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Author SHA1 Message Date
Sreenivasa Murthy Kolam
b2d3d35528 Add git repo path for rocm packages (#23270) 2021-04-27 11:38:14 -07:00
Zack Galbreath
295377b2b4 Don't report configure errors to CDash for successful packages (#23286) 
Convert configure errors detected by our log scraper into warnings when
the package being installed reports that it was successful.
 2021-04-27 12:20:32 -06:00
Valentin Volkl
07e50c1732 prmon: add version 2.2.0 (#23207) 
Switched to .zip source archives to avoid problems with spack checksum finding binary assets when excluding versions.
 2021-04-27 10:56:18 -07:00
wspear
303e506f2b Add +plugins to binutils dependency (#23272) 
Tau will build but instrumented applications will fail to link with tau if it is built with a binutils that does not include the plugins variant.
 2021-04-27 10:36:17 -07:00
eugeneswalker
4179c8bd72 kvtree 1.1.1: updated checksum (#23262) 2021-04-27 09:34:24 -07:00
darmac
4f53975a2a Add new package: py-aiodns (#22138) 2021-04-27 07:16:39 -05:00
Tim Haines
cad06a15e0 Dyninst: add elfutils versioning (#19648) 2021-04-27 07:15:37 -05:00
Rémi Lacroix
42af3c16bf GLM: Add version 0.9.9.8. (#22467) 
The CMake install target was removed in version 0.9.9.6 so update the package accordingly.
 2021-04-26 16:58:12 -07:00
Jen Herting
0a6227870c New package: r-assertive-models (#23266) 2021-04-26 16:46:33 -06:00
Jen Herting
934d845806 New package: r-assertive-reflection (#23267) 2021-04-26 17:45:46 -05:00
Tim Haines
c23ffd89ff Dyninst: Add dependencies for v11.0.0 (#23121) 
Also update the mpileaks unit test to avoid a conflict on CentOS 6
where Dyninst >=11.0.0 no longer builds due to a compiler version
conflict.
 2021-04-26 13:53:53 -07:00
Drew Whitehouse
45b4dcb9ed add a package libcxxwrap-julia (#23076) 2021-04-26 14:04:11 -06:00
QuellynSnead
b7c4bfb2a7 hypre: Add a variant for unified memory support (#23258) 
Enabling unified memory requires cuda to be enabled as well.
 2021-04-26 12:55:37 -07:00
Chuck Atkins
7317b04318 ci: Remove leftover duplicate gitlab yaml (#23248) 2021-04-26 16:42:15 +00:00
Adam J. Stewart
418c78fdc9 py-scipy: add v1.6.3 (#23253) 2021-04-26 16:06:57 +00:00
Chuck Atkins
e3054c3318 ci: Generalize the GitLab CI pipeline yaml (#23225) 
* ci: Generalize the GitLab CI pipeline yaml

* ci: Rename cloud_e4s_pipelines to the more general cloud_pipelines
 2021-04-26 08:13:16 -06:00
Glenn Johnson
2473e0cc82 r-blavaan: new package (#23232) 2021-04-26 10:03:52 +02:00
miheer vaidya
d21339bae5 fasd: new package (#23238) 2021-04-26 02:02:20 -06:00
Glenn Johnson
7952a802ed r-brms: new package (#23233) 2021-04-26 10:01:47 +02:00
kurtsansom
4b62344163 p4est: add v2.3.1 (#23235) 2021-04-26 09:59:49 +02:00
Robert Mijakovic
afa3ddedba openmpi: add v4.1.1 (#23242) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-04-26 09:39:16 +02:00
Valentin Volkl
70955dbce3 py-hepunits: add v2.1.0 (#23244) 2021-04-26 09:37:26 +02:00
Valentin Volkl
40d8723d6d py-awkward: add v1.2.2, py-uproot: add v4.0.7 (#23245) 2021-04-26 09:37:07 +02:00
Massimiliano Culpo
d0eca2c639 clingo: add v5.5.0, v5.4.1 (#23239) 
fixes #23236

Version 5.5.0 depends on Python 3.6 or later
and CFFI
 2021-04-25 21:28:30 -07:00
Julius Plehn
0e43f52991 FLEXI: Updates cmake options according to recent changes (#23042) 
* fixes cmake options

