreconf section ( #44063 )
...
* Remove autoreconf section that was causing issues with libtool mismatch. Fixes issue #43498
2024-05-10 10:27:20 -04:00
Mikael Simberg
8160a96b27
dla-future: Add 0.4.1 ( #44115 )
...
* dla-future: Add 0.4.1
* Use ninja as generator in dla-future
2024-05-10 15:21:47 +02:00
Mikael Simberg
10414d3e6c
pika: Add 0.25.0 ( #44114 )
2024-05-10 14:37:31 +02:00
Stephen Sachs
1d96c09094
libhugetlbfs: Fix the build with an update to 2.24 ( #44059 )
...
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-05-10 10:50:36 +02:00
Harmen Stoppels
e7112fbc6a
PythonExtension: fix issue where package does not extend python ( #44109 )
2024-05-10 10:47:37 +02:00
Tom Scogland
b79761b7eb
flux-sched: set the version if the ver file is missing ( #44068 )
...
* flux-sched: set the version if the ver file is missing
problem: flux-sched needs a version, it normally gets this from a
release tarball or from git tags, but if using a source archive or a git
clone without tags the version is missing
solution: set the version through cmake based on the version spack sees
when the version file is missing
* Update var/spack/repos/builtin/packages/flux-sched/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
---------
Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-09 11:50:42 -07:00
Christopher Christofi
3381899c69
miniforge3: add new versions with mamba installation ( #43995 )
...
* miniforge3: add new version with mamba installation
* fix styling
* update maintainers
* Fix variant directive ordering
2024-05-09 12:48:40 -06:00
Massimiliano Culpo
c7cf5eabc1
Fix filtering external specs ( #44093 )
...
When an include filter on externals is present, implicitly
include libcs.
Also, do not penalize deprecated versions if they come
from externals.
2024-05-09 18:50:15 +02:00
Juan Miguel Carceller
d88fa5cf8e
pythia8: add a cxxstd variant ( #44077 )
...
* pythia8: add a cxxstd variant
* Add multi=False, fix regexp
---------
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-09 09:32:38 -07:00
Richard Berger
2ed0e3d737
kokkos-nvcc-wrapper: add missing versions ( #44089 )
2024-05-09 09:23:16 -07:00
Julien Cortial
506a40cac1
mmg: Build & install shared libraries, add 5.7.2 & 5.7.3( #43749 )
2024-05-09 16:59:53 +02:00
Rémi Lacroix
447739fcef
Universal Ctags: Add version 6.1.20240505.0 ( #44058 )
2024-05-09 15:55:41 +02:00
Massimiliano Culpo
e60f6f4a6e
CI/Update macOS runners: macos-latest switched to macos-14 ( #44094 )
...
macos-latest switched to macos-14, so now we are running
two identical jobs.
2024-05-09 14:28:17 +02:00
Vanessasaurus
7df35d0da0
package: libsodium update URL to GitHub ( #44090 )
...
Problem: the libsodium download endpoints are not reliable,
they fail multiple times a day for several of our automated
pipelines.
Solution: use the GitHub releases and branches.
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2024-05-09 14:26:02 +02:00
Luc Berger
71b035ece1
Kokkos: adding new release 4.3.01 ( #44086 )
2024-05-09 03:33:35 -06:00
Ashwin Kumar Karnad
86a134235e
Octopus 14.1 : Add new version hash ( #44083 )
...
* octopus: add hash for new version
* octopus: add --enable-silent-deprecation flag when @14.1:
2024-05-09 03:18:22 -06:00
Jon Rood
24cd0da7fb
amr-wind: add missing variants ( #44078 )
...
* amr-wind: add missing variants
* Fix copy and paste.
* waves2amr is only available on amr-wind@2.0
* Style.
* Use satisfies.
2024-05-09 02:38:16 -06:00
alvaro-sch
762833a663
Orca (standalone) 5.0.4 ( #44011 )
...
* orca: added latest version 5.0.4
* Fixed openmpi versions
2024-05-08 15:36:27 -07:00
Ken Raffenetti
636d479e5f
mpich: Add license ( #43821 )
2024-05-08 12:07:46 -07:00
Sreenivasa Murthy Kolam
f2184f26fa
hipsparselt: new package ( #44080 )
...
* Initial commit for adding hipsparselt recipe
* correct the style errors
* remove master version
2024-05-08 12:03:21 -07:00
Harmen Stoppels
e1686eef7c
gcc: use -idirafter for libc headers ( #44081 )
...
GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc
headers. We're using `-isystem` for libc, which puts those headers too
early in the search path. `-idirafter` fixes this so `include_next`
works.
2024-05-08 20:45:04 +02:00
Adam J. Stewart
314893982e
JAX: add v0.4.27, NCCL variant ( #44071 )
2024-05-08 11:36:24 -07:00
Jake Koester
9ab6c30a3d
add flag to turn off building tests and examples ( #44075 )
2024-05-08 11:33:49 -07:00
Adam J. Stewart
ddf94291d4
py-jsonargparse: add v4.28.0 ( #44074 )
2024-05-08 11:31:07 -07:00
Jon Rood
5d1038c512
hypre: add cublas and rocblas variants ( #44038 )
...
* Add cublas and roblas variants to hypre.
* Fix mistakes.
* Remove newline.
* Address suggestions.
2024-05-08 12:04:11 -06:00
renjithravindrankannath
2e40c88d50
Bump up the version for ROCm-6.1.0 ( #43843 )
...
