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Author SHA1 Message Date
Wileam Y. Phan
4cd8488139 intel-gtpin: add version 4.0 (#43216) 2024-03-18 11:09:29 +01:00
George Young
69a052841c py-cutadapt: updating to @4.7 (#43214) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2024-03-18 11:08:14 +01:00
Matthias Wolf
a3f39890c2 py-shacl: new version, update dependencies (#42905) 
* py-shacl: new version, update dependencies

Also updates the dependencies py-prettytable and py-rdflib.

* review comments

* Update var/spack/repos/builtin/packages/py-pyshacl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-poetry-core: add required 1.8.1

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2024-03-18 10:56:40 +01:00
Christopher Christofi
02d126ce2b py-geopandas: add new version 0.14.3 (#43235) 
* py-geopandas: add new version

* add when specification on setuptools requirement
 2024-03-18 10:52:19 +01:00
Christopher Christofi
339a63370f py-pyshp: add new version (#43234) 2024-03-18 10:23:11 +01:00
Christopher Christofi
fef6aed627 py-branca: add new package (#43236) 2024-03-18 10:16:58 +01:00
afzpatel
3445da807e rocm-smi-lib: remove standalone test and add build time test (#43129) 2024-03-18 10:13:08 +01:00
Pieter P
429c3598af Fix CMake generator documentation (#43232) 2024-03-18 10:02:33 +01:00
Todd Gamblin
3d8136493a performance: avoid jinja2 import at startup unless needed (#43237) 
`jinja2` can be a costly import, and right now it happens at startup every time we run
Spack. This slows down `spack --print-shell-vars` a bit, which is needed by `setup-env.*sh`.
 2024-03-18 10:00:37 +01:00
Sergey Kosukhin
8cd160db85 zlib-ng: add variant new_strategies (#43219) 2024-03-18 09:42:43 +01:00
Simon Pintarelli
a7dd756b34 gcc 12.3 ICE patch for aarch64 (#43093) 
* gcc12.3 patch for ICE on aarch64

* aarch64 ICE patch for gcc@13.2
 2024-03-18 09:12:49 +01:00
Thomas Padioleau
53be280681 Remove bundled fmt (#43210) 2024-03-17 21:43:40 -07:00
Seth R. Johnson
5ab10d57be geant4: add matinainer, clean args (#43218) develop-2024-03-17 2024-03-16 17:29:03 +00:00
dependabot[bot]
96061d2c00 build(deps): bump black from 24.2.0 to 24.3.0 in /lib/spack/docs (#43228) 
Bumps [black](https://github.com/psf/black) from 24.2.0 to 24.3.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.2.0...24.3.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-15 17:24:44 -06:00
dependabot[bot]
e78d20dc84 build(deps): bump black in /.github/workflows/style (#43227) 
Bumps [black](https://github.com/psf/black) from 24.2.0 to 24.3.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.2.0...24.3.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-15 16:09:59 -07:00
Adam J. Stewart
6d2341c109 py-black: add v24.3.0 (#43226) 2024-03-15 16:09:17 -07:00
Seth R. Johnson
968ad02473 geant4: patch old versions to work on new compiler/ubuntu (#43212) 
* geant4: patch old version for %clang@15

* Backport ascii-V10-07-03

* Apply to all compilers, but only for 10.5-10.6
 2024-03-15 12:22:08 -06:00
Jose E. Roman
b93882804f New patch release SLEPc 3.20.2 (#43211) 2024-03-15 09:51:08 -07:00
Wouter Deconinck
f58ebd4fbb pandora{pfa,sdk,monitoring}: new HEP package for particle flow analysis (#37714) 
* pandorapfa: new package

* pandorasdk: new package

* [@spackbot] updating style on behalf of wdconinc

* pandorasdk: use self.define

* pandoramonitoring: new package

* pandorasdk: new version 3.4.2

* pandora{pfa,sdk,monitoring}: add maintainer jmcarcell

Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>

* pandora{pfa,sdk,monitoring}: add maintainer jmcarcell

Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>

* pandora{pfa,sdk,monitoring}: add maintainer jmcarcell

Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>
 2024-03-15 14:58:36 +01:00
Massimiliano Culpo
6f7f9528e5 cray-rhel: add a lower bound to mgard (#43187) 2024-03-15 11:25:56 +01:00
Greg Becker
59c7ff8683 Allow compilers to be configured in packages.yaml (#42016) 
Co-authored-by: becker33 <becker33@users.noreply.github.com>
 2024-03-15 11:01:49 +01:00
John W. Parent
4495e0341d Clingo bootstrapping: Remove msvc constraint (#43199) 
Patch allowing Clingo to build with VS22 has landed both in Spack
and Clingo upstream, update Spack's bootstrap constraints to handle
this.

Additionally, properly scope the patch application in the clingo
package to handle upstream patch.
 2024-03-14 19:08:38 -06:00
eugeneswalker
ba39924046 e4s cray ci: mgard is broken, disable spec (#43194) 2024-03-14 14:06:36 -07:00
Sergey Kosukhin
751c3fef86 nag: add version 7.2.7200 (#43188) 2024-03-14 15:04:05 -06:00
Adrien Bernede
102811adb9 Fix Axom: index out of range when configuring axom~mpi on toss_4 (#43186) 2024-03-14 14:49:09 -06:00
Massimiliano Culpo
8f56eb620f Improve error message when an unknown compiler is requested (#43143) 
Fixes #43141
 2024-03-14 13:47:56 -07:00
Peter Scheibel
ec517b40e9 spack develop: stage build artifacts in same root as non-dev builds (#41373) 
Currently (outside of this PR) when you `spack develop` a path, this path is treated as the staging
directory (this means that for example all build artifacts are placed in the develop path).

