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Author SHA1 Message Date
Harmen Stoppels
a16ee3348b Do not cache indices in Gitlab (#44029) 2024-05-06 15:54:21 +02:00
Massimiliano Culpo
d654d6b1f4 Remove Fedora 37 and 38, Ubuntu 18 from CI (#44006) 2024-05-06 15:51:45 +02:00
Harmen Stoppels
9b4ca0be40 clingo bootstrap: remove 3.12 patch and concretizer workarounds (#44028) 2024-05-06 15:00:41 +02:00
Harmen Stoppels
dc71dcfdc2 bootstrap: lazy bootstrapping of clingo and GnuPG (#44026) 
Currently bootstrapping from source fails because clingo requires gnupg
requires clingo.

This commit stops eager bootstrapping. We don't need `patchelf` nor `gnupg`
generally. They're bootstrapped when needed.
 2024-05-06 14:02:39 +02:00
Greg Becker
1f31c3374c External package detection for compilers (#43464) 
This creates shared infrastructure for compiler packages to implement the 
detailed search capabilities from the `spack compiler find` command for the 
`spack external find` command.

After this commit, `spack compiler find` can be replaced with 
`spack external find --tag compiler`, with the exception of mixed toolchains.
 2024-05-06 10:33:33 +02:00
Massimiliano Culpo
27aeb6e293 Update vendored archspec to v0.2.4 (#44005) 2024-05-06 10:20:56 +02:00
Harmen Stoppels
715214c1a1 spack env create <env>: dir if dir-like (#44024) 
A named env cannot contain `.` and `/`.

So when a user runs `spack env create ./here` do not error but treat it
as `spack env create -d ./here`.

Also fix help string of `spack env create`, which seems to have been
copied from `activate` incorrectly.
 2024-05-06 02:00:23 -06:00
dependabot[bot]
b471d62dbd build(deps): bump black from 24.4.0 to 24.4.2 in /lib/spack/docs (#43878) 
Bumps [black](https://github.com/psf/black) from 24.4.0 to 24.4.2.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.0...24.4.2)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-06 09:55:43 +02:00
Massimiliano Culpo
a5f62889ca archspec: add v0.2.4 (#44022) 2024-05-06 09:51:01 +02:00
Alec Scott
2a942d98e3 pkgconf: add v2.2.0 (#44008) 2024-05-06 09:31:41 +02:00
Alec Scott
4a4077d4ef rust: add v1.78.0 (#44012) 2024-05-06 09:30:34 +02:00
Alec Scott
c0fcccc232 go: add v1.22.2 (#44013) 2024-05-06 09:30:13 +02:00
Alec Scott
0b2cbfefce ncurses: add v6.5 (#44015) 2024-05-06 09:30:00 +02:00
Massimiliano Culpo
c499514322 libgpg-error: add v1.49 (#44023) 2024-05-06 09:28:31 +02:00
Alec Scott
ae392b5935 pcre2: add v10.43 (#44020) 2024-05-06 09:25:11 +02:00
Alec Scott
62e9bb5d51 libunistring: add v1.2 (#44018) 2024-05-06 09:24:12 +02:00
Alec Scott
6cd948184e libidn2: add v2.3.7 (#44017) 2024-05-06 09:23:50 +02:00
Alec Scott
44ff24f558 openssl: v3.3.0 (#44019) 2024-05-06 09:22:15 +02:00
Alec Scott
c657dfb768 gettext: v0.22.5 (#44014) 2024-05-05 06:57:42 -06:00
Pranav Sivaraman
f2e410d95a lazygit: add v0.41.0 (#43903) 2024-05-04 17:18:30 -06:00
dependabot[bot]
df443a38d6 build(deps): bump actions/checkout from 4.1.2 to 4.1.4 (#43831) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.2 to 4.1.4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](9bb56186c3...0ad4b8fada)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-04 15:49:26 -07:00
dependabot[bot]
74fe498cb8 build(deps): bump mypy from 1.9.0 to 1.10.0 in /lib/spack/docs (#43834) 
Bumps [mypy](https://github.com/python/mypy) from 1.9.0 to 1.10.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/1.9.0...v1.10.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-04 15:48:49 -07:00
Carlos Bederián
5f13a48bf2 mesa: add 23.3.6 (#43736) 2024-05-04 15:46:39 -07:00
Jon Rood
c4824f7fd2 ccls: add new versions (#43923) 2024-05-04 15:42:07 -07:00
dependabot[bot]
49a8634584 build(deps): bump codecov/codecov-action from 4.3.0 to 4.3.1 (#43945) 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.3.0 to 4.3.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](84508663e9...5ecb98a3c6)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-04 15:39:42 -07:00
Seth Bromberger
eac5ea869f tmux: add v3.4 and missing yacc build dep (#43975) 2024-05-04 22:33:19 +02:00
Juan Miguel Carceller
f5946c4621 pythia8: Add a gzip variant and filter some compiler wrapper paths (#43807) 
* Add a gzip variant and filter some compiler wrapper paths

* Apply suggestions from code review

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-05-04 09:33:44 -05:00
Harmen Stoppels
8564ab19c3 fix iconv from libc (#43996) 
* fix iconv from libc

