Commit Graph

17071 Commits

Author SHA1 Message Date
Erik Schnetter
b5f812cd32
New package: reprimand (#25364) 2021-08-26 15:03:49 -07:00
Adam J. Stewart
6eb942cf45
Speedup environment activation, part 2 (#25633)
This is a direct followup to #13557 which caches additional attributes that were added in #24095 that are expensive to compute. I had to reopen #25556 in another PR to invalidate the GitLab CI cache, but see #25556 for prior discussion.

### Before

```console
$ time spack env activate .

real	2m13.037s
user	1m25.584s
sys	0m43.654s
$ time spack env view regenerate
==> Updating view at /Users/Adam/.spack/.spack-env/view

real	16m3.541s
user	10m28.892s
sys	4m57.816s
$ time spack env deactivate

real	2m30.974s
user	1m38.090s
sys	0m49.781s
```

### After
```console
$ time spack env activate .

real	0m8.937s
user	0m7.323s
sys	0m1.074s
$ time spack env view regenerate
==> Updating view at /Users/Adam/.spack/.spack-env/view

real	2m22.024s
user	1m44.739s
sys	0m30.717s
$ time spack env deactivate

real	0m10.398s
user	0m8.414s
sys	0m1.630s
```

Fixes #25555
Fixes #25541 

* Speedup environment activation, part 2
* Only query distutils a single time
* Fix KeyError bug
* Make vermin happy
* Manual memoize
* Add comment on cross-compiling
* Use platform-specific include directory
* Fix multiple bugs
* Fix python_inc discrepancy
* Fix import tests
2021-08-26 20:44:31 +00:00
Enrico Usai
9dab298f0d
aws-parallelcluster: add v2.11.2 (#25635)
Signed-off-by: Rex <shuningc@amazon.com>
2021-08-26 15:35:01 -05:00
Vanessasaurus
6a26322eb3
fixing "problems in speck" as identified by repology (#25491)
Most of these are perl packages that need to point to the meta docs site,
and then a fair amount of http addresses that need to be https, and then
the rest are usually documentation sites that no longer exist or were
otherwise changes

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-08-26 15:05:24 -05:00
lorddavidiii
c963bdee8b
opencl-c-headers and opencl-clhpp: add new versions (#25576) 2021-08-26 10:57:14 -07:00
Adam J. Stewart
6b3518d6fd
py-omegaconf: add missing dependency (#25589) 2021-08-26 10:55:42 -07:00
Glenn Johnson
6a31ca7386
opium package: add version 4.1 and update blas/lapack dependencies (#25591)
- remove unneeded dependency on blas
- create external-lapack variant
- patch makefile to not build lapack if `+external-lapack`

Also: 

- fix homepage link
- set parallel = False
- make references to `spec` consistent
- remove unneeded `build` method
2021-08-26 10:35:58 -07:00
Massimiliano Culpo
7dd3592eab
Regression test for version selection with preferences (#25602)
This commit adds a regression test for version selection
with preferences in `packages.yaml`. Before PR 25585 we
used negative weights in a minimization to select the
optimal version. This may lead to situations where a
dependency may make the version score of dependents
"better" if it is preferred in packages.yaml.
2021-08-26 09:28:47 -07:00
Harmen Stoppels
e602c40d09
zstd package: use make instead of CMake (#25610)
zstd doesn't use -pthread for the static lib anymore, so gcc should be fine
2021-08-26 08:30:30 -07:00
Rémi Lacroix
270cbf08e3
VTK: add version 9.0.3 (#25609) 2021-08-26 07:29:41 -07:00
Vanessasaurus
4ddc0ff218
fixing bugs with new package updates for samtools and abi-dum (#25615)
samtools needed more constraints for htslib, and abi-dumper was missing pkg-config
on the dependency universal ctags

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-08-26 07:39:46 +02:00
Xiao-Yong
204b49fc1f
py-grpcio: set parallel build jobs (#25616)
By default the number of parellel compiler processes launched by
py-grpcio equals the number of threads.  This commit limit it to
spack config build_jobs.
2021-08-26 01:08:05 +00:00
Olivier Cessenat
de3c0e62d0
New Package: perl-fth (#21879) 2021-08-25 19:16:13 -05:00
Kelly (KT) Thompson
e4e4bf75ca
[pkg][new version] Provide eospac@6.5.0beta (#25614)
* Provide new version of eospac.

