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Author SHA1 Message Date
Harmen Stoppels
a80c0e0217 mbedtls, xz: add missing install_name fixes on macOS (#31919) 2022-08-05 08:10:42 +02:00
Nils Vu
bb9744213f spectre: add v2022.07.18 and v2022.08.01 (#31633) 2022-08-05 08:09:30 +02:00
dunatotatos
739d98801f qtltools: fix prefix in Makefile (#31929) 2022-08-05 08:03:25 +02:00
psakievich
ddc373b4e1 Fix doc format for code blocks: GitRef versions (#31937) 
Rendering was not pretty using `console` from #31914
 2022-08-05 02:01:03 +00:00
Axel Huebl
465fa7a5f6 Add: pyAMReX (#31915) 
* Add: pyAMReX

Add the new pybind11 project `pyAMReX` as `py-amrex` package.

* Fix PEP8 Style
 2022-08-04 16:57:29 -07:00
Jonathon Anderson
6cc5a657fb Add checksum for py-identify 2.5.3 (#31935) 
* Add checksum for py-identify 2.5.3

* Update package.py
 2022-08-04 16:57:48 -06:00
Jonathan R. Madsen
6970beb647 Omnitrace version 1.3.1 (#31911) 2022-08-04 15:50:16 -07:00
Olivier Cessenat
1c6830dd7a ruby-asciidoctor: adding version 2.0.17 (#31927) 2022-08-04 15:46:52 -07:00
downloadico
d458d1feb2 tassel: add version 3.0.174 (#31917) 
* tassel: add version 3.0.174
fix naming of 5.2.39 from "2017-07-22"

* changed single quotes to double quotes to appease the gods ;)

* fixed style issues
 2022-08-04 15:40:56 -07:00
Cameron Rutherford
68a1d558b1 HiOp: use ginkgo@glu_experimental with develop. (#31934) 2022-08-04 15:08:32 -07:00
eugeneswalker
25b1451ea9 openblas%cce: patch to support -hnofortran (#31931) 2022-08-04 21:12:53 +00:00
Chris Green
20de47a1e2 Move type hint to satisfy Python 3.6, 3.7 interpreters (#31932) 2022-08-04 20:48:05 +00:00
psakievich
d67ead5978 Add documentation for git refs as versions (#31914) 
* document git commit versions

Include documentation for manually specifying associated known version

* document spack develop command

Co-authorerd-by: psakievich <psakiev@sandia.gov>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-08-04 13:20:33 -07:00
psakievich
3b1401f292 Git Ref versions can be paired to defined versions in the spec (#30998) 
The current use of git ref's as a version requires a search algorithm to pick the right matching version based on the tags in the git history of the package.

This is less than ideal for the use case where users already know the specific version they want the git ref to be associated with. This PR makes a new version syntax [package]@[ref]=[version] to allow the users to specify the exact hash they wish to use.
 2022-08-04 13:17:34 -07:00
iarspider
19a8bb53f0 Add checksums for py-onnx 1.10.1, 1.11.0, 1.12.0 (#31891) 
* Add checksums for py-onnx 1.10.1, 1.11.0, 1.12.0

* Update package.py
 2022-08-04 09:56:43 -07:00
iarspider
5512adbfc7 Add checksum for py-notebook 6.4.12 (#31924) 2022-08-04 09:54:44 -07:00
iarspider
ae6734a228 Add checksum for py-ipython 7.31.1 (#31923) 2022-08-04 09:53:15 -07:00
Auriane R
5c3e4f4a92 pika: add v0.7.0 (#31906) 2022-08-04 15:20:15 +00:00
Marie Houillon
2e487a90e9 New version for openCARP packages, v11.0 (#31652) 
Co-authored-by: openCARP consortium <info@opencarp.org>
 2022-08-04 16:32:12 +02:00
Massimiliano Culpo
0e40804cd0 Deprecate support for Python 3.5 (by removing it from CI) (#31908) 
* Deprecate support for Python 3.5 (by removing it from CI)

* Restore Python 3.9
 2022-08-04 15:26:56 +02:00
Filippo Spiga
80e6b6647f Adding JUBE 2.4.1, 2.4.2 and 2.4.3 (#31921) 2022-08-04 12:10:06 +02:00
iarspider
9173e1ad28 Add checksum for py-arrow 1.2.1 and 1.2.2 (#31894) 
* Add checksum for py-arror 1.2.1 and 1.2.2

* Update package.py

* Update var/spack/repos/builtin/packages/py-arrow/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Update package.py

* Update package.py

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-08-04 02:01:21 +00:00
Massimiliano Culpo
9a48035e49 asp: refactor low level API to permit the injection of configuration 
This allows writing extension commands that can benchmark
different configurations in clingo, or try different
configurations for a single test.
 2022-08-03 18:01:08 -07:00
Axel Huebl
e90ea79347 AMReX: 1D Option (#31913) 
Expose 1D support in AMREX_SPACEDIM.
 2022-08-03 16:54:51 -06:00
eugeneswalker
2b04c4f840 sundials@6.1.0:6.2.0 +rocm: patch nvector to use pic (#31910) 
* sundials@6.1.0:6.2.0 +rocm: patch nvector to use pic

