Commit Graph

28729 Commits

Author SHA1 Message Date
Sergey Kosukhin
266453ce24
serialbox: enable building with NAG 7.1 (#32883) 2022-09-28 15:57:51 -06:00
Sergey Kosukhin
81f9a5b732
serialbox: patch to add missing include directives (#32880) 2022-09-28 10:33:59 -06:00
Manuela Kuhn
25a75ff9bf
py-filelock: add 3.8.0 and py-setuptools-scm: add 7.0.5 (#32846) 2022-09-28 10:09:59 -06:00
John W. Parent
650a668a9d
Windows: Support for Clingo and dependencies (#30690)
Make it possible to install the Clingo package on Windows; this
also provides a means to use Clingo with Spack on Windows.

This includes

* A new "winbison" package: Windows has a port of bison and flex where
  the two packages are grouped together. Clingo dependencies have been
  updated to use winbison on Windows and bison elsewhere (this avoids
  complicating the existin bison/flex packages until we can add support
  for implied virtuals).
* The CMake build system was incorrectly converting CMAKE_INSTALL_PREFIX
  to POSIX format.
* The re2c package has been modified to use CMake on Windows; for now
  this is done by overloading the configure/build/install methods to
  perform CMake-appropriate operations; the package should be refactored
  once support for multiple build systems in one Package is available.
2022-09-28 09:54:00 -06:00
iarspider
db2565cb53
Add checksum for py-ipywidgets 8.0.2, py-jupyterlab-widgets 3.0.3 (#32847)
* Add checksum for py-ipywidgets 8.0.2, py-jupyterlab-widgets 3.0.3, add py-jupyterpackaging10

* Apply changes from review

* Fix
2022-09-28 03:45:53 -06:00
Massimiliano Culpo
63dca0c6cc
Remove mentions of "best-effort" matrix expansion in the docs (#32755)
closes #20340
2022-09-28 09:15:36 +02:00
psakiev
ef43044672 Change name of variable 2022-09-27 22:17:29 -06:00
Adam J. Stewart
51feed16db
py-sphinx: add v5.2.0 (#32804)
* py-sphinx: add v5.2.0
* py-colorama: add v0.4.5
* 3.6 still supported
2022-09-27 21:13:49 -06:00
psakievich
da7294cd90
Update lib/spack/spack/test/config.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-27 21:08:32 -06:00
psakievich
addb891f42
Update lib/spack/docs/environments.rst
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-27 21:08:25 -06:00
Vicente Bolea
af1e62b0ac
vtkm: add v1.9.0-rc1, keep v1.8.0 preferred (#32858) 2022-09-27 17:41:48 -06:00
eugeneswalker
87b014ed13
e4s: use ubuntu 20.04 image and %gcc@9.4.0 (#32795) 2022-09-27 16:25:56 -06:00
Tom Scogland
d0136899a2 fix cmake cache package handling for hip workaround 2022-09-27 14:21:59 -07:00
Adam J. Stewart
90b86a2266
py-torch-geometric: add v2.1.0 (#32822)
* py-torch-geometric: add v2.1.0

* black

* Update homepage

* Add missing sklearn dep
2022-09-27 15:47:45 -05:00
psakievich
bce2d38bfc
Merge branch 'develop' into f/env-location 2022-09-27 14:40:57 -06:00
Alex Hornburg
67717c569e
shell.py: fix undefined variable in csh deactivate (#32816)
This commit fixes #27027.

The root cause of the issue is that the `SPACK_OLD_PROMPT` variable
was evaluated in string interpolation regardless of whether the
guard condition above evaluates to true or false. This commit uses
the `eval` keyword to defer evaluation until the command is executed.

Co-authored-by: Alexander Hornburg <alexande@xilinx.com>
2022-09-27 12:32:42 -07:00
Tom Scogland
2cae95334c avoid using realpath, readlink -f is more portable 2022-09-27 18:33:52 +00:00
psakiev
076d60ce35 Add check that env_root dir exists 2022-09-27 12:02:43 -06:00
psakiev
9ecdafd8de Add some documentation 2022-09-27 11:25:31 -06:00
psakievich
76fde639e8 Update lib/spack/spack/environment/environment.py
Co-authored-by: Greg Becker <becker33@llnl.gov>

Add back path canonicalization
2022-09-27 11:17:47 -06:00
psakiev
490b5eef7c Rework path access strategy 2022-09-27 10:57:28 -06:00
snehring
cb9f174a7f
zziplib: adding some missing build deps (#32833)
* zziplib: adding some missing build deps
2022-09-27 10:46:01 -06:00
Philipp Edelmann
f0ec6a994c
pgplot: install rbg.txt and change PGPLOT_DIR (#32775)
The file rbg.txt is needed for many PGPLOT application, such as the MESA
stellar evolution code. This change installs the file to the PGPLOT_DIR,
where the library expects it.

PGPLOT_DIR was previously set to the prefix itself, which is an odd
place to install rgb.txt. This commit changes it to lib/pgplot5,
following the convention used by Debian.

