Commit Graph

37239 Commits

Author SHA1 Message Date
Thomas-Ulrich
ee1a2d94ad bison: conflict %oneapi due to possible miscompilation (#40860) 2023-11-14 17:58:17 +01:00
Harmen Stoppels
25eca56909 gmake: fix bootstrap (#41060) 2023-11-14 17:44:48 +01:00
Massimiliano Culpo
2ac128a3ad Add papyrus to the list of broken tests (#40923)
* Disable papyrus in the neoverse v1 pipeline
   See https://gitlab.spack.io/spack/spack/-/jobs/8983875
   The job is hanging on tests for 6 hrs.
* Add papyrus to broken tests instead of removing it
2023-11-14 07:37:29 -08:00
Massimiliano Culpo
1255620a14 Fix infinite recursion when computing concretization errors (#41061) 2023-11-14 14:44:58 +01:00
Harmen Stoppels
18ebef60aa R: cleanup recipe and fix linking to lapack libraries (#41040) 2023-11-14 14:44:36 +01:00
Dennis Klein
6fc8679fb4 fairmq: add v1.8.1 (#41007) 2023-11-14 12:55:09 +01:00
Massimiliano Culpo
8a8dcb9479 modules: unit-tests without polluted user scope (#41041) 2023-11-14 10:29:28 +00:00
Adam J. Stewart
a6179f26b9 GDAL: add v3.8.0 (#41047) 2023-11-14 03:01:31 -06:00
Martin Aumüller
0dc73884c7 ispc: add v1.21 and v1.21.1 (#41053) 2023-11-14 09:38:08 +01:00
dependabot[bot]
a80b4fd20d build(deps): bump urllib3 from 2.0.7 to 2.1.0 in /lib/spack/docs (#41055)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.7 to 2.1.0.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.7...2.1.0)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-14 09:33:41 +01:00
Wouter Deconinck
c264cf12a2 dd4hep: avoid IndexError in setup_run_environment (#41051)
Some environments may have `dd4hep` as a concretized package without having it installed (yet). For those environments, `dd4hep` has property `libs` that is an empty list. Nevertheless, it can be added to a run environment (for example in case `dd4hep` is part of an environment). This results in an IndexError:
```
==> Warning: couldn't load runtime environment due to IndexError: list index out of range
```
To avoid the IndexError, only prepend the `dd4hep` libs if there are actually libs found.
2023-11-14 09:25:56 +01:00
Raffaele Solcà
769474fcb0 DLA-future: add v0.3.0 (#41042) 2023-11-14 09:25:08 +01:00
Adam J. Stewart
ab60bfe36a py-numpy: add v1.26.2 (#41046) 2023-11-13 16:41:05 -07:00
John W. Parent
8bcc3e2820 CMake Package: support building ~ownlibs on Windows (#38758) 2023-11-13 14:26:33 -08:00
Hariharan Devarajan
388f141a92 Release Brahma v0.0.2 (#40994) 2023-11-13 14:25:12 -08:00
Todd Gamblin
f74b083a15 info: improve coverage (#41001)
Tests didn't cover the new `--variants-by-name` parameter in #40998.
Add some parameterization to hit that.

This changeset makes me think that the main section-printing loop in `spack info` isn't
factored so well. It makes it difficult to pass different arguments to different helper
functions.  I could break it out into if statements if folks think that would be cleaner.
2023-11-13 13:45:18 -08:00
heatherkellyucl
5b9d260054 gzip: deprecate <1.13 for vulnerability (#41044) 2023-11-13 13:38:16 -07:00
Greg Becker
4bd47d89db spack diff: allow hashes from mirrors (#41043) 2023-11-13 12:27:52 -08:00
Daniel Arndt
96f3c76052 dealii: add v9.5.0, v9.5.1 (#40747)
* dealii: 9.5.0

