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9e1341a1627ea4e0341386e1e5a7ed40cadd3577
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4652 Commits

Author SHA1 Message Date
Erik Schnetter
b4da4425ff Add header files to lrslib install 2016-06-19 13:47:02 -04:00
Erik Schnetter
fa471a4ed1 Add missing header files to Bliss install 2016-06-19 13:46:38 -04:00
Erik Schnetter
d8b9cda632 Build Bliss both with and without GMP 2016-06-19 12:48:47 -04:00
Denis Davydov
cf4a34c657 openmpi: raise an error without Fortran compiler 2016-06-19 11:59:29 +02:00
Denis Davydov
1cc04cff27 openblas: raise an error without Fortran compiler 2016-06-19 11:59:10 +02:00
Erik Schnetter
71e92774eb New package cddlib 2016-06-18 22:47:59 -04:00
Erik Schnetter
8fa8fc239f New package "nauty and Traces" 2016-06-18 22:22:58 -04:00
Erik Schnetter
e5b08544ff New package Panda 2016-06-18 22:02:36 -04:00
Erik Schnetter
2009354719 Add fourier tool to lrslib 2016-06-18 21:38:15 -04:00
Erik Schnetter
a5086f474e New package lrslib 2016-06-18 18:03:09 -04:00
Erik Schnetter
92a7c0ddd5 Update Bliss to use -O3 2016-06-18 18:02:52 -04:00
Erik Schnetter
64aaf7ba81 New package cdd 2016-06-18 16:37:08 -04:00
Erik Schnetter
83d4cdc090 Update Bliss 2016-06-18 16:36:43 -04:00
Erik Schnetter
a07056d67b Add Bliss package 2016-06-18 16:20:37 -04:00
Adam J. Stewart
652a5eb592 Allow py-pillow to link to Spack-built libraries 2016-06-17 18:09:03 -05:00
Todd Gamblin
62b2f2a7c9 Merge pull request #1065 from epfl-scitas/packages/espresso_update 
espresso : update to 5.4.0
 2016-06-17 14:51:45 -07:00
Todd Gamblin
9a8d109650 Merge pull request #1044 from adamjstewart/features/sncosmo 
Add py-sncosmo package
 2016-06-17 14:50:37 -07:00
Todd Gamblin
0bbbfc2ef7 Merge pull request #946 from LLNL/features/intel2 
Intel software packages and license enhancements
 2016-06-17 14:28:39 -07:00
Adam J. Stewart
536fa73d5f Python flake8 overhaul 2016-06-17 13:33:09 -05:00
Robert D. French
448f8c43d4 Added working Ferret spec 
Fixed ferret spec. It builds now

Made ferret spec more flake8-y

Fixed homepage and info text about Ferret

Removed vim swap file

Reverted changes to netcdf-fortran spec and added netcdf~mpi dependency to ferret spec to compensate for it

Fixed flake8 issues!
 2016-06-17 14:23:50 -04:00
Adam J. Stewart
80d444624b Fix activation of sites.py for sncosmo 2016-06-17 11:08:16 -05:00
Adam J. Stewart
24f65c502e Add additional Astropy dependencies 2016-06-17 10:45:10 -05:00
Adam J. Stewart
b2aa78d6ab Remove version constraints 2016-06-17 10:45:10 -05:00
Adam J. Stewart
4eeaff175c Allow packages to build 2016-06-17 10:44:28 -05:00
Adam J. Stewart
a660c60eb1 Add py-sncosmo package 2016-06-17 10:43:34 -05:00
Glenn Johnson
8970785d33 Add 'jdk' as a dependency. 
Add jdk as a dependency so that R has support for java and allow
packages that need java to work.
 2016-06-16 23:08:55 -05:00
Glenn Johnson
a813f03955 Add list_url for old versions. 2016-06-16 23:08:55 -05:00
Glenn Johnson
4850b9d4d1 Make install comment consistent with actual call. 2016-06-16 23:08:55 -05:00
Glenn Johnson
7da405e630 Add validator for bioconductor packages 
This commit adds a validator function to make sure the versions of R and
bioconductor are in sync.
 2016-06-16 23:08:55 -05:00
Glenn Johnson
7213b12324 Tweak how R packages are built. 
Add bzip2 as a dependency to base R.

Switch from installing the R packages from tar files to installing from
the extracted directory. This is more in line with a standard install
and also allows installing from VCS.

Use the Bioconductor version for BiocGenerics and future Bioconductor
packages. Suffix the package with 'bioc-$version' to indicate which
Bioconductor release the package is a part of. This is actually more
important than the actual version attached to individual packages
although those are subject to change within the Bioconductor branch.
 2016-06-16 23:08:55 -05:00
Glenn Johnson
0e64c25ffc Fix flake8 errors 
Use Bioconductor provided Short URL for homepage in BiocGenerics.
Wrap description text for utf variant in pcre.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
37dc13edaf Update version of BiocGenerics 
The BioConductor repositories only keep the most recent version so this
has to be bumped.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
8704a4ed35 Use configure_args rather than options 
Replaced 'options' with 'configure_args'. That seems like a better name
and is consistent with the packaging guide.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
fe256870b4 Add variant for UTF support to pcre 
This will build PCRE with UTF support by default. That seems to be
reasonable for most environments.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
cb3505769b Clean up R extensions 
Run the existing R extension packages through autopep8 to clean up.
 2016-06-16 23:07:13 -05:00
Glenn Johnson
6649f9edc2 Add version 3.3.0 of R 
This commit adds the 3.3.0 version of R and adds dependencies on curl
and pcre.
 2016-06-16 23:07:13 -05:00
Glenn Johnson
64acbbfcf0 Clean up R package files 
- remove unused imports
- apply pep8
- reformat text strings
 2016-06-16 23:07:13 -05:00
Todd Gamblin
9ee6cbfb40 Merge pull request #944 from adamjstewart/features/bertini 
Add bertini package
 2016-06-16 16:57:50 -07:00
Todd Gamblin
344280154a Merge pull request #962 from adamjstewart/features/hpl 
Add HPL benchmark package
 2016-06-16 16:57:24 -07:00
Todd Gamblin
88b73bacdb Merge branch 'features/newarch' into develop 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
 2016-06-16 03:03:26 -07:00
alalazo
a1cbb73f8b qa : fixed flake8 issues 2016-06-16 11:24:18 +02:00
alalazo
8d9ffcf565 espresso : updated to 5.4.0, added Parallel=False 2016-06-16 11:22:26 +02:00
Todd Gamblin
76dfaa71a7 fix up packages for new architecture. 2016-06-16 01:47:20 -07:00
Todd Gamblin
40d25d9062 Add libxcb dependencies. Fix up packages to get py-basemap and stat to build. 2016-06-16 00:56:53 -07:00
Erik Schnetter
a7ab064a9e Update OpenMPI to 1.10.3 2016-06-15 18:05:23 -04:00
Massimiliano Culpo
daa46105a7 mpich based providers : shortened filter_compilers 2016-06-15 21:37:12 +02:00
Adam J. Stewart
44e188f111 Remove MPI support, fix INCLUDE filters 2016-06-15 14:17:30 -05:00
Adam J. Stewart
7b97ea248a More template filtering 2016-06-15 14:17:29 -05:00
Adam J. Stewart
9cf1257be4 Filter compilers 2016-06-15 14:17:29 -05:00
Adam J. Stewart
deb4f919cf Psi4 tweaks 2016-06-15 14:17:29 -05:00