Todd Gamblin
a0b925dae3
codecov: increase project threshold to 2% ( #46828 )
...
We run tests for more python versions on `develop` than we do for PRs, so codecov
project status is nearly always failing. There is about a 1% difference in max coverage
between `develop` tests and PR tests, so we should increase the project threshold to 2%
to allow for this difference.
The purpose of the project test on PRs is just to make sure that nothing done on the PR
massively affects coverage of code not covered by the PR. This is valuable, but rare. It
only really affects PRs that deal with test or coverage configuration.
- [x] change project coverage threshold from .2% to 2%
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-07 08:24:22 +02:00
ĐARK々MÁTTER
c99518709a
Add v3.0.0 version for libfirefly package ( #46801 )
...
* Add v3.0.0 version for libfirefly package
* [@spackbot] updating style on behalf of tbhaxor
---------
Co-authored-by: tbhaxor <tbhaxor@users.noreply.github.com>
2024-10-06 19:00:49 -07:00
Wouter Deconinck
d67b5b300c
root: add v6.32.06 ( #46804 )
2024-10-06 14:18:15 -07:00
Wouter Deconinck
9bcca28afd
gdbm: add v1.24 ( #46808 )
2024-10-06 17:05:05 +02:00
Adam J. Stewart
b07d1e0194
Remove -ld_classic from all packages ( #46608 )
2024-10-05 23:16:16 +02:00
Wouter Deconinck
7ad08213dc
py-krb5: add v0.7.0 ( #46799 )
...
* py-krb5: add v0.7.0
* [@spackbot] updating style on behalf of wdconinc
---------
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-10-05 21:24:26 +02:00
dependabot[bot]
dce3cf6f31
build(deps): bump docker/setup-buildx-action from 3.7.0 to 3.7.1 ( #46796 )
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Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action ) from 3.7.0 to 3.7.1.
- [Release notes](https://github.com/docker/setup-buildx-action/releases )
- [Commits](8026d2bc36...c47758b77c
2024-10-05 10:35:12 -05:00
Todd Gamblin
d763d6f738
gc: restrict to specific specs (#46790 )
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`spack gc` has so far been a global or environment-specific thing.
This adds the ability to restrict garbage collection to specific specs,
e.g. if you *just* want to get rid of all your unused python installations,
you could write:
```console
spack gc python
```
- [x] add `constraint` arg to `spack gc`
- [x] add a simple test
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-04 17:43:10 -07:00
Matt Thompson
d87464e995
mapl: add 2.49.0 ( #46787 )
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* mapl: add 2.49.0
* Remove unneeded depends_on
2024-10-04 15:54:56 -07:00
Wouter Deconinck
280fd1cd68
py-rpds-py: add v0.18.1 ( #46786 )
2024-10-04 15:37:45 -06:00
Wouter Deconinck
bfbd0a4d4c
py-cookiecutter: add v2.6.0 (fix CVE) ( #46762 )
...
* py-cookiecutter: add v2.6.0
* py-poyo: add v0.5.0
* py-poyo: fix style
2024-10-04 22:34:48 +02:00
Satish Balay
be21b0b3bf
hdf5: use spack installed zlib ( #46612 )
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Avoid that hdf5 searches all search paths for ZLIB.cmake config files (inluding /usr/lib), before it looks for zlib without cmake config files, which is how Spack installs it
2024-10-04 22:55:46 +03:00
Wouter Deconinck
8f798c01ec
freetype: add v2.13.3 ( #46751 )
2024-10-04 13:28:22 -06:00
Axel Huebl
853a7b2567
WarpX: 24.10 ( #46763 )
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* WarpX: 24.10
This updates WarpX and dependencies for the 24.10 release.
New features:
- EB runtime control: we can now compile with EB on by default,
because it is not an incompatible binary option anymore
- Catalyst2 support: AMReX/WarpX 24.09+ support Catalyst2 through
the existing Conduit bindings
* Fix Typo in Variant
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* Improve Python Dep Version Ranges
* Add Missing `-DWarpX_CATALYST`
* AMReX: Missing CMake Options for Vis
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-04 11:54:42 -07:00
Massimiliano Culpo
1756aeb45a
re2c: rework package to use multiple build systems ( #46748 )
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Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-10-04 20:48:58 +03:00
Alberto Sartori
7a9a634c94
justbuild: add version 1.3.2 ( #46777 )
2024-10-04 10:25:30 -07:00
downloadico
4caf718626
abinit: fixed "if" statement bug ( #46785 )
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fixed "if" statement when selecting the linear algebra flavor.
