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Author SHA1 Message Date
t-nojiri
567caafc58 dmtcp: Fix for aarch64 (#19246) 2020-10-18 20:24:51 -05:00
Jason Miller
25f817b8ae Fix for buildcache -o (#19354) 
* Fix for buildcache -o

The method has more positional arguments than the caller expects.

* Address length issue.

Fix pylint/flake errors.
 2020-10-18 19:40:28 -05:00
Adam J. Stewart
02575cb3bb bash: add ssh flag (#18992) 
* bash: add flag on macOS

* Add flag unconditionally
 2020-10-18 17:40:32 -04:00
Adam J. Stewart
c3f8df7c52 py-scipy: added v1.5.3 (#19353) 2020-10-18 16:15:23 +02:00
Stephen Hudson
c8581989d5 Update libensemble to v0.7.1 (#19349) 
* Update libensemble to v0.7.1

* Update var/spack/repos/builtin/packages/py-libensemble/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-10-17 19:00:54 -05:00
Nichols A. Romero
8619e5b5ab Removing classic flang. (#19350) 2020-10-17 15:27:09 -05:00
Ryan Mast
1a63baef4d helics: Add version 2.6.1 (#19348) 2020-10-17 15:23:40 -05:00
Omri Mor
bff0291dac Spec: fix multiple generator iteration in satisfies_dependencies (#18527) (#18559) 2020-10-17 11:40:31 +02:00
Nichols A. Romero
1a6c5ff541 Add LLVM 11.0.0 (#19309) 
* Add LLVM 11.0.0

* This longdouble patch was merged in.
 2020-10-16 23:02:57 -05:00
manifest
89332361ba gemini dep py-geneimpacts + (#19334) 2020-10-16 16:32:59 -05:00
iarspider
da71e9e88e Fix tar detection (missing import: re) (#19338) 
Co-authored-by: iarspider <iarpsider@gmail.com>
 2020-10-16 16:31:40 -05:00
iarspider
7296f8c628 Add external package support to xz (#19339) 
* Add external package support to xz

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
 2020-10-16 16:30:57 -05:00
iarspider
e9da8d1633 Add external package support to bzip2 (#19343) 
* Add external package support to bzip2

* Flake-8

* Flake-8 part 2

Co-authored-by: iarspider <iarpsider@gmail.com>
 2020-10-16 16:28:31 -05:00
Scott McMillan
a612be1c98 New compiler: nvhpc (NVIDIA HPC SDK) (#19294) 
* Add nvhpc compiler definition: "spack compiler add" will now look
  for instances of the NVIDIA HPC SDK compiler executables
  (nvc, nvc++, nvfortran) in supplied paths
* Add the nvhpc package which installs the nvhpc compiler
* Add testing for nvhpc detection and C++-standard/pic flags

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2020-10-16 14:04:27 -07:00
iarspider
78f349c635 ghostscript: add external package detection (#19346) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-10-16 20:13:39 +02:00
Pieter Ghysels
f0b1f93d12 Fix for MKL ScaLAPACK (#19336) 2020-10-16 11:08:38 -05:00
darmac
01cf1d79db parquet-format: added new package at v2.8.0 (#18544) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-10-16 17:54:42 +02:00
manifest
506d2795a8 py-inheritance: added new package at v0.1.5 (#19337) 2020-10-16 17:07:23 +02:00
iarspider
8c7385096e spack external find: fix debug output (#19342) 
Output was, e.g. `Executables in /bin and /,u,s,r,/,b,i,n are both associated with the same spec xz@5.2.2`, will be `Executables in /bin and /usr/bin are both associated with the same spec xz@5.2.2`.
 2020-10-16 16:46:41 +02:00
iarspider
d34b612052 diffutils: added support for external detection (#19344) 2020-10-16 16:10:07 +02:00
t-nojiri
4b9701a195 opium : convert to be an autotools package (#18708) 2020-10-16 12:08:59 +02:00
Toyohisa Kameyama
a481087695 autotools: recursively patch config.guess and config.sub (#18347) 
Previously config.guess and config.sub were patched only
in the root of the source path. 

This modification extend the previous behavior to patch every
config.guess or config.sub file even in subfolders, if need be.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-10-16 11:30:06 +02:00
dunatotatos
cdeecf2507 GenomeWorks: added new package at v0.5.3 (#19263) 2020-10-16 10:17:32 +02:00
Harsh Bhatia
878e89ecea faiss: added new package at v1.6.3 (#17290) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-10-16 09:47:22 +02:00
Greg Becker
7a6268593c Environments: specify packages for developer builds (#15256) 
* allow environments to specify dev-build packages

* spack develop and spack undevelop commands

* never pull dev-build packges from bincache

* reinstall dev_specs when code has changed; reinstall dependents too

* preserve dev info paths and versions in concretization as special variant

* move install overwrite transaction into installer

* move dev-build argument handling to package.do_install

now that specs are dev-aware, package.do_install can add
necessary args (keep_stage=True, use_cache=False) to dev
builds. This simplifies driving logic in cmd and env._install

