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Author SHA1 Message Date
eugeneswalker
dfbeaff8ae remove outdated comments (#33123) 2022-10-07 19:47:57 -07:00
iarspider
8309ae08d1 Add checksum for py-jupyter-core 4.11.1 (#33086) 2022-10-07 16:06:11 -06:00
Sergey Kosukhin
4bc8f66388 autotools: extend patching of the libtool script (#30768) 
* filter_file: introduce argument 'start_at'

* autotools: extend patching of the libtool script

* autotools: refactor _patch_usr_bin_file

* autotools: improve readability of the filtering

* autotools: keep the modification time of the configure scripts

* autotools: do not try to patch directories

* autotools: explain libtool patching for posterity

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-10-07 22:04:44 +00:00
iarspider
8a5790514d Add checksum for py-nbclient 0.6.7 (#33083) 2022-10-07 15:58:03 -06:00
eugeneswalker
01e7b89b53 e4s ci: add variorum (#33113) 2022-10-07 14:52:30 -07:00
eugeneswalker
041c1486f8 e4s ci: add h5bench (#33114) 2022-10-07 14:52:08 -07:00
Jen Herting
cbc224852b [brotli] added version 1.0.9 (#33107) 2022-10-07 15:33:07 -06:00
Jen Herting
5560bbf97e New package: py-pathml (#32566) 
* [py-pathml Farber] Created package

* [pathml Farber] Dependencies added

* [py-pathml] Corrected dependency

* [py-pathml] Added types

* [py-pathml] depends on py-h5py

* [py-pathml] py-opencv-contrib-python -> opencv+python3+contrib

* [py-pathml] added spack import and fixed setuptools type

* [py-pathml] update import

* [py-pathml] opencv no longer has +contrib

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-10-07 15:32:43 -06:00
Gregory Lee
b3cfcebf94 fixed and added mrnet versions (#33120) 2022-10-07 14:25:53 -06:00
iarspider
f3027fb561 Add checksum for py-onnxmltools 1.11.0 (#33104) 
* Add checksum for py-onnxmltools 1.11.0

* Add checksum for py-onnxmltools 1.11.0

* Fix patch name

* Update var/spack/repos/builtin/packages/py-onnx-runtime/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-10-07 14:05:52 -05:00
iarspider
af4134dd48 Add checksum for py-pkginfo 1.8.3 (#33094) 
* Add checksum for py-pkginfo 1.8.3

* Update var/spack/repos/builtin/packages/py-pkginfo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-10-07 13:02:13 -06:00
iarspider
3270df735f Add checksum for py-markdown 3.4.1 (#33098) 
* Add checksum for py-markdown 3.4.1

* Update package.py
 2022-10-07 13:01:54 -06:00
Laurent Aphecetche
a2d7776c95 pythia6: set CMAKE_MACOSX_RPATH=True to build on macos (#33082) 2022-10-07 11:53:41 -07:00
iarspider
a4651a2a02 Add checksum for py-pathlib2 2.3.7.poast1 (#33105) 
* Add checksum for py-pathlib2 2.3.7.poast1

* [@spackbot] updating style on behalf of iarspider

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
 2022-10-07 13:47:26 -05:00
iarspider
910cf7fe7b Add checksum for py-python-ldap 3.4.2 (#33106) 2022-10-07 13:46:09 -05:00
iarspider
fb0d8cd151 Add checksum for py-networkx 2.8.6, py-pygraphviz 1.10 (#33102) 
* Add checksum for py-networkx 2.8.6, py-pygraphviz 1.10

* [@spackbot] updating style on behalf of iarspider

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
 2022-10-07 13:39:56 -05:00
iarspider
c5e3ec8b1f Add checksum for py-mplhep 0.3.26 (#33101) 2022-10-07 13:37:17 -05:00
iarspider
e81ecae3b5 Add checksum for py-more-itertools 8.14.0 (#33100) 2022-10-07 13:36:11 -05:00
iarspider
ce7461a783 Add checksum for py-lz4 4.0.2 (#33097) 2022-10-07 13:32:34 -05:00
iarspider
f141f806e9 Add checksum for py-llvmlite 0.38.1 (#33096) 2022-10-07 13:31:31 -05:00
iarspider
3968263bf6 Add checksum for py-jupyter-console 6.4.4 (#33088) 2022-10-07 12:54:58 -05:00
iarspider
9de9d2f65b Add checksum for py-jsonpickle 2.2.0 (#33087) 2022-10-07 12:53:44 -05:00
Adam J. Stewart
163242bd6e py-black: add v22.10.0 (#33077) 2022-10-07 10:33:04 -07:00
eugeneswalker
35bc158387 e4s ci: add quantum-espresso (#33075) 2022-10-07 08:38:10 -07:00
Auriane R
39fe4371fa Rename p2300 to stdexec (#33099) 
* Rename p2300 package after renaming PR merged in stdexec

https://github.com/NVIDIA/stdexec/pull/622

* Adapt pika to depend on stdexec
 2022-10-07 14:54:05 +02:00
Paul Kuberry
2346544e6f trilinos and xyce: fix fortran library handling (#33033) 
* trilinos and xyce: fix fortran library handling

xyce:
  - add pymi_static_blas variant and logic
    handles blas and hdf5 conflicts for Xyce-PyMi
  - make +isorropia and +zoltan conditional on mpi

