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Author SHA1 Message Date
Sinan
aa1820eb5c pdal: new package (#42714) 
* new package pdal

* [@spackbot] updating style on behalf of Sinan81

* fix style

* add license

* Update var/spack/repos/builtin/packages/pdal/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* [@spackbot] updating style on behalf of Sinan81

* Update var/spack/repos/builtin/packages/pdal/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* Update var/spack/repos/builtin/packages/pdal/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* improve dependency spec

* add maintainer

* add conflict

* fix bug

* improve

* improve

* [@spackbot] updating style on behalf of Sinan81

* fix style

* specify cmake dependency version

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
Co-authored-by: Alec Scott <alec@bcs.sh>
develop-2024-02-18 		2024-02-17 13:40:40 -08:00
George Young
16ea5f68ba cryodrgn: new package @2.3.0 (#42443) 
* cryodrgn: new package @2.3.0

* correcting dependency ranges

* correcting dependency ranges

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2024-02-17 15:07:56 -06:00
Dani
aeec515b4f new builtin package: py-biobb-structure-utils (#42683) 2024-02-17 14:42:10 -06:00
Maciej Wójcik
6e2ec2950b py-kubernetes: add new versions (#42670) 
* py-kubernetes: add new versions

* py-oauthlib: add new version
 2024-02-17 14:32:20 -06:00
Maciej Wójcik
fe5772898d py-azure-... and py-msrest: add new versions (#42624) 
* py-azure-batch: add new versions

* py-azure-core: add new versions

* py-azure-identity: add new versions

* py-azure-mgmt-batch: add new versions

* py-azure-mgmt-core: add new versions

* py-azure-storage-blob: add new versions

* py-msrest: add new versions

* Whitespace

* Whitespace

* py-msrest: add a note

* py-msrest: version-dependent URL

* py-azure-mgmt-batch: correct version of dependency
 2024-02-17 14:24:11 -06:00
Alex Leute
384ddf8e93 py-smote-variants: Added package py-smote-variants (#42502) 
* py-smote-variants: Added package py-smote-variants

Also added py-minisom and py-metric-learn as dependencies

* py-metric-learn: Added build dependency on setuptools

* py-smote-variants: Added a dependency on py-pytest-runner

As well as a comment about why statistics isn't included

* [@spackbot] updating style on behalf of alex391

---------

Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2024-02-17 14:20:03 -06:00
Tom Vander Aa
32c2e240f8 py-charm4py: needs Cython<3.0 (#42491) 
* py-charm4py: needs Cython<3.0

* Update var/spack/repos/builtin/packages/py-charm4py/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2024-02-17 14:16:31 -06:00
dependabot[bot]
b88c4792a7 build(deps): bump clingo from 5.6.2 to 5.7.1 in /.github/workflows/style (#42732) 
Bumps [clingo](https://github.com/potassco/clingo) from 5.6.2 to 5.7.1.
- [Release notes](https://github.com/potassco/clingo/releases)
- [Changelog](https://github.com/potassco/clingo/blob/master/CHANGES.md)
- [Commits](https://github.com/potassco/clingo/compare/v5.6.2...v5.7.1)

---
updated-dependencies:
- dependency-name: clingo
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-16 22:24:10 -08:00
dependabot[bot]
ac92e94b00 build(deps): bump pytest from 8.0.0 to 8.0.1 in /lib/spack/docs (#42733) 
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.0 to 8.0.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.0.0...8.0.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-16 22:23:13 -08:00
Luc Berger
4a01865f7b Kokkos Ecosystem: update for release 4.2.01 (#42711) 
* Kokkos Ecosystem: update for release 4.2.01

Will rebase this on top of develop once Kokkos Core PR merges.

* Kokkos Ecosystem: update license statement to reflect current license
 2024-02-16 17:28:29 -07:00
Sebastian Pipping
025165e22e expat: Add latest release 2.6.0 with security fixes (#42680) 
* expat: Add latest release 2.6.0 with security fixes

* expat: Deprecate vulnerable 2.5.0

* expat: Add past CVEs and where they were fixed
 2024-02-16 17:23:46 -07:00
SXS Bot
cda9bc3e1d spectre: add v2024.02.05 (#42496) 
* spectre: add v2024.02.05

* [@spackbot] updating style on behalf of sxs-bot

---------

Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2024-02-16 15:49:06 -07:00
Lydéric Debusschère
caf21dda42 rust: enable vendor (#42365) 
* rust: enable vendor

