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Author SHA1 Message Date
Bryce Allen
6887cb3da4 pfunit: add max_array_rank=(int) variant (#15348) 
* pfunit: add max_array_rank=(int) variant

* pfunit: flake8 line length fixes
 2020-03-12 10:58:18 -06:00
Zhiyi Wu
d95766756c Update plumed 2.5.4 and 2.6.0 (#15462) 
Co-authored-by: zhiyiwu <zhiyi.wu@gtc.ox.ac.uk>
 2020-03-12 10:47:26 -06:00
Thomas Gruber
e916a9424c likwid: add compiler selection for ARM and POWER architecture (#14183) 
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2020-03-12 14:44:43 +01:00
Jeffrey Salmond
ad1a28ee48 plumed: add cython as dependency (#15460) 2020-03-12 12:01:52 +01:00
Massimiliano Culpo
59b6822a47 Creating versions from urls doesn't modify class attributes (#15452) 
fixes #15449

Before this PR a call to pkg.url_for_version was modifying
class attributes determining different results for subsequents
calls and an error when the urls was empty.
 2020-03-12 09:21:19 +01:00
Massimiliano Culpo
a22d52a67d Minor updates to CI configuration (#15458) 
* Check on Python versions uses action/checkout@v2
* Update the apt cache before installing system packages
 2020-03-12 08:19:42 +01:00
darmac
f4a5eb2b6d add new package: lmbench (#15457) 
* add new package: lmbench

* refine LDFLAGS append call
 2020-03-11 22:49:22 -05:00
Nick Booher
8bdbd96e68 revbayes: Update URLs and hashes for old archives (#15451) 
* revbayes: Update URLs and hashes for old archives

* Switch to url_for_version

* Fix whitespace
 2020-03-11 22:04:59 -05:00
Les Kurz
99e465663a Update package.py for HDF5 1.12.0 release (#15430) 
* Update package.py

* Update package.py

* add upper bounds to production config_option

* fix config_options

* Fix mistaken changes.
 2020-03-11 20:08:49 -05:00
darmac
77434c24a8 add new package: php (#15435) 2020-03-11 19:36:23 -05:00
Daryl W. Grunau
3e8f873b03 cpio: icc -no-gcc (#15446) 
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2020-03-11 19:35:10 -05:00
Michael Kuhn
e01817cb15 binutils: Add missing texinfo dependency (#15444) 2020-03-11 19:34:24 -05:00
darmac
a9a59ea3b4 add new package: keyutils (#15433) 2020-03-11 19:29:31 -05:00
Stephanie Brink
6af8e19b2d add hatchet python package (#15428) 2020-03-11 19:23:32 -05:00
Dr. Christian Tacke
12940f3448 libfabric@1.9.1: Add fabtests (#15440) 
The test utils for the new version 1.9.1 are missing.
Add them.
 2020-03-11 14:51:35 -05:00
Anthony Scemama
83584afa35 Package for the resultsFile Python module (#15088) 
* Added resultsFile package

* Added comments

* Fixed PEP8

* Added Python3 package

* Removed py-setuptools
 2020-03-11 14:44:36 -05:00
rvinaybharadwaj
87e69eed1c Horovod (#15380) 2020-03-11 12:00:02 -06:00
Tamara Dahlgren
20c77cade5 bugfix: resolve undefined source_pkg_dir failure (#15339) 2020-03-11 11:39:23 +01:00
Greg Becker
299fa6b5ca fetch_strategy: remove vestigial code (#15431) 2020-03-11 11:24:38 +01:00
Neil Flood
9b114c486f kealib: moved to github, added v1.4.12 (#15436) 2020-03-11 11:06:18 +01:00
Hector
6d8cd446c5 Add valgrind variant to petsc (#15427) 
* Add PETSc valgrind dependency

* Remove +debug on valgrind dependency

* enh variant description
 2020-03-10 20:41:00 -05:00
Seth R. Johnson
8ac06ece3d Fix OpenBLAS 0.2 build, 0.38+ Intel builds, and variant name (#15419) 
* Remove ARCH argument in OpenBLAS < 0.3.0

* Fix Intel OpenBLAS that uses lapack 0.3.9

* Improve variant name consistency

see https://github.com/spack/spack/issues/15239
 2020-03-10 16:40:03 -05:00
Mathias Anselmann
fc78456547 gcc: backporting fix for glibc 2.31 (#15403) 
* backporting fix for building gcc >= 8.1.0 and gcc <= 9.2.0 with binutils 2.31

* removed trailing whitespace
 2020-03-10 16:27:07 -05:00
Nisarg Patel
4ef0442a01 fix static mumps build error - Added a space at the end of ar vr for the static build to run successfully (#15407) 2020-03-10 16:23:41 -05:00
Toyohisa Kameyama
94b686e32b libxpresent: Add some dependencies. (#15417) 
* libxpresent: Add some dependencies.

* Change *proto dependency type from build to link.
 2020-03-10 16:22:24 -05:00
Toyohisa Kameyama
9fba110372 libxpresent: Add some dependencies. (#15417) 
* libxpresent: Add some dependencies.