* e4s ci: add sundials +rocm
 2022-08-03 16:01:59 -06:00
Cameron Rutherford
3a62f3aeae ExaGO: disable Python with rocm+ipopt. HiOp: fix umpire+raja costraints. RAJA: fix option naming for 0.14.0 (#31880) 2022-08-03 15:21:58 -06:00
Jen Herting
43be9a1ac1 New package: py-glymur (#31875) 
* [py-glymur] New Package: py-glymur

* [py-glymur] fixed copyright line

* [py-glumur] update import ine

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-03 10:13:25 -07:00
iarspider
849f01df86 Add checksum for py-smmap 3.0.5,4.0.0,5.0.0 (#31898) 2022-08-03 10:07:22 -07:00
Adam J. Stewart
6b23fe857e py-torchgeo: lock down pytorch-lightning version (#31886) 2022-08-03 10:26:38 -06:00
Glenn Johnson
26ec46e834 r-rhtslib: fix issue with git commit for v1.28 (#31653) 
There is a problem with the git repo for rhtslib that apparently led to
a bad version entry during the previous round of package updates. A git
checkout on the commit also fails so use branch for most recent version.
 2022-08-03 10:22:05 -06:00
Erik
d93c074491 AMReX: SYCL support (#31233) 
Add SYCL support, check CUDA-HIP-SYCL mutually exclusive. Require
AMReX ver 21.06+ for SYCL.

Co-authored-by: etpalmer63 <etpalmer63@users.noreply.github.com>
 2022-08-03 09:54:09 -06:00
Vicente Bolea
af0e20ba9f adios2: add v2.8.3 (#31885) 2022-08-03 07:25:52 -06:00
Harmen Stoppels
78364a6fe4 openssl: copy mozilla certs to work around symlink relocation issue (#31862) 2022-08-03 14:16:47 +02:00
Jen Herting
ba9b225ffc zopfli: add new package (#31879) 
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-03 06:02:02 -06:00
Piotr Luszczek
a5d49ef77a plasma: add code generation step for develop version (#31668) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-08-03 13:30:24 +02:00
Peter Scheibel
5603b031de Also set FC when building hypre+fortran (#31850) 2022-08-03 13:12:42 +02:00
dunatotatos
a8480281d5 QTLTools: add new package (#31881) 2022-08-03 12:42:45 +02:00
dunatotatos
ab87cac63f Match documentation of spack create with actual behavior. (#31892) 2022-08-03 10:38:56 +00:00
Jen Herting
09c56255c3 libspng: add new package (#31878) 
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-03 04:30:05 -06:00
Massimiliano Culpo
080a26a314 Remove macOS 10.15 from bootstrap tests (#31890) 
That version of the runners have been deprecated, see:
https://github.blog/changelog/2022-07-20-github-actions-the-macos-10-15-actions-runner-image-is-being-deprecated-and-will-be-removed-by-8-30-22/
 2022-08-03 12:29:29 +02:00
Yang Zongze
ad09f7a1af Make parmmg dependent on mmg and metis (#31838) 
1. copy source of mmg to its install tree for parmmg's build
2. add cmake args for parmmg
3. add '+mmg' when '+parmmg' for petsc
 2022-08-03 01:57:53 -06:00
Adam J. Stewart
8f55c3c34a py-pytorch-lightning: add v1.7.0 (#31871) 2022-08-03 09:44:27 +02:00
Ken Raffenetti
84073466e6 mpich: fix hwloc config option for version >= 4.0 (#31874) 
In MPICH 4.0, the config option for external hwloc changed from
--with-hwloc-prefix to --with-hwloc
 2022-08-03 09:21:50 +02:00
dependabot[bot]
4aaa3841b8 build(deps): bump actions/setup-python from 4.1.0 to 4.2.0 (#31882) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.1.0 to 4.2.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](c4e89fac7e...b55428b188)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-08-03 09:08:03 +02:00
Chris Green
4d2ed35552 black: fix bootstrap for Python 3.6 (#31872) 
* py-platformdirs: sanitize UTF-8 setup.cfg on Python 3.6

* py-platformdirs: black compliance

* Minimal fix per @adamjstewart
 2022-08-02 20:49:36 -06:00
Chuck Atkins
2ed03407f4 libedit: Make sure libedit linkes to the correct terminfo lib from spack (#31870) 2022-08-02 20:49:14 -06:00
eugeneswalker
0462818c2e e4s oneapi ci: build vtk-m ~openmp due to issue #31830 (#31840) 2022-08-02 14:45:58 -07:00
Harmen Stoppels
2ecec26188 ca-certificates-mozilla: add v2022-07-19 and v2022-04-26(#31863) 2022-08-02 15:30:02 -06:00
eugeneswalker
b3f221185e butterflypack %oneapi: patch CMakeLists to solve issue #31818 (#31848) 
* butterflypack %oneapi: patch CMakeLists to solve issue #31818

* uncomment builds affected by failing butterflypack

Co-authored-by: e <e>
 2022-08-02 14:02:00 -06:00
Andrew W Elble
e11211eec6 new package: py-alphafold (#27849) 
* new package: alphafold

and related dependencies, depends on #27138

* [@spackbot] updating style on behalf of aweits

* fix

Co-authored-by: aweits <aweits@users.noreply.github.com>
 2022-08-02 20:01:22 +00:00