2024-10-04 10:24:06 -07:00
Manuela Kuhn
5867d90ccf
py-rsatoolbox: add v0.2.0 ( #46780 )
2024-10-04 19:01:15 +02:00
Adrien Bernede
8a9bfd162d
raja-perf: Fix support for SYCL ( #46782 )
2024-10-04 17:49:01 +02:00
Mikael Simberg
7bc1316ce4
mold: add 2.34.1 ( #46783 )
2024-10-04 09:45:36 -06:00
Manuela Kuhn
c9d312e9c1
laynii: add new package ( #46781 )
2024-10-04 17:42:26 +02:00
Manuela Kuhn
792b576224
py-glmsingle: Add v1.2 ( #46776 )
2024-10-04 17:40:40 +02:00
Mikael Simberg
5c66f6b994
pika: add 0.29.0 ( #46778 )
2024-10-04 09:26:57 -06:00
Harmen Stoppels
f17e76e9d8
clingo: fix build with Python 3.13+ ( #46775 )
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Python 3.9 deprecated `PyEval_InitThreads` and kept it as a no-op, and
Python 3.13 deleted the function.
The patch removes calls to it.
2024-10-04 13:26:15 +02:00
Massimiliano Culpo
905e7b9b45
Separate bootstrapping tests for Windows from other platforms ( #46750 )
...
This allows us to keep the workflow file tidier, and avoid
using indirections to perform platform specific operations.
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-10-04 10:35:07 +02:00
Mikael Simberg
ad294bc19f
umpire: re-instate lost depend on camp ~rocm when umpire itself has ~rocm ( #46747 )
2024-10-04 01:59:28 -06:00
Satish Balay
8dd978ddb9
py-mpi4py: add v4.0.0 ( #46652 )
...
* py-mpi4py: add v4.0.0
* sensei: update mpi4py dependency
build with py-mpi4py@4.0.0 due to fatal no such file or directory error
* petsc4py: update license, and remove C++/Fortran dependency
2024-10-04 00:42:07 -06:00
Vicente Bolea
b0c48b66c2
paraview: add new v5.13.1 release ( #46695 )
2024-10-04 00:30:03 -06:00
dependabot[bot]
96880e0b65
build(deps): bump docker/setup-buildx-action from 3.6.1 to 3.7.0 ( #46768 )
...
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action ) from 3.6.1 to 3.7.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases )
- [Commits](988b5a0280...8026d2bc36
2024-10-04 07:26:49 +02:00
Wouter Deconinck
48de9d48e2
armadillo: add v12.8.4, v14.0.2 ( #46761 )
...
* armadillo: add v12.8.4, v14.0.2
* armadillo: fix git
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03 19:51:09 -06:00
Teague Sterling
72581ded8f
duckdb: add v1.1.1, remove 0.7.1->0.8.1, update variants ( #46743 )
...
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-10-03 19:02:51 -06:00
Harmen Stoppels
8c4ff56d9f
update CHANGELOG.md ( #46758 )
2024-10-03 18:01:46 -07:00
Satish Balay
d2a551c047
hiop: add v1.1.0 ( #46764 )
2024-10-03 18:32:40 -06:00
Adam J. Stewart
9dfe096d3a
py-keras: add v3.6 ( #46767 )
2024-10-03 18:20:22 -06:00
Teague Sterling
62f5b18491
at-spi2-core: add v2.52.0,2.54.0 ( #46769 )
...
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-10-03 17:15:56 -07:00
Wouter Deconinck
8f5af6eb7a
doxygen: add v1.12.0 ( #46752 )
2024-10-03 19:59:35 -04:00
Wouter Deconinck
d3a0904790
catch2: add v3.7.1 ( #46759 )
2024-10-03 17:44:18 -06:00
Todd Gamblin
3c2a682876
Better docs and typing for _setup_pkg_and_run ( #46709 )
...
There was a bit of mystery surrounding the arguments for `_setup_pkg_and_run`. It passes
two file descriptors for handling the `gmake`'s job server in child processes, but they are
unsed in the method.
It turns out that there are good reasons to do this -- depending on the multiprocessing
backend, these file descriptors may be closed in the child if they're not passed
directly to it.
- [x] Document all args to `_setup_pkg_and_run`.
- [x] Document all arguments to `_setup_pkg_and_run`.
- [x] Add type hints for `_setup_pkg_and_run`.
- [x] Refactor exception handling in `_setup_pkg_and_run` so it's easier to add type
hints. `exc_info()` was problematic because it *can* return `None` (just not
in the context where it's used). `mypy` was too dumb to notice this.
