zhangyiss/spack
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16 Commits

Author SHA1 Message Date
Ricardo Silva
3fc8203b93 bcftools: do not use bundled htslib (#10445) 
* if the path to htslib is not specified the bundled one is built instead
* additionally this fixes the build with the intel compiler
 2019-01-26 16:21:04 +01:00
Todd Gamblin
6f50cd52ed copyright: update license headers for 2013-2019 copyright. 2019-01-01 00:44:28 -08:00
Justin Stanley
d048bbb7ee bcftools: add version 1.9 (#9595) 2018-10-19 17:30:52 -07:00
Todd Gamblin
eea786f4e8 relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers 
- remove the old LGPL license headers from all files in Spack
- add SPDX headers to all files
  - core and most packages are (Apache-2.0 OR MIT)
  - a very small number of remaining packages are LGPL-2.1-only
 2018-10-17 14:42:06 -07:00
健美猫
c53541e448 Bump samtools, hstlib and bcftools to version 1.8. (#8020) 
* Bump samtools and hstlib to version 1.8.

* rm .bak.

* Bump bcftools to 1.8.

* bcftools@1.8 depends on libzip.
 2018-05-04 16:27:54 -05:00
Levi Baber
dfc4a2aef1 bcftools: new version (#7930) 2018-04-26 22:48:01 -05:00
Todd Gamblin
54f97d1dec
Update copyright on LLNL files for 2018. (#7592) 2018-03-24 12:13:52 -07:00
健美猫
b733ce1e5f bcftools is a AutotoolsPackage. (#6881) 2018-01-10 09:45:05 -06:00
Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack (#6142) 
We moved to a new GitHub org! Now make the code and docs reflect that.
 2017-11-04 17:08:04 -07:00
George Hartzell
ff031de800 Add old version to bcftools (#5907) 
* bcftools v1.2 and htslib v1.2

* dependency change - only require dependencies for v1.2
 2017-10-25 12:20:42 +02:00
Carlos Bederián
db149876a4 samtools: add version 1.6 + some fixes (#5715) 
* htslib: add version 1.6

* samtools: add version 1.6, remove zlib dependency

* bcftools: add version 1.6, switch to using standalone htslib
 2017-10-12 10:08:31 -06:00
Michael Kuhn
84ae7872d3 Update copyright notices for 2017 (#5295) 2017-09-06 17:44:16 -10:00
Audrey Thoma
3eedbd7c4e py-deeptools: new package and dependencies (#4717) 
* py-deeptools: new package and dependencies

* py-deeptools: fixing python things

* missed a fix
 2017-07-13 22:02:08 -05:00
Todd Gamblin
cac4362f64 Make LICENSE recognizable by GitHub. (#4598) 2017-06-24 22:22:55 -07:00
George Hartzell
d6cbae81c7 Update/samtools (#3595) 
* Update samtools family to 1.4

* simple cleanup

* Make bzip depends_on for future versions too
 2017-03-28 21:34:41 -05:00
George Hartzell
fd11db92e1 Add package for bcftools 2016-08-04 14:18:03 -04:00