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Author SHA1 Message Date
Ben Wibking
e8238fe330 Patchel shutil.copystat to avoid PermissionError on Lustre (#27247) 2023-02-20 17:28:03 +01:00
Alec Scott
e8a19aa089 Add Alluxio v2.9.1 and deprecate previous versions due to CVE (#35574) 2023-02-20 07:54:45 -08:00
Alec Scott
4a844a971a httpd: add v2.4.55 and deprecate previous versions due to CVE-2022-31813 (#35571) 2023-02-20 07:35:16 -08:00
Harmen Stoppels
5e337d907b spack ci: remove 120s db timeout since 60s is the default now (#35566) 2023-02-20 14:41:26 +01:00
Harmen Stoppels
208c9585b8 Revert "lib/spack/spack/store.py: Fix #28170 for padding relocation (#33122)" (#35077) 
This reverts commit c721aab006.
 2023-02-20 13:56:11 +01:00
Alec Scott
1ae4ca611e Add restic v0.15.1 (#35563) 2023-02-20 12:53:10 +01:00
Alec Scott
54eddb2301 Add py-python-lsp-server v1.7.1 (#35561) 2023-02-20 12:52:55 +01:00
Alec Scott
01dafb8047 Add activemq v5.17.3 and deprecate previous version due to CVE (#35573) 2023-02-20 12:49:54 +01:00
Greg Becker
6ef2c33b0e scale mpi dependency is incorrect (#35385) 2023-02-20 02:49:38 -08:00
Paul Kuberry
beddf4dcc4 xyce: add patch for pymi parameter merge and add maintainer (#35421) 
* xyce: add maintainer

* xyce: add patch for pymi parameter merge
 2023-02-20 11:37:17 +01:00
Alec Scott
e143065448 Add go v1.20.1, 1.19.6 and un-deprecate previous versions without CVEs (#35560) 2023-02-20 11:33:07 +01:00
Patrick Bridges
9d9ea07424 Fix kokkos package.py to filter spack wrappers in launch compiler and cmake configs (#35494) 
Kokkos when compiled by spack without +wrapper could potentially capture the spack compiler wrappers, resulting in cmake configs and kokkos_launch_compiler trying to run the spack compiler wrapper after installation.
 2023-02-20 01:23:37 -08:00
elenimath
c769582709 Pass tests argument to solver method when concretizing together (#35290) 
to make the workaround for #29447 work with `concretizer:unify:true` option
 2023-02-20 10:21:24 +01:00
Sebastian Ehlert
1958c2f986 Update xtb 6.6.0 (#35436) 2023-02-20 10:17:32 +01:00
Rocco Meli
3016da79fe Add GNINA and related packages (#35439) 2023-02-20 10:14:00 +01:00
Adam J. Stewart
0500a3cec0 py-torchbenchmark: add new package (#35443) 2023-02-20 10:12:20 +01:00
Emil Briggs
313797e3d4 Update for v5.0.4 release. (#35511) 2023-02-20 09:52:38 +01:00
Wouter Deconinck
ae189cfab8 geant4: new version 11.1.1 (#35528) 
Bugfix release only. No changes in build system.
 2023-02-20 09:47:13 +01:00
Wouter Deconinck
7c09ab174b acts: new versions 23.1.0, 23.2.0, 23.2.1 (#35540) 
* acts: new versions 23.1.0, 23.2.0, 23.2.1

- https://github.com/acts-project/acts/compare/v23.0.0...v23.1.0: no changes needed to package.py
- https://github.com/acts-project/acts/compare/v23.1.0...v23.2.0: no changes needed to package.py
- https://github.com/acts-project/acts/compare/v23.2.0...v23.2.1: no changes needed to package.py

* actsvg: new versions 0.4.27, 0.4.28 (and updated list_url)

* acts: depends_on actsvg@0.4.28: when acts@23.2: +svg

* autodiff: new version 0.6.5-0.6.12 (and list_url fix)

* vecmem: new versions 0.13.0-0.22.0 (and list_url fix)
 2023-02-20 09:42:58 +01:00
Wouter Deconinck
c14b6b80cc clhep: new versions 2.4.6.2, 2.4.6.3, 2.4.6.4 (#35542) 
Mostly minor changes in random and support for c++20. No build system changes needed.

Ref: https://gitlab.cern.ch/CLHEP/CLHEP/-/compare/CLHEP_2_4_6_2...CLHEP_2_4_6_4
 2023-02-20 09:41:43 +01:00
Wouter Deconinck
899d2708a3 lhapdf: new versions 6.5.2, 6.5.3 (#35543) 
https://gitlab.com/hepcedar/lhapdf/-/compare/lhapdf-6.5.3...lhapdf-6.5.1: bugfixes only
 2023-02-20 09:41:26 +01:00
Wouter Deconinck
5ccc2e1a8e whizard: new version 3.1.0 (#35550) 
https://gitlab.tp.nt.uni-siegen.de/whizard/public/-/compare/v3.0.3...v3.1.0, no changes to package.py needed.
 2023-02-20 09:40:23 +01:00
Adam J. Stewart
7c01d3ba35 Fix broken links in docs (#35582) 2023-02-20 09:21:18 +01:00
Thomas Bouvier
81f11d5562 py-pyarrow: fix build environment (#35567) 
* `py-pyarrow`: fix build environment

* Use `satisfies()` for specs
 2023-02-19 12:48:14 -08:00
Adam J. Stewart
747f032ec2 pandoc: disable texlive variant by default (#35569) 2023-02-19 13:22:51 +01:00
Alec Scott
97ea182ee0 hugo: add v0.110.0, v0.108.0, v0.107.0 (#35562) 2023-02-19 00:19:11 +01:00
Harmen Stoppels
011c28a538 openblas: fix prereqs / make race (#35395) 
Fix a race in the makefile where the shared lib was built before the
object files were available.