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-03 14:36:53 -07:00
Niklas Bölter
a52ec2a9cc
Update some package homepage URLS ( #46683 )
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Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03 15:00:53 -06:00
Alec Scott
43a9c6cb66
gh: add v2.58.0, drop GoBuilder ( #46720 )
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* gh: drop GoBuilder now that GoPackage supports legacy attributes
* gh: add v2.58.0
2024-10-03 09:00:57 -07:00
m-shunji
4cace0cb62
libxsmm: fix for aarch64 environment ( #42312 )
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Co-authored-by: inada-yoshie <inada.yoshie@fujitsu.com>
2024-10-03 07:30:06 -06:00
kwryankrattiger
482e2fbde8
Noop jobs should do less work ( #46732 )
2024-10-03 11:59:27 +00:00
Ashim Mahara
ad75e8fc95
py-igv-notebook: new package ( #46723 )
2024-10-03 05:44:16 -06:00
Wouter Deconinck
af43f6be0d
apptainer: add v1.3.4 ( #46730 )
2024-10-03 05:36:33 -06:00
AcriusWinter
76243bfcd7
Stand-alone testing: remove deprecated methods ( #45752 )
...
* Stand-alone testing: remove deprecated methods
* audit: replace deprecated test method checks for test callbacks (AcriusWinter)
* install_test: replace deprecated with new test method name starts (AcriusWinter)
* package_base: removed deprecated test methods (AcriusWinter)
* test/package_class: remove deprecated test methods (AcriusWinter)
* test/reporters: remove deprecated test methods (AcriusWinter)
* reporters/extract: remove deprecated test-related methods (AcriusWinter)
* py-test-callback: rename test in callbacks and output (AcriusWinter)
* reporters/extract: remove deprecated expected failure output capture (AcriusWinter)
* stand-alone test cleanup: f-string, remove deprecation warning, etc. (AcriusWinter)
* stand-alone tests: f-string fix and remove unused imports (AcriusWinter)
* package_base: finish removing the rest of deprecated run_test method (AcriusWinter)
* py-test-callback: remove stand-alone test method (AcriusWinter)
* package_base: remove now unused imports (AcriusWinter)
* Python: test_imports replaces test (tldahlgren)
* mptensor, trivial-smoke-test: replace deprecated cache_extra_test_sources method (tldahlgren)
* trivial-smoke-test: replace deprecated install_test_root method (tldahlgren)
* docs: update perl and scons package's test methods (tldahlgren)
* builder: remove deprecated test() method (tldahlgren)
* Update legion and mfem test data for stand-alone tests (tldahlgren)
* py-test-callback: restore the test method
* Audit/stand-alone testing: Fix and added stand-alone test audit checks
- fix audit failure message for build-time test callback check
- remove empty test method check during stand-alone testing
- change build-time test callback check to package_properties
- add test method docstring audit check and mock fail-test-audit-docstring pkg
- add test method implementation audit check and mock fail-test-audit-impl pkg
- add new mock packages to test_package_audits and test_test_list_all
* audits: loosen docstring content constraints
* Add missing test method docstring
* py-test-callback: resolve builder issues
* Audits: Add checks for use of deprecated stand-alone test methods; improve output for other test-related checks
* Fix style issues
* test_test_list_all: add new fail-test-audit-deprecated package
---------
Signed-off-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03 11:36:18 +00:00
Adam J. Stewart
feabcb884a
py-torchaudio: add support for CUDA 12.5+ ( #46746 )
2024-10-03 13:16:40 +02:00
Daniel Beltrán
1c065f2da9
ambertools: new package ( #42684 )
...
* new builtin package: ambertools
* fixes for the style test
* yet more changes for the style test
* hope this is the last fix for the style test
* netlib-xblas is a dependency, it needs a depends_on("m4", type="build")
* ambertools: Add new setuptool dependency, limit python to <= 3.10 (does not build with 3.11+)
---------
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-10-03 05:13:46 -06:00
Teague Sterling
401e7b4477
vep: new package ( #44522 )
...
* Adding the perl-bio-db-bigfile package
* Adding perl-bio-ensembl package
* Adding perl-bio-ensembl-variation package
* Adding the perl-bio-ensembl-funcgen package
* Adding perl-bio-ensembl-io package
* Fixing checksums
* py-uvloop: add v3.8.14, v3.9.15, v3.10.3 and dependencies
* rollback
* Update package.py
* Update package.py
* vep: add v110,v111,v112
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Update package.py
* Updating dependent package handling
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Updating dependent package handling
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Update package.py
* Update package.py
* Reverting variants
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Update package.py
* Update package.py
* Rename package.py to package.py
* Update package.py
* Update package.py
* Update package.py
* Fix variant installation and dependencies
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Styles
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
* Removing unneeded dependencies
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
---------
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2024-10-03 11:07:54 +01:00
Mikael Simberg
1b0020f3ee
pika: remove git dependency ( #46745 )
2024-10-03 03:01:45 -06:00
Mark W. Krentel
d21577803f
hpcviewer: add version 2024.09 ( #46744 )
2024-10-03 09:58:40 +02:00
