Commit Graph

17688 Commits

Author SHA1 Message Date
bernhardkaindl
4a31f0fb0f py-mock: fix depends of @:2.0.0 and bump version (#26336)
* py-mock: fix depends of `@:2.0.0` and bump version

fixes the build of `py-gsutil`, it depends on `'py-mock@:2.0.0'`.

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply the other requested changes

* Add requested change: Add the python@3.6 for newer versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 15:39:57 +00:00
Greg Sjaardema
5132cfcc63 seacas: new release and fixes for metis/parmetis (#26310)
* seacas: new release and fixes for metis/parmetis

* Update to add sha256 checksum for latest seacas release

* Updated the documentation strings with new applications

* Fixed the metis/parmetis variants and logic depending on whether mpi
  is enabled/disabled. (There is still a zoltan issue I need to fix,
  but this will at least allow seacas to be built without
  metis/parmetis or with +mpi+parmetis.  The ~mpi+metis still needs
  work elsewhere.)

* Enable cpup, slice, zellij in +applications
2021-09-29 16:53:49 +02:00
bernhardkaindl
11278dd55a py-monotonic: bump version to 1.6 (#26335)
Fixes `spack solve py-gsutil`: It depends on 'py-monotonic@1.4:'
2021-09-29 09:19:47 -05:00
Pat Riehecky
e45979d39a Added OpenJDK 16.0.2 (#26322) 2021-09-29 14:19:38 +00:00
MichaelLaufer
ed54d6c926 py-netcdf4: adds parallel IO support (#26178) 2021-09-29 08:21:16 -05:00
iarspider
634b0b25c4 Add new package: py-backports-entry-points-selectable (#26329) 2021-09-29 15:09:27 +02:00
Manuela Kuhn
ac29b70d18 py-dipy: add new package (#26331) 2021-09-29 15:05:34 +02:00
Manuela Kuhn
e01947effc py-imageio-ffmpeg: add 0.4.5, fix installation and import (#26330) 2021-09-29 14:56:16 +02:00
Manuela Kuhn
78dbac69e9 py-pyqt5-sip: add new package (#26325) 2021-09-29 14:52:29 +02:00
bernhardkaindl
80c8978691 krb5: bump version and limit depends_on('openssl') to @1 (#26332)
krb5 uses an openssl RSA API which is deprecated in OpenSSL@3.0.0
with an const/non-const mismatch.
2021-09-29 11:24:08 +00:00
Manuela Kuhn
ab6b531e10 py-argcomplete: add 1.12.3 (#26228) 2021-09-29 13:10:03 +02:00
Olli Lupton
cffa1e7f6c Add ccache 4.4.2. (#26327) 2021-09-29 09:41:28 +00:00
Axel Huebl
c5410bd333 FFTW: NEON SIMD is float-only (#26321)
Fix on Apple Mac M1 (aarch64):
```
configure: error: NEON requires single precision
```
2021-09-29 02:40:45 +00:00
Ben Darwin
c578882bb2 itk: add version 5.2.1 (#26307) 2021-09-28 18:15:42 -07:00
Greg Sjaardema
a550416a1f netcdf-c: Update for 4.8.1 and new download site (#26309)
NetCDF-4.8.1 has been released.

    As discussed in https://github.com/Unidata/netcdf-c/issues/2110
    (netcdf-c-4.8.1.tar.gz not on ftp site... #2110), the canonical
    download site for netCDF releases has been changed and the previous
    ftp site is no longer available.

    This PR updates the `url` to point to the new recommended download
    site and updates the sha256 checksums for the new tar files.
2021-09-28 17:21:28 -07:00
Gregory Lee
82d857dced qhull deprecated libqhull.so in 2020.2 (#26304) 2021-09-28 16:54:30 -07:00
Manuela Kuhn
32b5669e8d py-pytz: add 2021.1 (#26289) 2021-09-28 18:07:28 +00:00
iarspider
a2c16356a1 dire: Fix depends for new pythia version scheme (#26294)
Pythia version numbering was changed in #26255 from xyyy to x.yyy
2021-09-28 18:05:52 +02:00
Edward Hartnett
4f4984e313 wrf-io: added NOAA software maintainers, added openmp variant (#26113) 2021-09-28 08:55:09 -07:00
Tamara Dahlgren
5ace5ca7a4 Post 26211 rebase updates (#26246) 2021-09-28 08:53:59 -07:00
Manuela Kuhn
519f75b865 py-scooby: add new package (#26284) 2021-09-28 17:51:37 +02:00
Diego Alvarez
023d9e3b4c Added OpenJDK 11.0.12_7 (#26299) 2021-09-28 17:47:45 +02:00
iarspider
9810a80c6d Update nlohmann-json to 3.10.2 (#26260)
* Update nlohmann-json

* fix testsuite

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-28 08:45:34 -07:00
Harmen Stoppels
6c33047514 Squashfs is a makefilepackage (#26300) 2021-09-28 17:45:16 +02:00
bernhardkaindl
3c5a4157b0 py-anuga: add git main version to support build with python@3.5: (#26248)
* py-anuga: add git main version to support build with python@3.5:

py-anuga's main branch has been converted to Python-3 recently.

