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Author SHA1 Message Date
iarspider
95fd9ff6c1 Add photos 3.64; add hepmc2/hepmc3 variants (#21795) 2021-02-19 14:55:04 +01:00
Tom Payerle
f5e65e94e6 documentation: correct precedence of included configs in environment spack.yaml (#18663) 
fixes #17993
 2021-02-19 13:31:47 +00:00
iarspider
3d2b08a971 py-parso: add v0.8.1 (#21798) 2021-02-19 14:14:01 +01:00
Filippo Spiga
048adfdc1b Adding CUDA SDK 11.2.1 (#21800) 2021-02-19 12:11:51 +00:00
Xavier Delaruelle
36f0154130 environment-modules: add v4.7.0 (#21799) 2021-02-19 13:03:46 +01:00
BerengerBerthoul
201000daca Update scotch package for int32 (#21728) 2021-02-19 12:14:36 +01:00
Bryan Herman
2019d1deb7 CGNS: set parallel build to False to fix cp error (#21766) 2021-02-19 12:11:07 +01:00
iarspider
802ac63991 MCUtils: migration to gitlab (#21771) 2021-02-19 11:35:27 +01:00
Filippo Spiga
eff59ba9d6 nvhpc: add v21.2 (#21796) 2021-02-19 10:31:09 +00:00
holrock
e1c5952130 ruby: remove unwanted dependencies (#21797) 
ruby/tk is removed from stdlib at ruby2.4.0
 2021-02-19 10:28:22 +00:00
iarspider
554e736a14 gperftools: add v2.8.1 (#21794) 2021-02-19 11:09:46 +01:00
Greg Becker
de5a396ecb bugfix: add build deps to 'full hash' (#21735) 
The "full hash" was only including the link/run deps, but it should include build deps as well.
 2021-02-19 00:51:00 -08:00
iarspider
14897df02b davix: add v0.7.6 (#21773) 2021-02-19 09:37:56 +01:00
Brian Van Essen
23e22ae623 Updates to the LBANN software stack (#21733) 
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to
C++17.  The minumim C++ standard for Aluminum is C++14.  Add new
versions for Aluminum, Hydrogen, and DiHydrogen.  Added support for
high performance linkers in LBANN recipe (gold and lld).  Added
variants to LBANN for enabling embedded Python support independently
from the Python front end.
 2021-02-19 09:32:17 +01:00
h-denpo
e772291df1 blast2go: conflicts for platforms other than x86_64 (#21693) 2021-02-19 08:29:33 +00:00
Tomoyasu Nojiri
310e82c863 hdf-eos5: fix hdf5 dependency (#21789) 2021-02-19 09:16:13 +01:00
darmac
901aefc6a5 librelp: add test dependency on valgrind (#21752) 2021-02-19 07:47:50 +01:00
darmac
43cf529594 py-sip: change url because some old package is missing (#21402) 2021-02-18 19:52:00 -06:00
Scott Wittenburg
6b509a95da Pipelines: Move PR testing stacks (currently only E4S) into spack (#21714) 2021-02-18 18:50:57 -07:00
Severin Strobl
0da2b82df2 Fixed conditional in match_flag for fish env (#21679) 
An attempt to fix the conditional was made in 5a771bc8ad, yet this broke
the conditional completely.
 2021-02-18 23:29:23 +00:00
emai-imcs
70b81dc48d py-fenics-instant: new package for legacy fenics 2016 and 2017 versions (#21775) 
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions

* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-02-18 23:02:39 +00:00
Tom Payerle
362a4bb8b9 Fix template for Rpackage in spack create command (#21776) 
The signature for configure_args in the template for new
RPackage packages was incorrect (different than what is
defined and used in lib/spack/spack/build_systems/r.py)

See issue #21774
 2021-02-18 22:40:21 +00:00
Massimiliano Culpo
f2e3edf6db Testing: use spack.store.use_store everywhere (#21656) 
Keep spack.store.store and spack.store.db consistent in unit tests

