Commit Graph

22295 Commits

Author SHA1 Message Date
Harmen Stoppels
cf6aeace42 openblas: add perl as a build dependency (#21908) 2021-02-25 13:38:15 +01:00
Harmen Stoppels
a42d5357c3 libxc: add perl as a build dependency (#21906) 2021-02-25 13:34:09 +01:00
Harmen Stoppels
a258d40c28 kcov: add missing dependency (#21932)
kcov CMakeLists.txt generates the "kcov" executable only if
certain dependencies are found. These dependencies are 
"libbfd", "libopcodes" and "libiberty", hence the dependency 
on binutils.
2021-02-25 11:55:56 +01:00
Adam J. Stewart
127a630ba3 py-numcodecs: add v0.7.3, apple clang patch (#21944)
* py-numcodecs: add new version, apple clang patch

* py-numcodecs: add new version, apple clang patch
2021-02-25 11:33:38 +01:00
Adam J. Stewart
719bdb1673 py-cfgrib: new package at v0.9.8.5 (#21946) 2021-02-25 11:32:56 +01:00
Adam J. Stewart
7a3d216318 py-h5netcdf: new package at v0.10.0 (#21947) 2021-02-25 11:32:26 +01:00
Adam J. Stewart
8ec646b6b1 py-webob: new package at v1.8.7 (#21949) 2021-02-25 10:31:33 +00:00
Mosè Giordano
1a11a17453 libblastrampoline: Add version 3.0.0 (#21939) 2021-02-25 05:08:37 +00:00
Desmond Orton
ce5e2b5368 New package r-spades-core at 1.0.5 (#21782) 2021-02-25 05:04:04 +00:00
eugeneswalker
1d7fc4cbe1 llvm-doe+lldb: @doe: fix improper set of LLDB_ENABLE_PYTHON (#21935) 2021-02-24 19:59:12 -08:00
Adam J. Stewart
2b201ba401 Overhaul xgboost packages (#21661)
* Overhaul xgboost packages
* Don't deprecate xgboost 0.90
* Add py-xgboost@0.90, but deprecate it
* extras_require added in 1.0.0
* Deprecate py-dask-xgboost
* Simplify setting cuda arch
2021-02-25 03:42:17 +00:00
Matthijs van Waveren
d55384a46d libjpeg: add version 9d (#21819)
* Update package libjpeg

* Change order and remove empty line.

* emove space
2021-02-25 03:20:04 +00:00
Adam J. Stewart
79e575067c font-util: fix typo in default fonts (#21933) 2021-02-25 03:10:27 +00:00
Adam J. Stewart
f74670e210 py-azureml-dataprep: add new version (#21919) 2021-02-25 00:31:05 +00:00
Desmond Orton
e554433ca9 New package r-qs at 0.23.5 (#21779) 2021-02-24 23:12:56 +00:00
Olivier Cessenat
92a4576644 Silo: fix build errors with +silex on ubuntu18.04(#21877) 2021-02-24 15:45:53 -05:00
Rémi Lacroix
d153978fc7 Silo: Update URLs (#21880) 2021-02-24 20:41:04 +00:00
Massimiliano Culpo
29201814cc Run clingo-cffi tests in a container (#21913)
There clingo-cffi job has two issues to be solved:

1. It uses the default concretizer
2. It requires a package from https://test.pypi.org/simple/

The former can be fixed by setting the SPACK_TEST_SOLVER
environment variable to "clingo".

The latter though requires clingo-cffi to be pushed to a
more stable package index (since https://test.pypi.org/simple/
is meant as a scratch version of PyPI that can be wiped at
any time).

For the time being run the tests in a container. Switch back to
PyPI whenever a new official version of clingo will be released.
2021-02-24 12:33:14 -08:00
Adam J. Stewart
58241c2bbd py-azureml-train: add new version (#21929) 2021-02-24 21:15:35 +01:00
Adam J. Stewart
c54f3aca39 py-azureml-train-restclients-hyperdrive: add new version (#21928) 2021-02-24 21:15:24 +01:00
Adam J. Stewart
7e6b3344d8 py-azureml-train-core: add new version (#21927) 2021-02-24 21:15:02 +01:00
Adam J. Stewart
ec81005716 py-azureml-train-automl-client: add new version (#21926) 2021-02-24 21:14:52 +01:00
Adam J. Stewart
7ca5eb8976 py-azureml-telemetry: add new version (#21925) 2021-02-24 21:14:30 +01:00
Adam J. Stewart
64d44f2fa4 py-azureml-sdk: add new version (#21924) 2021-02-24 21:14:12 +01:00
Adam J. Stewart
5506777052 py-azureml-pipeline: add new version (#21923) 2021-02-24 21:13:56 +01:00
Adam J. Stewart
c947b5e43e py-azureml-pipeline-steps: add new version (#21922) 2021-02-24 21:13:43 +01:00
Adam J. Stewart
d11052603e py-azureml-pipeline-core: add new version (#21921) 2021-02-24 21:13:29 +01:00
Adam J. Stewart
a470064a6a py-azureml-dataset-runtime: add new version (#21920) 2021-02-24 21:13:11 +01:00
Adam J. Stewart
ae09be9cdc py-azureml-dataprep-native: add new version (#21918) 2021-02-24 21:11:39 +01:00
Adam J. Stewart
b9e445cb56 py-azureml-core: add new version (#21917) 2021-02-24 21:11:13 +01:00
Adam J. Stewart
49985316ab py-azureml-automl-core: add new version (#21916) 2021-02-24 21:10:39 +01:00
Adam J. Stewart
86d3b062fe py-azureml-dataprep-rslex: add new package (#21915) 2021-02-24 21:10:22 +01:00
eugeneswalker
dff08f327f libcircle: needs libpciaccess (link dep) (#21648) 2021-02-24 20:35:00 +01:00
eugeneswalker
e3b3faca70 rempi-needs-libpciaccess (link dep) (#21652) 2021-02-24 20:34:22 +01:00
Desmond Orton
369e6e25ac New package r-rapiserialize at 0.1.0 (#21780) 2021-02-24 19:15:49 +00:00
Paul Ferrell
e85a8cde37 Config prefer upstream (#21487)
This allows for quickly configuring a spack install/env to use upstream packages by default. This is particularly important when upstreaming from a set of officially supported spack installs on a production cluster. By configuring such that package preferences match the upstream, you ensure maximal reuse of existing package installations.
2021-02-24 10:57:50 -08:00
kuramoto-fj
d65002a676 n2p2: Add new package (#21709)
* n2p2: Add new package