* Change *proto dependency type from build to link.
 2020-03-10 16:22:04 -05:00
Tomoki, Karatsu
03c684954e r: Lower optimization level when using Fujitsu compiler@4.1.0. (#15418) 2020-03-10 16:21:14 -05:00
Dr. Christian Tacke
6993a82cb4 cryptsetup: Add pkgconfig dependency (#15422) 2020-03-10 16:18:59 -05:00
Elsa Gonsiorowski, PhD
9debb7e1b6 SCR: build with components (#14931) 
* scr: add develop, legacy branches; version 2.0.0

squash! scr: add develop and legacy versions

* filo: package for SCR component

* spath: package for SCR component

* axl: update for versions 0.3 and 0.2

* scr: build with components

* spath: structure of +mpi if/else

* 👌 capitalization of ecp-veloc

* scr: branches are always greater than any version
 2020-03-10 15:27:41 -05:00
broderickpt
c4c6accace contrib-spiral: submit SPIRAL package recipe and HCOL package recipe … (#15188) 
* contrib-spiral: submit SPIRAL package recipe and HCOL package recipe (extension package for SPIRAL) to spack

* contrib-spiral: fix flake8 complaints for spiral & hcol

* contrib-spiral: Revisions to package recipes to address comments

* contrib-spiral: remove unecessary 'test' function

* contrib-spiral: update hcol package to install in <prefix>/namespaces/packages/hcol

* contrib-spiral: don't import os to hcol

* contrib-spiral: tweak hcol package recipe
 2020-03-10 13:07:53 -05:00
Greg Becker
bbbee6700b bugfix: fix install_missing_compilers option bug from v0.14.0 (#15416) 
* bugfix: ensure bootstrapped compilers built before packages using the compiler
 2020-03-10 10:35:20 -07:00
Christoph Junghans
577860761b decompressor: add support for bz2 (#15424) 2020-03-10 10:46:45 -06:00
Sergey Kosukhin
7118e24664 Parallel-netcdf: update package. (#15359) 
* Parallel-netcdf: update package.

* Add a temporary patch for version 'develop'.

* Rename version 'develop' to 'master'.

* Drop the patch for 'master'.
 2020-03-10 11:29:57 -05:00
Seth R. Johnson
21634e805e libfabric: added v1.9.1 (#15405) 2020-03-10 17:09:46 +01:00
Christoph Junghans
7744070787 gromacs: remove simd variants (#13636) 2020-03-10 09:08:10 -06:00
TZ
48f8f0ec58 likwid: added v5.0.1 (#15421) 
includes fixes for likwid-mpirun, better support for ARM and POWER, 
other bugfixes.

For full support of ARM and POWER, #14183 has to be merged, too.

Added TomTheBear as maintainer. He is the current main developer of
LIKWID.
 2020-03-10 16:03:14 +01:00
Melven Roehrig-Zoellner
ebe7590310 bazel: add missing dependency on zip (#15402) 2020-03-10 10:18:29 +01:00
Mathias Anselmann
da677b3cb8 update binutils to 2.34 (#15401) 2020-03-10 10:15:31 +01:00
Justin S
b86aa4ec18 eagle: new package at v1.1.2 (#15409) 2020-03-10 10:05:34 +01:00
Tim Haines
65b131f373 Ignore Eclipse files and folders (#15413) 2020-03-10 09:58:40 +01:00
Howard Pritchard
f87dfb9828 openmpi: add version 4.0.3 (#15414) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2020-03-10 09:01:02 +01:00
Patrick Gartung
c7dda38826 Revert to gzip as the default buildcache compression as bzip2 is not always available. (#15412) 
* Revert to gzip as the default buildcache compression as bzip2 is not always available.

* Flake8
 2020-03-09 16:46:54 -05:00
ktsai7
fd69994c68 added cmake_args (#15411) 2020-03-09 14:07:11 -06:00
TZ
3f69cc9ec8 Gromacs: new version 2020.1 (#15399) 2020-03-09 11:35:54 -06:00
Toyohisa Kameyama
c919a7e302 exiv2: add zlib and expat dependency. (#15396) 2020-03-09 10:31:20 +01:00
Toyohisa Kameyama
c783493ace fast-global-file-status: add openssl dependency. (#15398) 2020-03-09 10:29:02 +01:00
Stephen McDowell
2beefc6bfe eigen variants have been removed (#15392) 
* eigen variants have been removed

ref: https://github.com/spack/spack/pull/15357

* opencv ^eigen is ('build', 'run') dependency
 2020-03-09 09:35:31 +01:00
Todd Gamblin
49ec260a9a bugfix: installer.py shouldn't be executable (#15386) 
This is a minor permission fix on the new installer.py introduced in #13100.
 2020-03-07 23:48:18 -08:00
Adam J. Stewart
6f8d1b41d0 gnupg: add 2.2.19, add missing pinentry dep (#15390) 2020-03-07 17:00:14 -06:00
Adam J. Stewart
cd4530ca1f libgcrypt: fix macOS tests (#15389) 2020-03-07 16:43:38 -06:00