* allow 'any' as wildcard for variants

* spec: allow anonymous dependencies

raise an error when constraining by or normalizing an anonymous dep
refactor concretize_develop to remove dev_build variant
refactor tests to check for ^dev_path=any instead of +dev_build

* fix variant class hierarchy
 2020-10-15 17:23:16 -07:00
Omar Padron
2ed39dfd8e make opengl and spectrum-mpi set has_code = False (#19133) 
* make opengl and spectrum-mpi set has_code = False
 2020-10-15 15:13:21 -04:00
Sreenivasa Murthy Kolam
0b6f995187 Update migraphx for rocm 3.8 (#19300) 
* update to migraphx for rocm_3.7.0 and rocm_3.8.0

* fix flake8 errors

* address review comments

* review changes

* removed the msgpack,mentioned twice
 2020-10-15 10:41:48 -05:00
darmac
9240058c0d Add new package: bdii (#18732) 
* Add new package: bdii

* bdii: refine dependents
 2020-10-15 16:47:06 +02:00
darmac
a9d25ea01b py-acme-tiny: added new package at v4.0.4 (#18808) 2020-10-15 16:14:13 +02:00
Jean-Paul Pelteret
c1f2d6a73b GiNaC: added new package at v1.7.11, updated cln (#15730) 2020-10-15 16:03:12 +02:00
Tom Payerle
d034d622c0 papi: restrict +sde to @6.0.0: (#19290) 
Software defined events (SDE) appear to have been introduced only in
@6.0.0 (see e.g. http://icl.utk.edu/papi/software/view.html?id=275)
See #19289
 2020-10-15 15:44:10 +02:00
Tom Payerle
9a554769a3 pexsi: add openmp flags to fortran flags if dependencies use OpenMP (#19274) 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-10-15 15:41:58 +02:00
Cody Balos
a9dfa89c89 xbraid: added v2.3.0 and v3.0.0 (#19280) 2020-10-15 15:38:05 +02:00
Adam J. Stewart
d1423e21fb CMake: added v3.18.3 and v3.18.4 (#19302) 2020-10-15 15:28:09 +02:00
manifest
4b9bdea26b blasr-libcpp: improved setup_run_environment (#18038) 
Added non standard paths to LD_LIBRARY_PATH
 2020-10-15 15:26:39 +02:00
Thomas Gruber
f45e8ac70b LIKWID: added v5.0.2, new depends_on clauses and a patch for Lua (#19164) 2020-10-15 15:20:04 +02:00
G-Ragghianti
1bf87447ad Blaspp: added v2020.10.0, v2020.09.0, reworked recipe (#19311) 2020-10-15 14:58:31 +02:00
Hadrien G
298e18dbf3 acts: added v1.02.0 (#19305) 2020-10-15 14:13:55 +02:00
Axel Huebl
d1bfc426b0 Py-Pillow: added v8.0.0 (#19320) 2020-10-15 14:13:04 +02:00
Erik Schnetter
e4c1cb380b amrex: Add CUDA variant (#19306) 
* amrex: Add CUDA variant

* amrex: require at least cuda 9
 2020-10-14 21:24:20 -05:00
Jean-Paul Pelteret
50c7bc8cfd deal.II: Fix broken include and library path concatenation (#19315) 2020-10-14 21:23:55 -05:00
Nichols A. Romero
71d2ce7403 Removing f18 package. (#19307) 2020-10-14 13:44:22 -05:00
Tomoki, Karatsu
72f431b67b autotools.py: fix the list of objects to be removed from libtool (Fujitsu). (#19303) 2020-10-14 19:01:49 +02:00
vvolkl
a9bc5f7751 [delphes] new version, new env var (#19304) 2020-10-14 11:55:44 -05:00
Tomoki, Karatsu
48b14c4ac6 uqtk: Add version and fixes for Fujitsu compiler. (#19288) 
* uqtk: Add version and fixes for Fujitsu compiler.

* Fixed order of versions.

* Add condition to execute function.
 2020-10-14 11:44:27 -05:00
Nichols A. Romero
2651fab8d1 Flang NVidia offload fix (#18965) 
* Make release_90 preferred version.

* Be more explicity about CUDA dependencies.

* Remove duplicate CUDA dependency in Flang package and introduce nvptx variant.

* Fix nvptx variant message.
 2020-10-14 11:35:25 -05:00
Chuck Atkins
383b5b70cc adios2: Remove rogue zmq dependency for ssc engine (#19293) 2020-10-14 00:47:15 -07:00
Edoardo Aprà
c60cbab215 new release 7.0.2 (#19297) 2020-10-13 23:06:21 -05:00
Justin S
721efc62d1 busco: add 4.1.3 (#19296) 2020-10-13 23:05:43 -05:00
David M. Rogers
beeab6e1b9 Make DEAL_II_MPI_WITH_CUDA_SUPPORT conditional on mpi package option. (#19279) 2020-10-13 13:23:04 -05:00