This PR creates a separate staging directory for all `spack develop`ed builds. It looks like

```
# the stage root
/the-stage-root-for-all-spack-builds/
    spack-stage-<hash>
        # Spack packages inheriting CMakePackage put their build artifacts here
        spack-build-<hash>/
```

Unlike non-develop builds, there is no `spack-src` directory, `source_path` is the provided `dev_path`.
Instead, separately, in the `dev_path`, we have:

```
/dev/path/for/foo/
    build-{arch}-<hash> -> /the-stage-root-for-all-spack-builds/spack-stage-<hash>/
```

The main benefit of this is that build artifacts for out-of-source builds that are relative to
`Stage.path` are easily identified (and you can delete them with `spack clean`).

Other behavior added here:

- [x] A symlink is made from the `dev_path` to the stage directory. This symlink name incorporates
    spec details, so that multiple Spack environments that develop the same path will not conflict
    with one another

- [x] `spack cd` and `spack location` have added a `-c` shorthand for `--source-dir`

Spack builds can still change the develop path (in particular to keep track of applied patches), 
and for in-source builds, this doesn't change much (although logs would not be written into 
the develop path). Packages inheriting from `CMakePackage` should get this benefit
automatically though.
 2024-03-14 13:32:01 -07:00
Martin Aumüller
22cb3815fe ispc: add v1.22.0 & v1.23.0 (#43159) 
* ispc: add v1.22.0 & v1.23.0
* ispc: fix build on macos
  apply upstream patch
* ispc: demote llvm to just a build dependency
  still builds fine
 2024-03-14 10:59:45 -07:00
Greg Becker
f549354f78 move --deprecated arg to concretizer args (#43177) 2024-03-14 18:43:52 +01:00
Scott Wittenburg
dc212d0e59 mgard: add version 2023-12-09 (1.5.2) (#41493) 2024-03-14 11:15:47 -06:00
victor-decaria-nnl
8f14acb139 mfem: add MUMPs option (#42929) 
* Added MUMPs option to mfem
* implement suggestions
* loosened mumps+metis dependency to just mumps
 2024-03-14 09:09:24 -07:00
Harmen Stoppels
c38ef72b06 compiler.py: simplify implicit link dir bits (#43078) 2024-03-14 08:54:47 +01:00
jmuddnv
7d67d9ece4 nvhpc: add v24.3 (#43175) 2024-03-14 08:35:09 +01:00
Carlos Bederián
2c30962c74 amduprof: new package (#30575) 
Co-authored-by: zzzoom <zzzoom@users.noreply.github.com>
 2024-03-14 07:44:43 +01:00
dependabot[bot]
cc28334049 build(deps): bump pytest from 8.0.2 to 8.1.1 in /lib/spack/docs (#43134) 
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.2 to 8.1.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.0.2...8.1.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-14 07:40:15 +01:00
dependabot[bot]
dbdf5bacc4 build(deps): bump actions/checkout from 4.1.1 to 4.1.2 (#43152) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.1 to 4.1.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](b4ffde65f4...9bb56186c3)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-14 05:55:08 +01:00
Rocco Meli
531f01f0b9 highway: add v1.1.0 (#43174) 2024-03-14 05:43:37 +01:00
Sebastian Pipping
794593b478 expat: Add release 2.6.2 with security fixes (#43171) 2024-03-13 22:43:00 -06:00
Tom Scogland
afcf0d2e39 llvm-openmp: make llvm-openmp consistent with other llvm builds (#43165) 
Add current versions of the 17 and 18 releases

Stop making it nearly impossible to compose this correctly with code built with gcc

Build for compatibility by default like we do in every other llvm package
 2024-03-14 05:34:09 +01:00
dependabot[bot]
29ee861366 build(deps): bump docker/login-action from 3.0.0 to 3.1.0 (#43176) 
Bumps [docker/login-action](https://github.com/docker/login-action) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](343f7c4344...e92390c5fb)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-03-14 05:27:16 +01:00
John W. Parent
b1a984ef02 msvc: patch property ref bug (#43173) 2024-03-13 22:28:36 +00:00
Christopher Christofi
cc545d8c9a jags: add version 4.3.2 (#43166) 2024-03-13 23:06:03 +01:00
Ashwin Kumar Karnad
49ff816fb0 octopus: disable gdlib by default (#43161) 2024-03-13 13:04:39 -06:00
Ashwin Kumar Karnad
8c33841567 Add iamashwin99 as a maintainer in Octopus package (#43163) 2024-03-13 12:59:41 -06:00
Ashwin Kumar Karnad
21b50fbbe3 octopus: Support new version octopus@14 (#43160) 
* add checksum for octopus 14

* Update dependencies for BerkeleyGW package
 2024-03-13 12:59:16 -06:00
Martin Aumüller
2a8e503a04 protobuf: apply centos 8 patch only to @3.4: (#43162) 
does not apply cleanly to older versions
 2024-03-13 12:54:02 -06:00
Wileam Y. Phan
4b695d4722 rocm-openmp-extras: Fix resource download URLs (#43147) 
* rocm-openmp-extras: Fix resource download URLs

* Apply review suggestions
 2024-03-13 12:53:46 -06:00
Juan Miguel Carceller
2fa816184e py-ruff: add version 0.3.0 and deprecate the oldest version (#43069) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-03-13 11:03:28 -07:00
Brian Spilner
25f622e809 update to cdo-2.4.0 (#43071) 2024-03-13 11:01:41 -07:00
吴坎
7506acabe7 antlr4-cpp-runtime: update dependencies (#43115) 
* update dependencies

* Update package.py
 2024-03-13 11:00:54 -07:00