* fix args in glib
develop-2024-05-05 		2024-05-04 10:30:43 +02:00
Scott Wittenburg
aae7a22d39 gitlab: release branch pipelines rebuild what changed (#43990) 2024-05-04 10:11:48 +02:00
eugeneswalker
09cea230b4 e4s-alc: add v1.0.2 (#44001) 2024-05-03 22:24:08 -06:00
wspear
a1f34ec58b Add a gmake dependency for TAU (#43870) 
We discovered a case where the system gmake can get confused by spack's build environment. Let's use a spack-provided gmake for consistent builds.
 2024-05-03 20:15:40 -07:00
Auriane R
4d7cd4c0bf Add py-flash-attn@2.4.2 (#43960) 2024-05-03 16:40:46 -07:00
Christopher Christofi
4adbfa3835 fix package permissions docs link for gaussian packages (#43998) 2024-05-03 17:35:39 -06:00
Adam J. Stewart
8a1b69c1d3 Modernize py-torch-geometric and dependencies (#43984) 
* Modernize py-torch-geometric and dependencies
* Forgot one maintainer
 2024-05-03 16:21:41 -07:00
Matthew Thompson
a1d69f8661 hdf package: fix building with apple-clang@15: (#43964) 2024-05-03 16:11:55 -07:00
Carlos Bederián
e05dbc529e globalarrays package: add missing dependencies for armci=ofi/openib (#43971) 2024-05-03 16:08:29 -07:00
jdomke
99d33bf1f2 hpl: linking against fujitsu ssl2 if available (#43978) 
* linking against fujitsu ssl2 if available

---------

Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
 2024-05-03 16:08:12 -07:00
jdomke
bd1918cd71 adding clang compiler checks which behaves exactly like aocc (#43976) 
Co-authored-by: domke <673751-domke@users.noreply.gitlab.com>
 2024-05-03 16:01:14 -07:00
snehring
2a967c7df4 graphicsmagick package: add version 1.3.43 (#43977) 2024-05-03 15:59:10 -07:00
downloadico
7596aac958 New package: py-pylith (#43987) 2024-05-03 15:56:21 -07:00
Frédéric Simonis
c73ded8ed6 preCICE: increase baseline versions for next ver (#43985) 2024-05-03 15:55:46 -07:00
Satish Balay
df1d783035 sowing: add @master (#43991) 2024-05-03 15:37:39 -07:00
Massimiliano Culpo
47051c3690 Add a default provider for armci (#43997) 2024-05-03 23:48:58 +02:00
Owen Solberg
3fd83c637d Add checksum for R v4.4.0 (#43973) 
Co-authored-by: Owen Solberg <owen.solberg@sana.com>
 2024-05-03 14:47:53 -07:00
Jon Rood
ef5afb66da openfast: updates to package (#43994) 2024-05-03 15:22:12 -06:00
snehring
ecc4336bf9 r-asreml: adding new package (#43970) 
Signed-off-by: Shane Nehring <snehring@iastate.edu>
 2024-05-03 12:20:58 -07:00
Harmen Stoppels
d2ed217796 concretizer args: --fresh-roots == --reuse-deps (#43988) 
Since reuse is the default now, `--reuse-deps` can be confusing, as it
technically does not imply roots are fresh.

So add `--fresh-roots`, which is also easier to discover when running
`spack concretize --fre<tab>`
 2024-05-03 12:12:36 -07:00
Dom Heinzeller
272c7c069a Add -fPIC to hdf-eos2 builds (#43794) 
* Add -fPIC to hdf-eos2 builds
* Use self.compiler.cc_pic_flag instead of -fPIC
* Fix style in var/spack/repos/builtin/packages/hdf-eos2/package.py
 2024-05-03 11:38:33 -07:00
Jeff Hammond
23f16041cd NWChem ARMCI-MPI variant and optional TCE builds (#43883) 
* WIP NWChem with ARMCI-MPI and TCE optional
* rename armci-mpi to armcimpi
* add version for git
* add ARMCI-MPI support to NWChem package
   EXTERNAL_ARMCI_PATH needs to be set to the ARMCI-MPI package install prefix.
   I could not get it from spec["armcimpi"] but it worked to use the dependent build environment method to export a    generic environmental variable to use instead.
* i suppose i can maintain NWChem as well
* check rejects option that dozens of packages use
   i do not have time to fight with this nonsense
   Run . share/spack/setup-env.sh
   ==> Error: armcimpi version 'master' has extra arguments: 'branch'
   Valid arguments for a url fetcher are:
       'url', 'sha256', 'md5', 'sha1', 'sha224', 'sha384', 'sha512', and 'checksum'
   Error: Process completed with exit code 1.
* style
* ARMCI-MPI needs depends_on; the rest seems fixed
* fix ARMCI selection per review feedback from @zzzoom
   https://github.com/spack/spack/pull/43883#discussion_r1585014147
* address reviewer feedback from @yizeyi18
   https://github.com/spack/spack/pull/43883#discussion_r1587228084
   elaborate on what +extratce does, in terms of the NWChem build environment variables,
   some of which are documented on https://nwchemgit.github.io/TCE.html.
* style
* Update var/spack/repos/builtin/packages/nwchem/package.py

---------

Signed-off-by: Jeff Hammond <jeff.science@gmail.com>
Co-authored-by: Carlos Bederián <4043375+zzzoom@users.noreply.github.com>
 2024-05-03 11:13:54 -07:00
Frank Willmore
e2329adac0 Update package.py for vacuumms 1.2.0 (#43948) 
* updating vacuumms for new release
* formatting
* re-order versions and remove triple quote
 2024-05-03 11:06:15 -07:00