See https://github.com/xianyi/OpenBLAS/issues/3899
 2023-02-18 12:27:34 -08:00
Harmen Stoppels
86320eb569 Improve error handling in buildcache downloads (#35568) 
The checksum exception was not detailed enough and not reraised when using cache only, resulting in useless error messages.

Now it dumps the file path, expected
hash, computed hash, and the downloaded file summary.
 2023-02-18 19:22:48 +01:00
Adam J. Stewart
c42a4ec1ec Ignore black reformat in git blame (#35544) 2023-02-18 01:03:50 -08:00
Harmen Stoppels
fb644de086 clang/apple-clang correct c/c++ standard flags (#35062) 2023-02-17 23:18:01 +01:00
Sinan
352d56d6b0 package_qgis_add_v328 (#35500) 
* package_qgis_add_v328

* restore long term release

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2023-02-17 14:58:47 -06:00
G-Ragghianti
b711d5a6a4 Moving official repo and download locations for slate, blaspp, and lapackpp (#35521) 2023-02-17 09:58:48 -08:00
Adam J. Stewart
983c68cc30 py-pyinstrument: add v4.4.0 (#35525) 2023-02-17 04:35:34 -08:00
Wouter Deconinck
7d8d538a71 gaudi: add v36.10 (#35527) 
Bugfixes only, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r9...v36r10
 2023-02-17 04:27:24 -08:00
Jim Edwards
fa3ced5242 add PIC flag in mpi-serial build (#35524) 2023-02-17 04:27:11 -08:00
Annop Wongwathanarat
73fcda19d2 armcomputelibrary: new package (#35515) 2023-02-17 04:14:23 -08:00
Sebastian Ehlert
65ee062bf6 Fix build for scine-xtb (#35386) 2023-02-17 04:14:08 -08:00
John W. Parent
573f7bf4cd Windows: enforce carriage return for .bat files (#35514) 
Batch scripts in general will not function without carriage return line
endings on Windows. We rely on these scripts to support cmd, so we
should not allow these scripts to be converted to lf.

Note: Windows 11 supports lf line endings due to the use of Windows
Terminal. Once support for Windows 10 is dropped, this change can be
reverted.
 2023-02-17 04:01:25 -08:00
H. Joe Lee
9f3f4b38e8 fio: add a new version (#35522) 
The latest is 3.33.
 2023-02-17 04:01:18 -08:00
Harmen Stoppels
476a29e1b6 Increase db timeout 3s -> 60s (#35517) 
When running many concurrent spack install processes that need to write
to the db, Spack regularly times out. This is because writing to the DB
after another process has written to it requires deserialization of the
db, mutating it in memory, and serializing it again, which takes some
time. On top of that, I believe there's a 1 second retry when a write
lock cannot be obtained, so I think this means only 3 processes can
really write to the DB at the same time before timing out.
 2023-02-17 08:42:41 +01:00
Adam J. Stewart
603569e321 Style: black 23, skip magic trailing comma (#35351) 
* Style: black 23, skip magic trailing commas

* isort should use same line length as black

* Fix unused import

* Update version of black used in CI

* Update new packages

* Update new packages
 2023-02-16 23:06:12 -06:00
Teo
b935809948 Halide: new variants and bug fixes (#35495) 
* Update package.py

Initial new stuff

* Update package.py

* Update package.py

* Update package.py

* fix targets

* non-llvm backends

* ooops

* fix style

* Somehow that was not caught?

Somehow that was not caught?

* style

* Last fix

make capitalization consistent with Halide not LLVM...
 2023-02-16 22:58:54 -06:00
Erik Heeren
b278a02406 py-pynrrd: new package (#35505) 2023-02-16 22:52:52 -06:00
Erik Heeren
9ff64b1627 py-cmake-format: new version, new variants (#35485) 
* py-cmake-format: new version, new variants

* Update var/spack/repos/builtin/packages/py-cmake-format/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-02-16 22:51:40 -06:00
genric
5fc5ef8c58 py-luigi: add v3.2.0 (#35507) 2023-02-16 22:51:04 -06:00
Christopher Christofi
946816d787 py-cufflinks: new package version with 0.17.3 (#35427) 
* py-cufflinks: new package version with 0.17.3

* Update var/spack/repos/builtin/packages/py-cufflinks/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-02-16 22:43:35 -06:00
Adam J. Stewart
03fb5c6aa9 py-fiona: python is a link dep (#35516) 2023-02-16 17:56:12 -08:00
AMD Toolchain Support
68f82357c8 added support zen4 support for gromacs (#35503) 
Co-authored-by: Umashankar Sivakumar <Umashankar.Sivakumar@amd.com>
 2023-02-16 16:38:58 -08:00
Andrew-Dunning-NNL
f073a9d589 dakota: run acceptance tests (#29654) 
* dakota: run acceptance tests
* dakota: updated style guide
 2023-02-16 16:28:21 -08:00
Massimiliano Culpo
d17cc42a48 fuse-overlayfs: add v1.10 (#35512) 2023-02-16 16:23:06 -08:00