* py-triangle: use pypi, py-anuga: Fixed depends and test suite works now
2021-09-28 10:37:09 -05:00
bernhardkaindl
d00c9b47f2 py-tomopy: version bump and master, add new deps, make runtest pass (#26252)
Current py-tomopy has many features and dependencies, add them.
2021-09-28 10:33:29 -05:00
Manuela Kuhn
79808f92ae py-numba: add 0.54.0 and restrict old dependencies (#26281)
* py-numba: add 0.54.0 and restrict old dependencies

* Update var/spack/repos/builtin/packages/py-numba/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-28 10:32:44 -05:00
Manuela Kuhn
0f5c63b0c3 py-xlrd: add 2.0.1 (#26282) 2021-09-28 10:31:45 -05:00
Manuela Kuhn
b8dd8b07f9 py-appdirs: add 1.4.4 (#26298) 2021-09-28 10:26:23 -05:00
Diego Alvarez
f65a50d9f9 Update Nextflow (#26042) 2021-09-28 07:15:17 -04:00
Harmen Stoppels
4ce9c839ac Add OpenSSL 3 (#26097)
* OpenSSL 3.0.0

* Remove openssl constraint in e4s to test 3.0.0

* Restrict openssl

* Restrict openssl to @:1 in unifyfs

* Revert "Remove openssl constraint in e4s to test 3.0.0"

This reverts commit 0f0355609771764280ab1b6a523c80843a4f85d6.

* Prefer 1.x
2021-09-28 10:36:55 +02:00
bernhardkaindl
499d39f211 libp11: Fix build and add new version (#26135)
The build needs `pkgconfig` and `openssl`, `m4` is already added by `autoconf`.
Also add the current version of `libp11` to the list of versions.

Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-09-28 04:01:08 +02:00
Manuela Kuhn
cd8e85d802 py-dataclasses: add 0.8 (#26283) 2021-09-27 20:18:07 -05:00
Manuela Kuhn
c1cfbc5536 py-meshio: add 5.0.1 and 4.4.6 (#26285) 2021-09-27 20:17:22 -05:00
Manuela Kuhn
87b23cc9cd py-deprecated: add 1.2.13 and get sources from pypi (#26286) 2021-09-27 20:15:35 -05:00
Harmen Stoppels
87450f3688 Use gnuconfig package for config file replacement (#26035)
* Use gnuconfig package for config file replacement

Currently the autotools build system tries to pick up config.sub and
config.guess files from the system (in /usr/share) on arm and power.
This is introduces an implicit system dependency which we can avoid by
distributing config.guess and config.sub files in a separate package,
such as the new `gnuconfig` package which is very lightweight/text only
(unlike automake where we previously pulled these files from as a
backup). This PR adds `gnuconfig` as an unconditional build dependency
for arm and power archs.

In case the user needs a system version of config.sub and config.guess,
they are free to mark `gnuconfig` as an external package with the prefix
pointing to the directory containing the config files:

```yaml
    gnuconfig:
      externals:
      - spec: gnuconfig@master
        prefix: /tmp/tmp.ooBlkyAKdw/lol
      buildable: false
```

Apart from that, this PR gives some better instructions for users when
replacing config files goes wrong.

* Mock needs this package too now, because autotools adds a depends_on

* Add documentation

* Make patch_config_files a prop, fix the docs, add integrations tests

* Make macOS happy
2021-09-27 18:38:14 -04:00
Tamara Dahlgren
c0da0d83ff qhull: use secure github URLS instead of www.qhull.org downloads (#26211) 2021-09-27 14:50:43 -07:00
Manuela Kuhn
9b7a8f69fb py-python-picard: add new package (#26268) 2021-09-27 23:39:30 +02:00
Brian Van Essen
acc8673e1a Updated versions for cuDNN and NVSHMEM (#26272) 2021-09-27 13:54:15 -07:00
Adam J. Stewart
5c1e133d23 py-torchvision: add v0.10.1 (#26267) 2021-09-27 13:35:53 -07:00
Manuela Kuhn
1ad8c0d67d py-llvmlite: add 0.37.0 (#26278) 2021-09-27 13:33:28 -07:00
Manuela Kuhn
044e2def4f py-datalad: move datalad wtf test over from py-datalad-metalad (#26274)
* py-datalad: move datalad wtf test over from py-datalad-metalad

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-27 15:24:48 -05:00
Manuela Kuhn
44355a4f18 py-numexpr: add 2.7.3 (#26279) 2021-09-27 20:13:59 +00:00
Manuela Kuhn
6b94d7e6a3 py-tqdm: add 4.62.3 (#26277) 2021-09-27 19:55:22 +00:00
Manuela Kuhn
441c602d2d py-nilearn: add 0.8.1 (#26276) 2021-09-27 14:50:13 -05:00
Thomas Madlener
285df128a1 [openloops][vbfnlo] Fix recipes and updated dependencies (#24461)
* [vbfnlo] Add doc variant to toggle building of docs

* [openloops] Add scons to dependencies

Make sure that the build_processes does not accidentally pick up a
non-suitable scons version from the underlying system

* [openloops] Set OLPYTHON to make sure the right scons is picked

* [openloops] Fix Flake8 style complaints
2021-09-27 11:40:33 -07:00
Richarda Butler
c68536e9d3 MPICH: Add E4S testsuite stand alone test (#25634) 2021-09-27 11:36:53 -07:00
Ben Darwin
c07af15946 mrtrix3: add version 3.0.3 (#25943) 2021-09-27 11:33:42 -07:00
iarspider
e256d02963 Update highfive (#26262)
* Add new versions of highfive
* Fix CMake option name
2021-09-27 11:24:37 -07:00
Marie Houillon
87c7a7e103 New packages for openCARP (#25909)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-09-27 11:21:43 -07:00