* rust: modify vendor description; move the call of variant

* rust: fix style

* rust: typo

* rust: remove variant 'vendor' to let vendoring as default fonctionality

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
 2024-02-16 14:13:44 -08:00
HELICS-bot
e1779a2884 helics: Add version 3.5.0 (#42572) 
* helics: Add version 3.5.0

* helics: define CMAKE_CXX_STANDARD=20 when GCC>=13 is used to compile

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ryan Mast <mast9@llnl.gov>
 2024-02-16 14:12:50 -08:00
Adam J. Stewart
f55a018fd9 py-torchmetrics: add v1.3.1 (#42638) 2024-02-16 14:00:43 -08:00
dependabot[bot]
f5964e1dde build(deps): bump black in /.github/workflows/style (#42631) 
Bumps [black](https://github.com/psf/black) from 24.1.1 to 24.2.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.1.1...24.2.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-16 13:52:38 -08:00
dependabot[bot]
23e0fe2e21 build(deps): bump black from 24.1.1 to 24.2.0 in /lib/spack/docs (#42629) 
Bumps [black](https://github.com/psf/black) from 24.1.1 to 24.2.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.1.1...24.2.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-16 13:51:50 -08:00
dependabot[bot]
44438e6171 build(deps): bump python-levenshtein in /lib/spack/docs (#42630) 
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.24.0 to 0.25.0.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.24.0...v0.25.0)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-16 13:51:12 -08:00
Martin Lang
af8e000a93 bigdft-futile: new versions 1.9.3, 1.9.4 (#42646) 2024-02-16 13:41:18 -08:00
Adam J. Stewart
375b82a593 py-black: add v24.2.0 (#42639) 2024-02-16 13:39:16 -08:00
Adam J. Stewart
2030e2b089 py-jsonargparse: add v4.27.5 (#42640) 2024-02-16 13:38:17 -08:00
Carlos Bederián
34aba94148 openmpi: add ucc to fabrics (#41889) 2024-02-16 22:37:00 +01:00
Nicolas Morales
43c909e19c Update maintainers for Kokkos and add Kokkos 4.2.1 (#42690) 
* update kokkos spack package maintainers

* add Kokkos 4.2.01

* Update var/spack/repos/builtin/packages/kokkos/package.py

Co-authored-by: Luc Berger <lberge@sandia.gov>

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
Co-authored-by: Luc Berger <lberge@sandia.gov>
 2024-02-16 11:12:36 -07:00
Martin Lang
7c011d304f nfft: new versions 3.5.1, 3.5.2, 3.5.3 (#42645) 2024-02-16 09:58:03 -08:00
Martin Lang
1546fc7e5f dftbplus: new versions 22.2, 23.1 (#42647) 2024-02-16 09:55:53 -08:00
Rob Falgout
75a134f085 Update package.py for hypre release 2.31.0 (#42689) 2024-02-16 11:46:29 -06:00
Alex Richert
d0c4675a9b Add aocc support to ESMF (#42708) 
* Add aocc support to ESMF

* Update package.py
 2024-02-16 09:33:47 -08:00
WuK
0507c3c63d add new CUTLASS versions (#42715) 2024-02-16 09:23:50 -08:00
dependabot[bot]
59caa93571 build(deps): bump dorny/paths-filter from 3.0.0 to 3.0.1 (#42710) 
Bumps [dorny/paths-filter](https://github.com/dorny/paths-filter) from 3.0.0 to 3.0.1.
- [Release notes](https://github.com/dorny/paths-filter/releases)
- [Changelog](https://github.com/dorny/paths-filter/blob/master/CHANGELOG.md)
- [Commits](0bc4621a31...ebc4d7e9eb)

---
updated-dependencies:
- dependency-name: dorny/paths-filter
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-02-16 09:16:35 -08:00
Arne Becker
b4b53a9a9f perl-datetime-format-iso8601: New package (#42719) 
Adds DateTime::Format::ISO8601
 2024-02-16 09:15:54 -08:00
Todd Gamblin
be1cfffa45 clingo: add version 5.7.0 (#42707) 
5.7.0 was just released. It includes a number of changes requested and/or
upstreamed by Spack developers, e.g.:

* API for accessing optimization priorities: https://github.com/potassco/clingo/pull/406
* Hash optimization: https://github.com/potassco/clingo/pull/441
* Contributing Guide: https://github.com/potassco/clingo/pull/465
* Hiding more ELF symbols:
  * https://github.com/potassco/clingo/pull/447
  * https://github.com/potassco/clingo/pull/449
 2024-02-16 18:14:19 +01:00
Victor Lopez Herrero
75b7109222 dlb: add v3.4 (#42722) 2024-02-16 09:13:23 -08:00
Mikael Simberg
c56cf8c0d2 Add support for clang with OpenMP and other minor changes to oneapi build system (#42717) 
* Add support for clang in oneapi packages with OpenMP