* Remove calls to monkeypatch for spack.store.store and spack.store.db:
  tests that used these called one or the other, which lead to
  inconsistencies (the tests passed regardless but were fragile as a
  result)
* Fixtures making use of monkeypatch with mock_store now use the
  updated use_store function, which sets store.store and store.db
  consistently
* subprocess_context.TestState now transfers the serializes and
  restores spack.store.store (without the monkeypatch changes this
  would have created inconsistencies)
 2021-02-18 13:22:49 -08:00
Satish Balay
cbcf8d208b xsdk: fix @develop build (#21749) 
- petsc4py: update @develop build from petsc repo
- omega-h: develop branch is now main branch
 2021-02-18 14:41:36 -06:00
Seth R. Johnson
2d917e17d9 flibcpp: Activate SWIG rebuild when +swig (#21767) 
This option allows downstream packages to build with SWIG and the flibcpp-exported SWIG interfaces.
 2021-02-18 19:12:18 +00:00
Tom Payerle
b448b639e6 Documentation fix: build_system configure_args for #21760 (#21761) 
Corrects the signature for configure_args (and therefore configure_vars)
in documentation on RPackage build system to match the code
See issue #21760
 2021-02-18 18:08:48 +00:00
Gregory Lee
3364e5550f patches to apply to gdbm and m4 when using oneapi compiler (#21740) 2021-02-18 09:39:20 -08:00
Sebastian Schmitt
8e3ac8577f Arbor: rely on spack's compiler wrapper to set architecture (#21758) 2021-02-18 15:02:09 +00:00
ketsubouchi
432625ca26 openrasmol: new package (#21530) 2021-02-18 13:09:38 +01:00
Freifrau von Bleifrei
ed1540efa3 sgpp: use spack compiler instead of default gcc (#21756) 
Co-authored-by: Theresa Pollinger <pollinta@ipvs.uni-stuttgart.de>
 2021-02-18 11:28:42 +00:00
Mikael Simberg
651c6ea350 hpx: add v1.6.0 (#21757) 2021-02-18 10:42:19 +00:00
Sergey Kosukhin
3273529936 eccodes: add v2.20.0 (#21703) 2021-02-18 11:20:53 +01:00
Tomoyasu Nojiri
93d9bed192 enzo: fix for aarch64 (#21715) 2021-02-18 11:14:18 +01:00
Xavier Delaruelle
54ee955b76 tcl: add v8.6.11 (#21678) 2021-02-18 11:04:38 +01:00
h-denpo
20fd4e35de dlib: fix dependency on opencv (#21718) 
Since a variant (imgcodecs,default=False) has been added to opencv,
+imgcodecs is now required in dlib's opencv dependency.
 2021-02-18 11:02:24 +01:00
m-shunji
9771903533 quantum-espresso: fix ldflags for scalapack (#21719) 2021-02-18 11:00:19 +01:00
Harmen Stoppels
1e16fcfd91 cmake: add v3.18.6, v3.19.5 (#21725) 2021-02-18 10:53:05 +01:00
Michael Kuhn
fd85f79e18 osu-micro-benchmarks: add v5.7 (#21729) 2021-02-18 10:48:41 +01:00
Erik Schnetter
7fe131e444 nsimd: add v2.2 (#21743) 2021-02-18 10:33:09 +01:00
holrock
5f6d77f4c4 ruby: add v2.7.2, v3.0.0 (#21745) 2021-02-18 10:17:41 +01:00
Desmond Orton
94e2eee778 sratoolkit: add v2.10.9 (#21746) 2021-02-18 10:17:12 +01:00
darmac
76304595d5 ctpl: add dependency on gettext (#21747) 2021-02-18 10:07:38 +01:00
Adam J. Stewart
7ac156fb12 py-scipy: add v1.6.1 (#21748) 2021-02-18 10:06:44 +01:00
darmac
598f0c89fd vcsh: add bin as a directory (#21750) 2021-02-18 10:06:03 +01:00
ketsubouchi
b3e5df1049 cbflib: new package (#21531) 2021-02-18 10:05:32 +01:00
darmac
de68646c6e openfst: fix conflicts version for gcc (#21753) 2021-02-18 10:01:43 +01:00
Todd Gamblin
7d586234ee bugfix: relax racy test in fg/bg output (#21755) 
Since signals are fundamentally racy, We can't bound the amount of time
that the `test_foreground_background_output` test will take to get to
'on', we can only observe that it transitions to 'on'. So instead of
using an arbitrary limit, just adjust the test to allow either 'on' or
'off' followed by 'on'.

This should eliminate the spurious errors we see in CI.
 2021-02-18 08:33:08 +00:00
Massimiliano Culpo
8aaf31b166 Avoid spurious warning from clingo (#21731) 
There's a spurious warning that occurs whenever a spec being concretized 
does not depend on a virtual provider under any possible configuration.
 2021-02-18 08:13:50 +01:00
emai-imcs
acc7169fdc py-fenics-ufl: inclusion of version 2016.2.0 (#21738) 
* fix to pre 2019.1.0 version and support for 2016.1.0 added

* added 2016.2.0 version for retro dolfin support
 2021-02-17 21:44:48 -06:00
emai-imcs
0082750f86 fix to compiliation error with fenics in pre 2019 versions and support for 2016.2.0 version of fiat added (#21708) 2021-02-17 21:44:12 -06:00