* xyce: clean up CMake options

* xyce: change pymi_static_blas to pymi_static_tpls

* xyce: made pymi_static_tpls only when +pymi
 2022-10-07 06:47:26 -04:00
iarspider
8acb4da6aa Add checksum for py-tornado 6.2, py-pyzmq 24.0.1, py-jupyter-client 7.3.5 (#33062) 2022-10-07 00:09:56 -06:00
Laurent Aphecetche
837954729f geant3: new package (#33065) 
* geant3: new package
* fix copyright
 2022-10-06 22:26:22 -06:00
MatthewLieber
23f6c92f33 add compatibility for rocky8 and rhel8 (#33068) 2022-10-07 04:25:58 +00:00
Hans Fangohr
a661536eb6 oommf: update oommf package to version 2.0b0 (#33072) 
- Official release mentioned on https://math.nist.gov/oommf/software-20.html
- Tested at https://github.com/fangohr/oommf-in-spack/pull/39/files
 2022-10-06 18:30:27 -07:00
Laurent Aphecetche
080c37046f cppgsl: add version 4.0.0 (#33060) 2022-10-06 18:24:01 -07:00
Jonas Thies
f56ff16564 phist: add patch to resolve build issue #32111 with +fortran %oneapi (#32965) 
* phist: add patch to resolve build issue #32111 with +fortran %oneapi

* phist: some lines of code were patched twice, make these patches orthogonal.
 2022-10-06 16:16:48 -07:00
Massimiliano Culpo
1a12ddbd2d Add a warning on Python 2.7 deprecation (#33052) 
Co-authored-by: alalazo <alalazo@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
 2022-10-06 23:42:34 +02:00
snehring
f43887dd4e ncbi-toolkit: adding version 26_0_1 (#33061) 2022-10-06 12:26:25 -07:00
Sergey Kosukhin
a520a7ef28 tcl module template: automatically unload automatically loaded modules (#32853) 
Remove `module-info mode load` condition that prevents auto-unloading when autoloading is enabled. It looks like this condition was added to work around an issue in environment-modules that is no longer necessary.

Add quotes to make is-loaded happy
 2022-10-06 20:15:28 +02:00
iarspider
c3018f95ee Add checksum for py-executing 1.0.0 (#33059) 2022-10-06 10:25:54 -06:00
iarspider
164d5fc7a4 Add checksum for py-histogrammar 1.0.31 (#33045) 2022-10-06 09:52:38 -05:00
iarspider
38b50079e1 Add checksum for py-uhi 0.3.1 (#33043) 2022-10-06 09:51:28 -05:00
iarspider
e67a19cb36 Add checksum for py-tqdm 4.64.1 (#33046) 2022-10-06 09:50:24 -05:00
iarspider
7e1cb5414c Add checksum for py-zipp@3.8.1 (#33048) 2022-10-06 09:47:56 -05:00
iarspider
5c5de3e683 Update py stack data (#33051) 
* Add checksum for py-traitlets 5.3.0

* Add checksum for py-stack-data 0.5.0

* Remove extra file
 2022-10-06 09:41:16 -05:00
Laurent Aphecetche
ca0e023c43 geant4-vmc: unset MACOSX_DEPLOYMENT_TARGET (#32828) 2022-10-06 10:41:08 -04:00
Sergey Kosukhin
70a3868168 ncl: enable building with recent versions of hdf5 (#32842) 2022-10-06 16:20:55 +02:00
iarspider
f168a44fcb Add checksum for py-urllib3 1.26.12 (#33019) 
* Add checksum for py-urllib3 1.26.12

* Update var/spack/repos/builtin/packages/py-urllib3/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixes from review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-10-06 07:38:00 -06:00
Harmen Stoppels
c959d6c905 gmake: add 4.3.90 alpha release (#33044) 
GNU Make 4.3.90 supports jobserver through fifo, so it's nice to add the
alpha release to Spack already.
 2022-10-06 04:34:00 -06:00
Manuela Kuhn
4cfe58651a py-docutils: add 0.19 (#32814) 2022-10-06 04:29:48 -06:00
eugeneswalker
a56cd8ffb6 e4s ci: add charliecloud (#32990) 2022-10-06 12:22:23 +02:00
Sreenivasa Murthy Kolam
5cf05b6515 mlirmiopen: update the SHA for 5.2.1 release (#33049) 2022-10-06 03:54:03 -06:00
Harmen Stoppels
fc5da74998 docs: fix deprecated use of install_tree (#33004) 2022-10-06 09:45:46 +00:00
iarspider
0bc23d8bdc Add checksum for py-markupsafe 2.1.1 (#33003) 2022-10-06 03:42:01 -06:00