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Commit Graph

4794 Commits

Author SHA1 Message Date
Eric
912e661056 new package: diffsplice (#7187) 2018-02-09 20:15:58 -08:00
Jed Brown
74ffd8b6be hpgmg package: add debug option and new version (#7175) 
This adds a static version of hpgmg (up to now only the latest commit
from the master branch was available). This also adds a debug variant
and sets optimization flags for ~debug when the compiler is gcc,
intel, or clang
 2018-02-09 19:01:49 -08:00
Jed Brown
ec162e69b2 petsc: use spack-built python for configure (#7176) 
Make sure to use Spack-built python to run petsc configure script
(in particular since petsc requires python@2.6:2.8)
 2018-02-09 13:11:03 -08:00
Geoffrey Oxberry
deb1a93f81 xbraid@2.2.0: new package (#7205) 2018-02-09 19:49:31 +01:00
Geoffrey Oxberry
5defe9ab00 git-imerge@1.1.0: new package (#7203) 2018-02-09 19:48:11 +01:00
Eric
0d34cdd77f py-checkm-genome: Create new package (#7200) 2018-02-09 19:37:16 +01:00
David Gardner
9d304ad585 fix petsc int64 metis dependencies (#7195) 2018-02-09 12:29:10 +01:00
Axel Huebl
e98bcaf3f5 libSplash: 1.7.0 (#7199) 
Adds the latest release of libSplash (1.7.0) and newly learned
CMake flags for explicit dependency control.

Modifies HDF5 dependency: non-MPI splash does (and did) never run
with a parallel HDF5, due to it's internal cross-dependencies on
MPI.
 2018-02-09 12:27:13 +01:00
Christoph Junghans
20225edde4 comd: more sane default (#7046) 
Avoid useless deps.
 2018-02-08 12:36:23 -05:00
Hans Pabst
8f5ece9ace LIBXSMM 1.8.3 (#7183) 2018-02-06 14:31:18 +01:00
Eric
26ff36f05f samblaster: Create new package (#7188) 2018-02-06 13:54:05 +01:00
Eric
167b5dc5d3 py-localcider: Create new package (#7189) 2018-02-06 13:52:37 +01:00
Geoffrey Oxberry
49e58992db oclint: new package (#7076) 2018-02-06 06:35:17 +01:00
Levi Baber
e25406c26b angsd: new version, and conflict for newer htslib with old version (#7122) 2018-02-05 18:33:12 +01:00
Mark Meredith
6c21d0bf31 Update fish url for fish 2.7.1 (#7089) 2018-02-04 09:05:44 +01:00
Thilina Rathnayake
970a4b2815 Update Nek5000 package to Version 17 (#7178) 
and minor polishing
 2018-02-03 17:05:14 -06:00
Erik Schnetter
927af929f4 highfive: Update to version 1.5 (#7041) 2018-02-03 10:22:03 +01:00
健美猫
caba978aa6 A new package: libcroco. (#7154) 2018-02-03 10:07:02 +01:00
Elizabeth Fischer
be5fa8f6c2 macOS Fix for GDAL (#7155) 2018-02-03 10:06:35 +01:00
Geoffrey Oxberry
4c9521b52b clingo@5.2.2: new package (#7091) 2018-02-03 10:05:06 +01:00
Eric
b6f1e0611c stringtie: add version 1.3.4a (#7164) 2018-02-03 09:52:51 +01:00
Eric
0b6d7f7397 new package: perl-exporter-tiny (#7030) 2018-02-02 10:28:45 -08:00
Feiyi Wang
27b033587b Efficient array of booleans, C extension (#7135) 2018-02-01 18:48:32 +00:00
Geoffrey Oxberry
514f0bf5c5 lz4 platform=darwin: fix dylib name (#7112) 2018-01-31 16:12:44 -08:00
Geoffrey Oxberry
7959c5ffd2 libdwarf: fix linking, fix build on Darwin (#7124) 
* libdwarf: fix linker flags

* libdwarf: fix header install names

* libdwarf: add zlib dependency

Prior to this commit, libdwarf was linked to the system zlib. This
commit links it to spack-installed zlib.

