Commit Graph

17261 Commits

Author SHA1 Message Date
Olli Lupton
ae9adba900
Add ccache v4.4.1. (#25957) 2021-09-17 13:37:58 -06:00
Cyrus Harrison
bd415ec841
improve ascent package to use stages and cmake base (#25720)
* improve ascent package to use stages and cmake base

* style

* more style
2021-09-17 10:37:16 -07:00
iarspider
7e7de25aba
fmt: add variant for shared library (#25969) 2021-09-17 08:04:55 -06:00
eugeneswalker
730720d50a
variant build: openmp_ref should be openmp (#26006) 2021-09-17 06:38:00 -06:00
iarspider
8e486c1e57
gosam: new version 2.1.1 (#25985) 2021-09-17 06:10:41 -06:00
Kurt Sansom
be8e52fbbe
GCC: patch for gcc 10.3.0 ICE when using nvcc (#25980)
* fix: patch for gcc 10.3.0 ICE when using nvcc

* fix: use URL reference instead

* fix: add missing sha256sum
2021-09-16 18:43:56 -06:00
Edward Hartnett
f8fae997d3
added package.py for GPTL (#25993) 2021-09-16 17:11:05 -06:00
Miroslav Stoyanov
e027cecff2
workaround a cmake/rocm bug in heffte (#25948) 2021-09-16 13:26:07 -06:00
Alec Scott
bb29c5d674
Add v7.0.2 to Admixtools (#25997) 2021-09-16 12:08:15 -06:00
G-Ragghianti
c4e26ac7c8
Fix for problem with cmake@3.21 (#25989) 2021-09-16 11:52:59 -06:00
AMD Toolchain Support
cf81046bb1
New package: ROMS (#25990)
Co-authored-by: Mohan Babu <mohbabul@amd.com>
2021-09-16 10:34:45 -07:00
Harmen Stoppels
5b211c90f5
Bump sirius 7.2.x (#25939) 2021-09-16 15:00:58 +02:00
Mikael Simberg
b09ad2cc8c
Update HPX package (#25775)
* Add support for C++20 to HPX package

* Enable unity builds in HPX package when available

* Add support for HIP/ROCm to HPX package

* Rearrange and update required versions for HPX package

* Add C++20 option to asio package
2021-09-16 13:24:17 +02:00
jacorvar
c0122242ee
bedops: Fix checksum for 2.4.40 (#25958)
Fixes #25951
2021-09-15 16:17:40 -07:00
Adam J. Stewart
0015f700b7
py-pybind11: use PythonPackage install method (#25650) 2021-09-15 11:57:33 -07:00
Ben Corbett
75497537a4
Added LvArray 0.2.2 (#25950) 2021-09-15 01:44:07 -06:00
Massimiliano Culpo
c52426ea7a
Make clingo the default solver (#25502)
Modifications:
- [x] Change `defaults/config.yaml`
- [x] Add a fix for bootstrapping patchelf from sources if `compilers.yaml` is empty
- [x] Make `SPACK_TEST_SOLVER=clingo` the default for unit-tests
- [x] Fix package failures in the e4s pipeline

Caveats:
1. CentOS 6 still uses the original concretizer as it can't connect to the buildcache due to issues with `ssl` (bootstrapping from sources requires a C++14 capable compiler)
1. I had to update the image tag for GitlabCI in e699f14.  
1. libtool v2.4.2 has been deprecated and other packages received some update
2021-09-14 22:44:16 -07:00
Vanessasaurus
ef5ad4eb34
Adding ability to compare git references to spack install (#24639)
This will allow a user to (from anywhere a Spec is parsed including both name and version) refer to a git commit in lieu of 
a package version, and be able to make comparisons with releases in the history based on commits (or with other commits). We do this by way of:

 - Adding a property, is_commit, to a version, meaning I can always check if a version is a commit and then change some action.
 - Adding an attribute to the Version object which can lookup commits from a git repo and find the last known version before that commit, and the distance
 - Construct new Version comparators, which are tuples. For normal versions, they are unchanged. For commits with a previous version x.y.z, d commits away, the comparator is (x, y, z, '', d). For commits with no previous version, the comparator is ('', d) where d is the distance from the first commit in the repo.
 - Metadata on git commits is cached in the misc_cache, for quick lookup later.
 - Git repos are cached as bare repos in `~/.spack/git_repos`
 - In both caches, git repo urls are turned into file paths within the cache

If a commit cannot be found in the cached git repo, we fetch from the repo. If a commit is found in the cached metadata, we do not recompare to newly downloaded tags (assuming repo structure does not change). The cached metadata may be thrown out by using the `spack clean -m` option if you know the repo structure has changed in a way that invalidates existing entries. Future work will include automatic updates.