Co-authored-by: Philipp Edelmann <edelmann@fs.tum.de>
2022-09-27 09:44:19 -07:00
Laurent Aphecetche
384ff70b0d
root: add arrow variant (#32837) 2022-09-27 09:26:22 -07:00
Michael Kuhn
9c1d6da111
strace: add 5.19 (#32844) 2022-09-27 08:45:28 -07:00
Manuela Kuhn
0c49ee939b
py-executing: add 1.1.0 (#32840) 2022-09-27 10:42:58 -05:00
Manuela Kuhn
086dc66653
py-exifread: add 3.0.0 (#32841) 2022-09-27 10:41:59 -05:00
Manuela Kuhn
608d20446d
py-fasteners: add 0.18 (#32843) 2022-09-27 10:39:08 -05:00
Manuela Kuhn
b7a43bf515 py-fastjsonschema: add 2.16.2 (#32845) 2022-09-27 10:38:02 -05:00
Stefano Bertone
ae627150b2
cgal: depends on for older versions (#32802)
* cgal: depends on for older versions
* Update package.py

Co-authored-by: steo85it <steo85it@users.noreply.github.com>
2022-09-27 08:32:16 -07:00
iarspider
9f271fa388
hwloc: replace 'shared' variant with 'libs' (#32093)
* hwloc: replace 'shared' variant with 'libs'
* PEP-8
* Fix gpi-space
2022-09-27 05:53:57 -06:00
psakiev
3f2e77e5fa Allow users to specify root env dir
Environments managed by spack have some advantages over anonymous Environments
but they are tucked away inside spack's directory tree. This PR gives
users the ability to specify where the environments should live.

See #32823
2022-09-26 22:31:29 -06:00
Adam J. Stewart
43ceff4193
py-libclang: add v14 (#32824) 2022-09-26 17:21:52 -06:00
Chris White
777271da18
improve lexing error (#32832) 2022-09-26 22:47:45 +00:00
Pak Lui
de9fc038f7
add ROCmPackage to OSU Micro Benchmarks (#32806) 2022-09-26 14:26:58 -07:00
iarspider
b192e3492c
Add checksum for py-nbconvert 7.0.0, py-mistune 2.0.4 (#32817) 2022-09-26 14:02:06 -06:00
Jean Luca Bez
f64ca7bc6a
hdf5-vol-async: fix path needed for h5bench (#32805)
* fix path needed for h5bench
* Update var/spack/repos/builtin/packages/hdf5-vol-async/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-26 12:21:45 -06:00
Laurent Aphecetche
a077b2b0ee
vmc: add versions 1-1-p1 and 2-0 (#32703)
* vmc: add versions 1-1-p1 and 2-0
* Update var/spack/repos/builtin/packages/vmc/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-26 11:02:10 -07:00
Valentin Volkl
b6be1f3520
hoppet: fix typo in hep tag (#32820) 2022-09-26 11:26:05 -06:00
Manuela Kuhn
94435778ba
py-datalad-metalad: add 0.4.5 and new package py-datalad-metadata-model (#32811)
* py-datalad-metalad: add 0.4.5

* Update var/spack/repos/builtin/packages/py-datalad-metalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-26 11:25:43 -06:00
Manuela Kuhn
f8e23b4fbe
py-cryptography: add 38.0.1 (#32809)
* py-cryptography: add 38.0.1

* Fix rust dependency
2022-09-26 10:38:01 -06:00
Alberto Invernizzi
b1fda5dd64
add neovim version 0.7.2 (#32815) 2022-09-26 09:10:38 -07:00
akhursev
5fbbc5fa68
2022.3 oneAPI release promotion (#32786)
In addition to the new release, made intel-oneapi-compilers-classic version number match the compiler version number, instead of the version of the package that contains it.

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2022-09-26 10:01:59 -06:00
Seth R. Johnson
494946d020
celeritas: new versions 0.1.2,3 (#32803) 2022-09-26 08:50:14 -07:00
Manuela Kuhn
7c5a417bb3
py-bottleneck: add 1.3.5 and py-versioneer: add 0.26 (#32780)
* py-bottleneck: add 1.3.5

* Fix sha256 for version 0.18

* Fix python dependency
2022-09-26 10:47:37 -05:00
Manuela Kuhn
beab39eb3c
py-coverage: add 6.4.4 (#32789)
* py-coverage: add 6.4.4

* Fix python version in +toml variant
2022-09-26 10:46:23 -05:00
Manuela Kuhn
100eb5014a
py-datalad-container: add 1.1.7 (#32810) 2022-09-26 10:42:25 -05:00
Laurent Aphecetche
a5bf7f458d
root: make X11 really optional on macOS (#32661)
* root: make X11 really optional on macOS
* Update var/spack/repos/builtin/packages/root/package.py
* remove when clauses in provides

Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2022-09-26 08:37:21 -07:00
Manuela Kuhn
b961cfa8d6
py-debugpy: add 1.6.3 (#32812) 2022-09-26 10:35:59 -05:00
Manuela Kuhn
07157306b2
py-distro: add 1.7.0 (#32813) 2022-09-26 10:34:43 -05:00