* Add fallback search for libomp in OneApi package with OpenMP threading

* Add requires for the compiler when using threads=openmp in intel-oneapi-mkl

* Cosmetic changes to messages in oneapi.py

* Update error message in oneapi.py

Co-authored-by: Robert Cohn <rscohn2@gmail.com>

* Update another error message in oneapi.py

Co-authored-by: Robert Cohn <rscohn2@gmail.com>

* Inline helper error function in oneapi.py

* Update one more error message in oneapi.py

* Wrap long line in oneapi.py

---------

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
 2024-02-16 11:39:31 -05:00
Robert Cohn
5c3df6e8ca [intel-oneapi-mkl] provide omp lib for threads=openmp (#42653) 2024-02-16 08:48:42 +01:00
Tim Fuller
79087d08d9 allow packages to request no submodules be updated (#40409) 
* allow packages to request no submodules be updated when self.submodules is a
  callable function

* Extend the test added in Allow more fine-grained control over what submodules are
  updated: part 2 #27293 to include this case

* Update the type signature for the submodules arg of version() in directives.py

---------

Co-authored-by: tjfulle <tjfulle@users.noreply.github.com>
 2024-02-15 22:36:37 -08:00
Victor Brunini
d31e503e5b develop: Add -b/--build-directory option to set build_directory package attribute (#39606) 
* develop: Add -b/--build-directory option to set build_directory package attribute.

* Update docs

---------

Co-authored-by: psakievich <psakiev@sandia.gov>
Co-authored-by: vbrunini <vbrunini@users.noreply.github.com>
 2024-02-16 06:30:58 +00:00
Eric Berquist
55b62c2168 SST: only run autoreconf for versions from Git branches (#42712) 2024-02-15 22:27:07 -06:00
Scott Wittenburg
6c3511ee1d Fix spack --profile|--pdb <cmd> (#42662) 2024-02-15 15:15:40 -07:00
Seth R. Johnson
d19fa74909 celeritas: new version 0.4.2 (#42702) 2024-02-15 16:41:10 +00:00
Jemma Stachelek
a2ad2d1c9f docs: fix typo (#42688) 2024-02-15 11:21:51 +01:00
Harmen Stoppels
55863bd680 compilers: fixup order of arguments to satisfies (#42682) 2024-02-15 10:21:06 +00:00
Harmen Stoppels
7d4dcd52d9 elpa: fix checksum (#42674) 2024-02-14 11:56:27 +01:00
Henrik Stooss
5e4e72ddd2 veclibfort: explicitly add platform=darwin as requirement (#42664) 2024-02-14 11:18:04 +01:00
John W. Parent
447c48e2fd VTK: limit patches to v8 (#42505) 
* VTK: limit patches to v8

* Finer scrope on patch version applicability
 2024-02-14 03:36:57 -06:00
Sreenivasa Murthy Kolam
3be4f4db86 Deprecate ROCm 5.1.0 till 5.2.3 (#41794) 2024-02-14 09:03:00 +01:00
John Pennycook
ca97a0fefb cmake: Enable compilation database generation (#42353) 
* cmake: Enable CMAKE_EXPORT_COMPILE_COMMANDS

Enabling this option causes CMake to generate a compile_commands.json file
containing a compilation database that can be used to drive third-party tools.

CMAKE_EXPORT_COMPILE_COMMANDS only exists for CMake >= 3.5

Exporting compilation databases is only supported for Makefile and Ninja
generators, so check these conditions as well.

CMAKE_EXPORT_COMPILE_COMMANDS is only enabled in supported configurations
 2024-02-13 16:47:40 -07:00
Jon Rood
59f56327fe Remove boost as dependency for trilinos+stk (#39556) 
* Remove boost as dependency for trilinos+stk.

* Formatting.

* Put bounds on STK requirement of Boost.
 2024-02-13 13:28:25 -07:00
Victor Brunini
e4c871489a boost: Add patch to workaround mpl compiler error with gcc 8.3 and c++17. (#39144) 
Works around this issue: https://github.com/boostorg/mpl/issues/44

Co-authored-by: psakievich <psakiev@sandia.gov>
 2024-02-13 12:23:13 -07:00
Nichols A. Romero
c048101d90 ELPA package: add patched version from Nov 2023 (#42539) 2024-02-13 10:47:28 -08:00
Alex Richert
e0304bf509 pdt: add aocc support (#42634) 2024-02-13 11:03:46 -07:00