* Bump up the version for ROCm-6.1.0
* Style check error correction and patch files
* Update for rocm-openmp-extras 6.1
* updating rocm-openmp-extras and math libraries with 6.1
* Style check error correcion
* updating hipcub, hipfort & miopen-hip for 6.1
* Rocm-openmp-extras and some mathlib updates
* iAudit error correction and rocmlir update
* Updating dependency on suite-sparse and adding path
* Style check error corection
* hip-tensor 6.1.0 update
* rdc 6.1 needs grpc 1.59.1
* rvs 6.1 updates and patch
2024-05-08 10:26:30 -07:00
dependabot[bot]
2bcba57757
build(deps): bump actions/checkout from 4.1.4 to 4.1.5 ( #44045 )
...
Bumps [actions/checkout](https://github.com/actions/checkout ) from 4.1.4 to 4.1.5.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](0ad4b8fada...44c2b7a8a4
2024-05-08 09:22:48 -07:00
shanedsnyder
37330e5e2b
darshan-runtime,darshan-util,py-darshan: add darshan-3.4.5 packages ( #43989 )
...
* add darshan-3.4.5 packages, update URLs
* py-setuptools version switches for py-darshan
* more py-darshan test dependencies
* try a conditional importlib_resources dependency
2024-05-08 09:06:24 -07:00
snehring
b4411cf2db
iq-tree: add new version delete duplicate package ( #44043 )
...
* iq-tree: add new version delete duplicate package
* Replace iqtree2 dependency
orthofinder: replace iqtree2 with iq-tree@2
py-phylophlan: replace iqtree2 with iq-tree@2
2024-05-08 09:02:06 -07:00
Harmen Stoppels
65d1ae083c
gitlab ci: tutorial: add julia and vim ( #44073 )
2024-05-08 14:18:12 +02:00
andriish
0b8faa3918
cernlib: add 2023.08.14.0-free ( #40211 )
...
* Update CERNLIB
Update CERNLIB
* Update package.py
* Update package.py
* [@spackbot] updating style on behalf of andriish
* cernlib: merge crypto->crypt patches
* cernlib: depends_on xbae when `@2023:`
* cernlib: patch for Xbae and Xm link order (DSO)
* [@spackbot] updating style on behalf of andriish
---------
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-08 06:58:07 -05:00
Alec Scott
f077c7e33b
unmaintained pkg bump: 2024-05-05 ( #44021 )
...
* unmaintained pkgs: bump versions
* Changes following review feedback
* glm: update cmake dependency
---------
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-08 05:53:49 -06:00
Massimiliano Culpo
9d7410d22e
gcc: add v14.1.0 ( #44053 )
2024-05-08 12:14:44 +02:00
Tamara Dahlgren
e295730d0e
mold: Replace maintainer ( #44047 )
...
* Remove maintainer at his request
* Add msimberg as the maintainer
2024-05-08 09:29:43 +02:00
Todd Gamblin
868327ee14
r: patch R-CVE-2024-27322 for r@3.5:4.3.3 ( #44050 )
...
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-08 08:56:37 +02:00
Massimiliano Culpo
f5430b16bc
Bump removal version in deprecation messages ( #44064 )
2024-05-08 08:49:14 +02:00
Tamara Dahlgren
2446695113
Remove dead environment creation code ( #44065 )
2024-05-07 22:49:06 -06:00
snehring
e0c6cca65c
orca: switching to xz archives, removing old version ( #44035 )
2024-05-07 15:18:53 -07:00
Auriane R
84ed4cd331
Add transformer engine package ( #43982 )
...
* Add py-flash-attn@2.4.2
* Add py-transfomer-engine package
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-05-07 14:56:34 -07:00
Juan Miguel Carceller
f6d50f790e
gaudi: Add version 38.1 ( #44055 )
...
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-07 14:20:02 -07:00
Tim Haines
d3c3d23d1e
Dyninst: update compiler requirements ( #44033 )
...
As of 13.0.0, Dyninst can now build with any Linux compiler.
2024-05-07 15:03:17 -06:00
Vicente Bolea
33752c2b55
fix(adios2): fix missing stdind include in 2.7 ( #43786 )
2024-05-07 15:52:20 -05:00
Harmen Stoppels
26759249ca
gitlab: dont build paraview for neoverse v2 ( #44060 )
2024-05-07 18:59:12 +02:00
dependabot[bot]
8b4cbbe7b3
build(deps): bump pygments from 2.17.2 to 2.18.0 in /lib/spack/docs ( #44044 )
...
Bumps [pygments](https://github.com/pygments/pygments ) from 2.17.2 to 2.18.0.
- [Release notes](https://github.com/pygments/pygments/releases )
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES )
- [Commits](https://github.com/pygments/pygments/compare/2.17.2...2.18.0 )
---
updated-dependencies:
- dependency-name: pygments
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-07 18:55:04 +02:00
Richarda Butler
be71f9fdc4
Include concrete environments with include_concrete ( #33768 )
...
Add the ability to include any number of (potentially nested) concrete environments, e.g.:
```yaml
spack:
specs: []
concretizer:
unify: true
include_concrete:
- /path/to/environment1
- /path/to/environment2
```
or, from the CLI:
```console
$ spack env create myenv
$ spack -e myenv add python
$ spack -e myenv concretize
$ spack env create --include-concrete myenv included_env
```
The contents of included concrete environments' spack.lock files are
included in the environment's lock file at creation time. Any changes
to included concrete environments are only reflected after the environment
is re-concretized from the re-concretized included environments.
- [x] Concretize included envs
- [x] Save concrete specs in memory by hash
- [x] Add included envs to combined env's lock file
- [x] Add test
- [x] Update documentation
Co-authored-by: Kayla Butler <<butler59@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.co
m>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-07 09:32:40 -07:00