* adds several optional tools

* use tag & consistent names
 2021-04-25 23:26:11 +02:00
Matthieu Dorier
769e549cd9 argobots: changed 'no' into 'none' for variant (#23171) 2021-04-23 14:47:42 -07:00
Glenn Johnson
5809ee6d26 New package: r-champ (#23221) 2021-04-23 14:45:42 -07:00
Andrew W Elble
2b2a26022b gcc package: fix build with +nvptx (#23165) 
backport of 383400a6078d upstream to allow for cuda@11:
 2021-04-23 14:45:18 -07:00
Glenn Johnson
94ef4e9eae New package: r-nonnest2 (#23222) 2021-04-23 14:29:52 -07:00
Glenn Johnson
e0c82fcf82 New package: r-shinystan (#23223) 2021-04-23 14:29:06 -07:00
Glenn Johnson
a5db2a7403 r-renv: new package (#23067) 2021-04-23 20:26:51 +00:00
Harmen Stoppels
fef05621a7 Bootstrap with -O3 in cmake (#23147) 2021-04-23 11:10:09 -06:00
romerojosh
ce664f6f5f Add NCCL 2.8.4 and 2.9.6. (#23219) 2021-04-23 16:57:06 +00:00
romerojosh
037e8deecb Add cuDNN 8.2.0 (#23214) 2021-04-23 16:41:43 +00:00
Rémi Lacroix
44136223f7 MUMPS: allow for more optimized builds (#23161) 
* MUMPS: Use GEMMT BLAS extension when possible.

This should improve the performance and is recommanded by the developers.

* MUMPS: Add a new "openmp" variant.

* MUMPS: Add a "blr_mt" variant.

This improves performance when using OpenMP but might not be compatible with all multithreaded BLAS.
 2021-04-23 18:19:15 +02:00
Miroslav Stoyanov
2c9068ead8 tasmanian: add v7.5, improved cuda and rocm support (#23148) 2021-04-23 16:48:08 +02:00
David Hadley
2f9bfd7e09 ROOT: fix pyroot build failure in v6.20.0 (#23038) 2021-04-23 16:46:27 +02:00
Andrew W Elble
c575b1ce9b openmm: add v7.5.0 (#23037) 2021-04-23 16:44:57 +02:00
Glenn Johnson
32368c7f46 r-rjava: set JAVAH environment variable (#23055) 
Set the path to javah via the JAVAH environment variable. If it is
a version of java that does not have javah it will fall back to `javac
-h`. Without specifying this the build could pick up a javah from the
system.
 2021-04-23 16:40:32 +02:00
Glenn Johnson
f246f6701a r-runjags: new package (#23058) 2021-04-23 16:39:44 +02:00
Glenn Johnson
675de93b32 r-lavaan: new package (#23138) 2021-04-23 08:39:25 -06:00
Glenn Johnson
7c6692b0cb r-colourpicker: new package (#23136) 2021-04-23 16:36:12 +02:00
Glenn Johnson
a7fb70853e r-isva: new package (#23137) 2021-04-23 16:35:40 +02:00
Glenn Johnson
0c56b59877 r-dmrcate: new package (#23151) 2021-04-23 16:28:24 +02:00
Gregory Lee
bcea5e7ba4 mpa and fgfs: add v1.1.1 (#23173) 2021-04-23 16:09:26 +02:00
snehring
c3fbe0f026 gmap-gsnap: add v2021-03-08 (#23178) 2021-04-23 16:02:56 +02:00
Glenn Johnson
a276f9405c augustus: add v3.4.0 and update package (#22879) 
- add version 3.4.0
- add patch for bam2wig when version 3.4.0
- url format changed again, hopefully stable now
- added missing python dependency when version >3.3.1
- have older version compile with htslib, samtools ,bcftools
- new dependencies for version 3.4.0
    - sqlite
    - mysql-client
    - mysqlpp
    - lp-solve
    - suite-sparse
- refactored filtering code
- set python interpreter in scripts
 2021-04-23 15:56:22 +02:00
Robert Mijakovic
ce6a617706 shadow: add v4.8.1 (#23185) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-04-23 15:51:35 +02:00
Tamara Dahlgren
19b9789b45 fontconfig: resolve tarball issue fcobjshash.h (#23190) 2021-04-23 15:37:25 +02:00
George Hartzell
6d789a5835 docs: be more precise on what spack add ... does (#23204) 
This is as much a question as it is a minor fine-tuning of the docs.  I've been known to add things to an environment by editing the `spack.yaml` file directly.  When I read the previous version of this sentence, I was afraid that `spack add` was actually doing *two* things, modifying the `spack.yaml` and updating something else that defined the roots of the Environment.  A bit of experimentation suggests that editing the `spack.yaml` file is sufficient to change the roots.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-04-23 13:29:19 +00:00