* kokkos+cuda_lambda

* dealii ^kokkos@3.7: require +cuda +cuda_lambda +wrapper

* Added 9.5.1, try ~cgal when +cuda

* Forward Cuda architecture request

* Remove workaround

* Try not enforcing the Kokkos compiler

* Enforce using nvcc_wrapper with Trilinos+Cuda

* Don't define CMAKE_*_COMPILER to point to MPI wrappers

* Use the same compiler as Trilinos/Kokkos

* Only check for Trilinos compiler

* Disable Trilinos+Cuda

* Disable Cuda support

* Try CUDA build without ninja

* Combined examples and examples_compile

* Use f-string for cuda_arch

* p -> _package

* Indentation

* Fix up f-string

---------

Co-authored-by: Luca Heltai <luca.heltai@sissa.it>
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-11-13 12:29:55 -06:00
H. Joe Lee
9c74eda61f hdf5: add a new variant for enabling sub-filing VFD (#40804) 2023-11-13 11:18:02 -07:00
dependabot[bot]
d9de93a0fc build(deps): bump black from 23.10.1 to 23.11.0 in /lib/spack/docs (#40967)
Bumps [black](https://github.com/psf/black) from 23.10.1 to 23.11.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.10.1...23.11.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 08:18:06 -07:00
Wouter Deconinck
3892fadbf6 qwt: conflict with qt-base (Qt6) (#40883) 2023-11-13 12:42:37 +01:00
Glenn Horton-Smith
62b32080a8 epics-base: patch to avoid failure on "perl xsubpp" when "xsubpp" otherwise works fine. (#40849) 2023-11-13 12:29:51 +01:00
Wanlin Wang
09d66168c4 riscv-gnu-toolchain: add v2023.09.13 -> v2023.10.18 (#40854) 2023-11-13 12:19:09 +01:00
Tuomas Koskela
d7869da36b conquest: add build system changes and library paths (#40718) 2023-11-13 12:13:53 +01:00
Mikael Simberg
b6864fb1c3 Add license directives to various packages (#41039) 2023-11-13 04:03:48 -07:00
Harmen Stoppels
e6125061e1 Compiler.debug_flags: drop -gz (#40900)
That enables compression of the debug symbols, it doesn't toggle them on
or off.
2023-11-13 11:33:40 +01:00
dependabot[bot]
491bd48897 build(deps): bump black in /.github/workflows/style (#40968)
Bumps [black](https://github.com/psf/black) from 23.10.1 to 23.11.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.10.1...23.11.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 11:18:52 +01:00
Victoria Cherkas
ad4878f770 metkit: add v1.10.2 and v1.10.17 (#40668) 2023-11-13 10:56:52 +01:00
Satish Balay
420eff11b7 superlu-dist: add v8.2.0 (#41004) 2023-11-13 10:55:05 +01:00
Adam J. Stewart
15e7aaf94d py-mypy: add v1.4:v1.7 (#41015) 2023-11-13 10:33:33 +01:00
Adam J. Stewart
bd6c5ec82d py-pandas: add v2.1.3 (#41017) 2023-11-13 10:26:56 +01:00
dependabot[bot]
4e171453c0 build(deps): bump mypy from 1.6.1 to 1.7.0 in /lib/spack/docs (#41020)
Bumps [mypy](https://github.com/python/mypy) from 1.6.1 to 1.7.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.6.1...v1.7.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 10:13:26 +01:00
Adam J. Stewart
420bce5cd2 GEOS: add new versions (#41030) 2023-11-13 10:09:58 +01:00
Thomas Gruber
b4f6c49bc0 likwid: add 5.3.0 version (#41008) 2023-11-13 10:09:39 +01:00
David Gardner
da4f2776d2 sundials: add license directive (#41028) 2023-11-13 10:08:28 +01:00
Adam J. Stewart
e2f274a634 PyTorch: allow +openmp on macOS (#41025) 2023-11-13 10:07:18 +01:00
Christian Glusa
15dcd3c65c py-pynucleus: Add variant, modify dependencies (#41006) develop-2023-11-12 2023-11-11 16:24:12 -06:00
Matthew Archer
49c2894def update to latest version (#40905) 2023-11-11 16:16:45 -06:00
Stephen Hudson
1ae37f6720 libEnsemble: add v1.1.0 (#40969) 2023-11-11 16:15:43 -06:00
Adrien Berchet
15f6368c7f Add geomdl package (#40933) 2023-11-11 15:55:08 -06:00
Terry Cojean
57b63228ce Ginkgo: 1.7.0, change compatibility, update option oneapi->sycl (#40874)
Signed-off-by: Terry Cojean <terry.cojean@kit.edu>
2023-11-11 09:00:52 -06:00
Greg Becker
13abfb7013 spack deconcretize command (#38803)
We have two ways to concretize now:
* `spack concretize` concretizes only the root specs that are not concrete in the environment.
* `spack concretize -f` eliminates all cached concretization data and reconcretizes the *entire* environment.

This PR adds `spack deconcretize`, which eliminates cached concretization data for a spec.  This allows
users greater control over what is preserved from their `spack.lock` file and what is reused when not
using `spack concretize -f`.  If you want to update a spec installed in your environment, you can call
`spack deconcretize` on it, and that spec and any relevant dependents will be removed from the lock file.

`spack concretize` has two options:
* `--root`: limits deconcretized specs to *specific* roots in the environment. You can use this to
  deconcretize exactly one root in a `unify: false` environment.  i.e., if `foo` root is a dependent
  of `bar`, both roots, `spack deconcretize bar` will *not* deconcretize `foo`.
* `--all`: deconcretize *all* specs that match the input spec. By default `spack deconcretize`
  will complain about multiple matches, like `spack uninstall`.
2023-11-10 14:55:35 -08:00
Nils Lehmann
b41fc1ec79 new release (#41010) 2023-11-10 11:52:59 -07:00
Henri Menke
124e41da23 libpspio 0.3.0 (#40953)
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-10 09:48:50 -08:00
Massimiliano Culpo
f6039d1d45 builtin.repo: fix ^mkl pattern in minor packages (#41003)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-10 17:18:24 +01:00
Victoria Cherkas
8871bd5ba5 fdb: add dependency on eckit later release (#40737)
* depends_on("eckit@1.24.4:", when="@5.11.22:")

* Update var/spack/repos/builtin/packages/fdb/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

* make latest tagged release the default install

* revert f258f46660

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
2023-11-10 07:54:25 -08:00
Cody Balos
efe85755d8 alquimia: apply patch for iso_c_binding to latest version (#40989) 2023-11-10 08:31:38 -06:00
Cody Balos
7aaa17856d pflotran: tweak for building with xsdk rocm/hip (#40990) 2023-11-10 08:30:35 -06:00
Massimiliano Culpo
fbf02b561a gromacs et al: fix ^mkl pattern (#41002)
The ^mkl pattern was used to refer to three packages
even though none of software using it was depending
on "mkl".

This pattern, which follows Hyrum's law, is now being
removed in favor of a more explicit one.

In this PR gromacs, abinit, lammps, and quantum-espresso
are modified.

Intel packages are also modified to provide "lapack"
and "blas" together.
2023-11-10 13:56:04 +00:00