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Author SHA1 Message Date
Rocco Meli
b11e370888 namd 3.0 (#45096) 2024-07-09 09:54:29 -06:00
Massimiliano Culpo
54ee7d4165 Remove the "install_mockery_mutable_config" fixture (#45129) 
This fixture was introduced in #16429, and made
redundant in #39024
 2024-07-09 11:23:49 +02:00
Massimiliano Culpo
15efcbe042 Fix conflicting use of config and mutable_config fixtures in unit tests (#45106) 
and add a fixture to detect use of conflicting fixtures
 2024-07-09 09:51:04 +02:00
Alec Scott
7c5fbee327 Improve organization of CI workflow scripts and pip requirements (#45037) 2024-07-09 04:46:09 +02:00
Satish Balay
b19c4cdcf6 petsc, py-petsc4py: add v3.21.3 (#44954) 
* petsc, py-petsc4py: add v3.21.3
* py-petsc4py: requires cython v3 since v3.20
 2024-07-08 15:40:36 -07:00
Harmen Stoppels
3212cf86f4 environments.rst: go from simple to advanced (#45004) 
* environments.rst: go from simple to advanced
* improvements
* notes about activation
 2024-07-08 15:36:18 -07:00
Auriane R
fbceae7773 [py-datasets] Add py-datasets version 2.20.0 (#44903) 
* Add py-datasets version 2.20.0

* Add dependency requirements for version 2.20 + refactor

* Add missing tqdm and requests versions and to install latest py-datasets

* Add missing python requirements for 2.8.0 and 2.20.0
 2024-07-08 15:21:14 -07:00
George Young
b921d1a920 gtfsort: new package (#45062) 
* gtfsort: new rust package @0.2.2

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2024-07-08 15:07:22 -07:00
Robert Cohn
8128b549a5 [intel-oneapi-dpct] correct 2024.2.0 hash (#45100) 2024-07-08 13:46:55 -07:00
Alex Richert
7405d95035 ip2: deprecate package, fix sp dependency (#45064) 2024-07-08 22:18:15 +02:00
Harmen Stoppels
a04b12a3ef spec.py: print right deptype in tree (#45091) 
Fix a bug where Spec.tree with cover=nodes reduces deptypes from all
in-edges, including from nodes not reachable from the root, which almost
always happens for concrete specs
 2024-07-08 18:25:57 +02:00
Massimiliano Culpo
cbf8f2326d pinentry: add v1.3.1 (#45073) 2024-07-08 08:58:14 -07:00
Harmen Stoppels
297874bfed spec.py: fix __getitem__ looking outside of dag (#45090) 
`Spec.__getitem__` queries dependent edges, which almost always point to
nodes outside the sub-dag considered. It should only ever look at edges
being traversed.
 2024-07-08 14:53:51 +02:00
Massimiliano Culpo
74398d74ac Add type-hints to RepoPath (#45068) 
* Also, fix a bug with use_repositories + import spack.pkg
 2024-07-08 11:48:39 +02:00
afzpatel
cef9c36183 kripke: update version to 1.2.7 (#44791) 
* initial commit to update kripke to 1.2.7
* fix style errors
 2024-07-08 02:16:24 -06:00
Wouter Deconinck
5e7430975a zlib-ng: add v2.1.7, v2.2.1 (#45076) 2024-07-08 09:40:44 +02:00
Adam J. Stewart
1456f6dba1 py-scikit-learn: add v1.5.1 (#45016) 2024-07-08 09:29:11 +02:00
Hariharan Devarajan
daf74a60ca cpp-logger: add v0.0.4 (#45033) 2024-07-08 09:28:33 +02:00
Niclas Jansson
87df95c097 neko: add v0.8.0 (#45086) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-07-08 01:26:44 -06:00
Richard Berger
9b49576875 legion: bugfix for +cuda+cuda_unsupported_compiler (#45036) 
When using a newer Clang for Kokkos than supported by a given CUDA version, the
CUDA compiler detection in Legion's CMake still needs to be passed
CMAKE_CUDA_FLAGS to pass the compiler check.
 2024-07-08 09:25:09 +02:00
Hariharan Devarajan
065cbf79fc gotcha: add v1.0.7 (#45043) 2024-07-08 09:22:19 +02:00
Rocco Meli
09b89e87a4 DLA-Future-Fortran: add v0.2.0 (#45055) 2024-07-08 09:16:31 +02:00
Adam J. Stewart
ddab6156a6 py-numpy: add v2.0.0 (#44735) 2024-07-08 09:14:50 +02:00
Harry Sharma
10cdfff0d1 feat: add diamond@2.1.[8,9] (#45047) 2024-07-08 09:05:32 +02:00
Adam J. Stewart
3328416976 py-matplotlib: add v3.9.1 (#45060) 2024-07-08 08:59:10 +02:00
Wouter Deconinck
094a621f3c acts: add v35.1.0, v35.2.0 (#44963) 
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2024-07-08 08:46:57 +02:00
Wouter Deconinck
87ce5d8ccb py-webcolors: add v24.6.0 (#45075) 2024-07-08 08:45:15 +02:00
Wouter Deconinck
bcdc92e25f vc: add v1.4.5 (#45077) 2024-07-08 08:43:16 +02:00
Wouter Deconinck
a323fab135 util-linux{-uuid}: add v2.40.2 (#45079) 
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2024-07-08 08:40:14 +02:00
Wouter Deconinck
d42031b075 assimp: add v5.4.2 (#45081) 
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2024-07-08 08:33:06 +02:00
Jonathon Anderson
efbb18aa25 hpctoolkit: minor fixes for build failures (#45070) 2024-07-08 08:22:11 +02:00
Harmen Stoppels
8a430f89b3 spack -C <env>: use env config w/o activation (#45046) 
Precedence:

1. Named environment
2. Anonymous environment
3. Generic directory
 2024-07-06 22:02:25 -07:00
dependabot[bot]
aeaa922eef build(deps): bump actions/upload-artifact from 4.3.3 to 4.3.4 (#45069) 
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4.3.3 to 4.3.4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](65462800fd...0b2256b8c0)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
develop-2024-07-07 		2024-07-06 08:20:30 +02:00
Hadrien G
a6d5a34be3 Remove myself from maintainer lists (#45071) 2024-07-06 08:17:31 +02:00
Todd Gamblin
ba79542f3c spack gc: remove debug print statement (#45067) 
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
 2024-07-05 22:36:45 +02:00
Auriane R
dc10c8a1ed [py-transformers] Add newer versions (#45022) 
* Add newer versions for py-transformers

* Add dependencies needed for py-transformers latest version

* Enforce dependencies requirements for py-transformers newer versions
 2024-07-05 14:52:24 +02:00
Auriane R
5ab814505e py-flash-attn: add v2.5.6 -> main (#44894) 
* Add latest releases of py-flash-attn

* Add main branch for flash attention

* Add additional requirements
 2024-07-05 06:19:01 -06:00
Harmen Stoppels
1d8bdcfc04 config: fix class hierarchy (#45044) 
1. Avoid that `self.path` is of type `Optional[str]`
2. Simplify immutable config with a property.
 2024-07-05 12:41:13 +02:00
Massimiliano Culpo
95cf341b50 Inject dependencies in repo classes (#45053) 2024-07-05 12:00:41 +02:00
Benjamin Fovet
a134485b1b remove trailing dot in gmsh 4.13.0 shasum (#45054) 2024-07-05 10:18:11 +02:00
dependabot[bot]
d39edeb9a1 build(deps): bump docker/setup-buildx-action from 3.3.0 to 3.4.0 (#45051) 
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.3.0 to 3.4.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](d70bba72b1...4fd812986e)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-07-04 19:28:35 -05:00
dependabot[bot]
453fb27be2 build(deps): bump docker/build-push-action from 6.2.0 to 6.3.0 (#45042) 
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.2.0 to 6.3.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](15560696de...1a162644f9)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-07-04 19:28:21 -05:00
dependabot[bot]
831f04fb7d build(deps): bump docker/setup-qemu-action from 3.0.0 to 3.1.0 (#45041) 
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/docker/setup-qemu-action/releases)
- [Commits](68827325e0...5927c834f5)

---
updated-dependencies:
- dependency-name: docker/setup-qemu-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-07-04 19:28:03 -05:00
Wouter Deconinck
04044a9744 containers: rm centos7 since EOL (#45049) 2024-07-04 22:22:23 +02:00
Massimiliano Culpo
8077285a63 flux-core: remove deprecated versions (#45014) 2024-07-04 22:15:55 +02:00
Paul R. C. Kent
537926c1a7 py-pyscf: add v2.6.0, v2.6.1, v2.6.2 (#45032) 
* pyscf: add 260 261 262

* Fix max version typo
 2024-07-04 12:43:27 -05:00
Stephen Nicholas Swatman
02ff3d7b1e acts-algebra-plugins: new package (#44861) 
This commit adds the `acts-algebra-plugins` package which provides the
Acts project with linear algebra functionality.
 2024-07-04 09:51:18 -05:00
Jordan Galby
491cb278f3 spack audit packages: Fix message (#45045) 
Fix message formatting of the "virtual dependency cannot have variants" error.
 2024-07-04 14:30:30 +02:00
Harmen Stoppels
ed1ebefd8f dray: deprecate and simplify (#45015) 2024-07-04 11:43:34 +02:00
Harmen Stoppels
36d64fcbd4 iconv: require libiconv on linux (#45026) 
otherwise it is still picked up from glibc as it is external
 2024-07-04 08:20:27 +02:00