* libdwarf: fix dynamic library suffix for Darwin
 2018-01-31 16:12:25 -08:00
healther
bddc1556e1 symlink python3 to python (#7103) 
* symlink python3 to python

* otherwise not all autotools are smart enough

* Update package.py
 2018-01-31 16:11:25 -08:00
sknigh
ec7d069ba5 Added osu-micro-benchmarks@5.4 (#7149) 2018-01-31 16:10:14 -08:00
Brian Van Essen
c3034b53e3 Adding support for the Accelerate library on OS X (#7068) 
* Adding support for the Accelerate library on OS X

* Fixed guard on variable and added another depends_on statement to make sure that openblas gets selected even when openmp_blas variant is not turned on.
 2018-01-31 11:10:42 -08:00
Eric
fa65725263 fr-hit: Create new package (#7132) 2018-01-31 19:28:48 +01:00
Brian Van Essen
bc0f683e64 Protobuf fix (#7110) 
* Fixed a bug where when using shared libraries OS X does not set the RPATH correctly
 2018-01-31 09:39:53 -08:00
Brian Van Essen
06758fe5cb LBANN OS X (#7105) 
* Added a package for the MDAnalysis toolkit.

* Added some flags to fix the build RPATHs and OpenMP for LBANN on OS X.

* Fixed Hydrogen branch of Elemental to find OpenMP on OS X.
 2018-01-31 09:38:53 -08:00
Eric
60cc0b0b90 py-setuptools-git: Create new package (#7131) 2018-01-31 16:52:34 +01:00
Axel Huebl
cb5919b981 PNGwriter: 0.7.0 (#7026) 
Adds the latest release of PNGwriter, including
Windows and CMake config package support.
 2018-01-31 14:34:52 +01:00
sknigh
770100765f Added v1.4.2 to libfabric package (#7053) 2018-01-31 14:02:21 +01:00
Levi Baber
b59c3bcf02 abyss: added missing libtool dependency (#7054) 2018-01-31 14:01:49 +01:00
Axel Huebl
0d5ad7d843 openPMD-validator (#7064) 
Adds the new package for openPMD validator tools.
 2018-01-31 13:59:38 +01:00
Geoffrey Oxberry
ebaa106d7a ocaml@4.06.0: new version (#7078) 2018-01-31 13:49:17 +01:00
Geoffrey Oxberry
e8b4de7b4c re2c@1.0.3: new package (#7092) 2018-01-31 13:46:17 +01:00
Geoffrey Oxberry
b8b2c67b9c opam: new package (#7079) 2018-01-31 13:44:09 +01:00
Geoffrey Oxberry
148a2f0238 bmake@20171207: new package (#7099) 2018-01-31 13:42:41 +01:00
Geoffrey Oxberry
ae589c22f2 gcc: add version 7.3.0 (#7097) 2018-01-31 13:41:12 +01:00
Geoffrey Oxberry
804a6c5e1a lz4@1.8.1.2: new version (#7111) 2018-01-31 13:40:32 +01:00
Geoffrey Oxberry
a5758d97b3 libarchive@3.3.2: new version (#7113) 2018-01-31 13:39:58 +01:00
Denis Davydov
35746fdde1 rtags: add 2.17 and for now comment-out 2.12 (#7126) 2018-01-31 13:36:22 +01:00
lingnanyuan
cef4c2fa1c maq: Create new package. (#7133) 2018-01-31 13:12:43 +01:00
Eric
cd084d02ce rna-seqc package: JAVA_{ARGS,OPTS} for helper script (#6972) 2018-01-29 20:23:59 -08:00
Geoffrey Oxberry
784234ae8e libtool, binutils: fix darwin linking (#7073) 
* libtool: fix linking of libtool on darwin

* binutils, libtool: fix conflicts w/ BSD tools, v2

Fix namespace conflicts with BSD tools in a more elegant fashion,
using a program prefix, similar to Homebrew.
 2018-01-28 15:36:24 +01:00
George Hartzell
970c7e8f45 Tell R's configure about tcltk config (#7085) 
* Tell R's configure about tcltk config

Add configure arguments that specify the location of
the tcl and tk config scripts.

Fixes #7072

* Flake8 cleanup
 2018-01-26 20:51:38 -06:00
Brian Van Essen
1cd03e0f36 new package: essl (#6335) 
Added support for the IBM ESSL math library.Updated Elemental to be
able to build with ESSL.
 2018-01-26 10:38:37 -08:00
Massimiliano Culpo
7cb43e3d05 Bzip2 now uses 'spack_cc' as a compiler, instead of plain 'cc' (#7074) 
Looking at build logs, it seems that prior to this commit bzip2 was
using 'cc', and relying on the PATH to be set correctly to find Spack
wrappers. This commit improves the robustness of the recipe, by using
the absolute path of the wrapper.
 2018-01-26 09:52:04 +01:00