* remove ,

* Resurrection of , and changed " to single

* changed example.command to example.co

* n2p2: Added v2.1.1

* n2p2: Changed the type of depends_on.
2021-02-24 10:35:27 -06:00
Harmen Stoppels
e53595c0dc Fix target selection in rocfft (#21858) 2021-02-24 10:42:09 +01:00
Harmen Stoppels
4a9c8ec1ad HIP: document variables, apply patches to older versions, fix build issues (#21852)
Since there are many variables being set I thought it would be a good idea to document them better and slightly simplify the logic for external vs not-external.
2021-02-24 10:37:16 +01:00
Robert Blake
0389f51bd7 numactl: no-op needed if configure can't find TLS (#21894)
* numactl: Bash needs no-op if configure can't find TLS

* Upstream has fix, will be out in next version.

https://github.com/numactl/numactl/pull/103
2021-02-23 19:13:22 -08:00
Desmond Orton
61c8bc2b19 New package r-circstat@0.2-6 (#21777) 2021-02-23 20:57:22 -06:00
Desmond Orton
df3caef9aa New package r-fastdigest at 0.6-3 (#21778) 2021-02-23 20:54:19 -06:00
Scott Wittenburg
ee5992783c Gitlab fix pr workflow (#21786)
Fixes for gitlab pipelines

* Remove accidentally retained testing branch name
* Generate pipeline w/out debug mode
* Make jobs interruptible for auto-cancel pending
* Work around concretization conflicts
2021-02-23 19:19:06 -07:00
Desmond Orton
a7ddaa67de New version r-stringfish at 0.14.2 (#21785) 2021-02-23 20:16:08 -06:00
Rémi Lacroix
f6b61621e5 Sph2pipe: Update URL (#21886) 2021-02-23 18:13:08 -08:00
Carlos Bederián
e841a41357 julia: Add 1.5.3 (#21891) 2021-02-23 18:06:29 -08:00
Josh Essman
93ed1a410c Updates to support clingo-cffi (#20657)
* Support clingo when used with cffi

Clingo recently merged in a new Python module option based on cffi.

Compatibility with this module requires a few changes to spack - it does not automatically convert strings/ints/etc to Symbol and clingo.Symbol.string throws on failure.

manually convert str/int to clingo.Symbol types
catch stringify exceptions
add job for clingo-cffi to Spack CI
switch to potassco-vendored wheel for clingo-cffi CI
on_unsat argument when cffi
2021-02-23 23:46:37 +00:00
Phil Tooley
6622856076 use package supplied autogen.sh (#20319) 2021-02-23 15:20:49 -08:00
Nathan Hanford
8ef67e2b15 New splice method in class Spec. (#20262)
* Spec.splice feature

Construct a new spec with a dependency swapped out. Currently can only swap dependencies of the same name, and can only apply to concrete specs.

This feature is not yet attached to any install functionality, but will eventually allow us to "rewire" a package to depend on a different set of dependencies.

Docstring is reformatted for git below

Splices dependency "other" into this ("target") Spec, and return the result as a concrete Spec.

If transitive, then other and its dependencies will be extrapolated to a list of Specs and spliced in accordingly.

For example, let there exist a dependency graph as follows:

        T
        | \
        Z<-H

In this example, Spec T depends on H and Z, and H also depends on Z.

Suppose, however, that we wish to use a differently-built H, known as H'. This function will splice in the new H' in one of two ways:

1. transitively, where H' depends on the Z' it was built with, and the new T* also directly depends on this new Z', or
2. intransitively, where the new T* and H' both depend on the original Z.

Since the Spec returned by this splicing function is no longer deployed the same way it was built, any such changes are tracked by setting the build_spec to point to the corresponding dependency from the original Spec.

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-02-23 13:56:00 -08:00
ketsubouchi
21349a4d25 redland bindings: new package at v1.0.17.1 (#21838) 2021-02-23 21:36:34 +01:00