# Finding previous versions
Spack will search the repo for any tags that match the string of a version given by the `version` directive. Spack will also search for any tags that match `v + string` for any version string. Beyond that, Spack will search for tags that match a SEMVER regex (i.e., tags of the form x.y.z) and interpret those tags as valid versions as well. Future work will increase the breadth of tags understood by Spack

For each tag, Spack queries git to determine whether the tag is an ancestor of the commit in question or not. Spack then sorts the tags that are ancestors of the commit by commit-distance in the repo, and takes the nearest ancestor. The version represented by that tag is listed as the previous version for the commit.

Not all commits will find a previous version, depending on the package workflow. Future work may enable more tangential relationships between commits and versions to be discovered, but many commits in real world git repos require human knowledge to associate with a most recent previous version. Future work will also allow packages to specify commit/tag/version relationships manually for such situations.

# Version comparisons.
The empty string is a valid component of a Spack version tuple, and is in fact the lowest-valued component. It cannot be generated as part of any valid version. These two characteristics make it perfect for delineating previous versions from distances. For any version x.y.z, (x, y, z, '', _) will be less than any "real" version beginning x.y.z. This ensures that no distance from a release will cause the commit to be interpreted as "greater than" a version which is not an ancestor of it.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-09-14 22:12:34 -07:00
David Beckingsale
c3bc3e61aa
gcc: apply backported fixes to v4.9.3 (#25945) 2021-09-15 07:10:04 +02:00
Satish Balay
148071ac8a
dealii: add version 9.3.1 (#25915) 2021-09-14 15:26:08 -06:00
Weston Ortiz
56c375743a
Add missing mumps TPL commands (#25940) 2021-09-14 20:26:37 +01:00
Harmen Stoppels
fc96c49b0b
Add py-pot with patch (#25712) 2021-09-14 15:55:02 +02:00
Harmen Stoppels
ce790a89f2
reframe: set PYTHONPATH at runtime (#25842) 2021-09-14 15:54:14 +02:00
Valentin Volkl
1b633e1ca4
ocaml: add patch for clang@11: (#25886) 2021-09-14 09:34:57 +02:00
Ben Darwin
2ac9dc76c4
dcmtk: add v3.6.4, v3.6.5, v3.6.6 (#25923) 2021-09-14 09:22:48 +02:00
Weston Ortiz
d7c5aa46fe
trilinos: variant for libx11 (#25823) 2021-09-14 08:53:53 +02:00
Edward Hartnett
f6eb16982a
added new version of parallelio library (#25916) 2021-09-13 18:22:54 -06:00
David Beckingsale
be1c4bc563
Rename camp 'main' version (#25918) 2021-09-13 16:55:55 -06:00
Timothy Brown
998de97091
ESMF, NEMSIO and UFS-UTILS changes. (#25846)
* ESMF and NEMSIO changes.

- Updating ESMF to set the COMM correctly when using Intel oneapi.
- Explicitly setting the CMake MPI Fortran compiler for NEMSIO.

* Update UFS utils CMake to use MPI_<lang>_COMPILER.
2021-09-13 16:13:43 -06:00
Satish Balay
9956841331
petsc, petsc4py: add version 3.15.4 (#25912) 2021-09-13 11:49:36 -07:00
Massimiliano Culpo
e9f1cfdaaf
Avoid hidden circular dependencies in spack.architecture (#25873)
* Refactor platform etc. to avoid circular dependencies

All the base classes in spack.architecture have been
moved to the corresponding specialized subpackages,
e.g. Platform is now defined within spack.platforms.

This resolves a circular dependency where spack.architecture
was both:
- Defining the base classes for spack.platforms, etc.
- Collecting derived classes from spack.platforms, etc.
Now it dopes only the latter.

* Move a few platform related functions to "spack.platforms"

* Removed spack.architecture.sys_type()

* Fixup for docs

* Rename Python modules according to review
2021-09-13 11:04:42 -07:00
Chuck Atkins
c392454125
Disable dvsdk variants (#25889)
* dvsdk: Turn off variants by default

This allows an install to more easily be explicit about which pieces to
turn on as more variants are added

* dvsdk: effectively disable the broken variants
2021-09-13 11:33:55 -06:00
Seth R. Johnson
fca81c2ac8
kokkos: fail gracefully on missing microarch (#25910)
Fall back on known parent microarches (as determined by spack's built-in
archspec knowledge). Clsoes spack/spack#25907 .
2021-09-13 11:07:14 -06:00
Tamara Dahlgren
bafd84e191
Switch http to https where latter exists (#25672)
* Switch http to https where latter exists
* Hopefully restore original permissions
* Add URL updates after include the -L curl option
* Manual corrections to select URL format strings
2021-09-13 09:21:35 -07:00
Desmond Orton
1e08f31e16
New Version: mothur@1.46.1 (#25850) 2021-09-13 10:20:22 -06:00
Seth R. Johnson
1da7839898
trilinos: add conflicts for fortran (#25911) 2021-09-13 16:51:38 +02:00
Harmen Stoppels
a4a22a6926
Add a master branch for gnuconfig (#25866) 2021-09-13 14:17:32 +02:00
Nic McDonald
ceb94bd6ae
Log4cxx add v0.12.0, convert to CMakePackage (#25875) 2021-09-13 05:17:08 -06:00
Tim Gymnich
b745e208a3
ravel: fix missing header file (#25906)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-09-13 04:49:42 -06:00
Harmen Stoppels
6a8383b2a7
Make sure perl doesn't run into recompile with fPIC linker errors (#25834) 2021-09-13 11:29:15 +02:00
Kelly (KT) Thompson
6210e694e1
draco: add v7.11.0 (#24631) 2021-09-13 11:16:57 +02:00
Adam J. Stewart
2f889b045c
py-kornia: add new package (#25844) 2021-09-13 11:10:19 +02:00
Daniel Arndt
bc3b90f6ac
Add SYCL build option to ArborX (#25736) 2021-09-13 11:09:51 +02:00
Harmen Stoppels
1f323d296d
py-glmnet: new package (#25711) 2021-09-13 11:07:59 +02:00
Mikael Simberg
819cd41ee4
hpx, kokkos: add consistent variants for C++ std (#25535)
* Add cuda_constexpr variant to Kokkos package
* Don't require nvcc_wrapper in Kokkos package when using Cray compiler
2021-09-13 10:43:20 +02:00
Axel Huebl
c0069210e2
HiPACE: Update openPMD dep, add v21.09 (#25698) 2021-09-13 10:28:08 +02:00
Glenn Johnson
b7e61a4b75
Tell gtk-doc where the XML catalog is (#25569)
* Tell gtk-doc where the XML catalog is

The gtk-doc configure script has an option for specifying the path to
the XML catalog. If this is not set the configure script will search
a defined set of directories for a catalog file and will set
`with_xml_catalog` based on that. Only if no system catalog is found will
the XML_CATALOG_FILES be looked at. In order to make sure that the spack
provided catalog is used, pass the `--with-xml-catalog` option.

* Use the property from docbook-xml
2021-09-13 09:57:04 +02:00
Mickaël Schoentgen
59832fb0ac
httpie: add v2.5.0 (#25888) 2021-09-13 09:41:02 +02:00
gpotter2
4573741baa
nmap: overhaul of the package recipe (#25656) 2021-09-13 08:24:02 +02:00
Xavier Delaruelle
e0d8f67f34
environment-modules: add version 5.0.0 (#25904)
Adapt configure arguments to only keep useful ones for this new major
release version.
2021-09-13 07:58:40 +02:00