+ Provide version 6.5.0beta.
+ Make version 6.4.2 the default

+ Also increment

* volunteer to be the maintainer (for now).
2021-08-25 16:35:49 -06:00
Matthieu Dorier
e2e7b0788f
[py-meshio] Added py-meshio package (#25578)
* Added py-meshio package

* Added setuptools dependency to py-meshio package

* Update var/spack/repos/builtin/packages/py-meshio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-meshio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-meshio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-meshio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-meshio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added missing py-importlib-metadata dependency in py-meshio

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-25 11:19:40 -06:00
arjun-raj-kuppala
3e2f890467
Bump up version for rocm-debug-agent - ROCm 4.3.0 (#25588) 2021-08-25 15:03:07 +02:00
Harmen Stoppels
6fab0e1b9c
libarchive: add v3.5.2, add maintainer, reworked recipe (#25604)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-08-25 05:16:45 -06:00
Harmen Stoppels
f4c9161f84
ca-certificates-mozilla: add v2021-07-05 (#25565) 2021-08-25 12:58:08 +02:00
Harmen Stoppels
fd095a3660
libuv: add v1.42.0, v1.41.1 (#25560) 2021-08-25 12:55:05 +02:00
lukebroskop
f6a9ef5ef5
Update the cray-mpich package to use the new cray-mpich MPI wrappers (#25597)
As of cray-mpich version 8.1.7, conventional MPI compiler wrappers are included in cray-mpich.

Co-authored-by: Luke Roskop <lroskop@cedar.head.cm.us.cray.com>
2021-08-24 23:50:02 -07:00
Andrew W Elble
7274d8bca2
openssl: new version 1.1.1l (#25586)
security update
2021-08-24 11:31:48 -06:00
Harmen Stoppels
73208f5835
Fix bindist network issues (#25587)
* Fix bindist network issues

* Another one using the network
2021-08-24 12:09:23 -05:00
Scott McMillan
107693fbd1
m4: fixes for the NVIDIA HPC SDK (#25546)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-08-24 17:07:03 +00:00
Christoph Conrads
b2968c817f
Melissa: add v0.7.1, deprecate v0.7.0 (#25584) 2021-08-24 09:46:45 -06:00
corentin-dev
213ec6df5f
petsc: added variants and dips (#24725)
Add HPDDM, MMG, ParMMG and Tetgen to PETSc.

Add mmg version 5.5.2 (compatible with PETSc).
Add parmmg, depending on mmg.
Add pic variant to tetgen for PETSc.
2021-08-24 07:43:35 -06:00
Timothy Brown
6e68792ded
Adding a heap of NOAA packages for UFS. (#25542)
* Adding a heap of NOAA packages for UFS.

Adding the Unified Forecast System (UFS) and all of the packages
it depends on.

* Fixing style tests.

* Removing the package CMAKE_BUILD_TYPE override.

* Removing compiler specs from `cmake_args()`.
2021-08-23 10:55:36 -06:00
Harmen Stoppels
2971a630b8
re2c: add versions up to v2.2 (#25500) 2021-08-23 02:28:31 -06:00
Adam J. Stewart
bf7ce7e4e9
curl: add tls multi-valued variant, fix macOS build (#25553) 2021-08-23 09:38:06 +02:00
Adam J. Stewart
c5c809ee3e
py-numpy: add v1.21.2 (#25436) 2021-08-23 09:26:51 +02:00
Adam J. Stewart
9a8d7ea3cb
py-ipykernel: add v6.2.0 and v5.5.5 (#25520) 2021-08-23 09:26:32 +02:00
Adam J. Stewart
a68701c636
py-pythran: add OpenMP dependency (#25137) 2021-08-22 09:02:21 +02:00
Cyrus Harrison
768ea7e8f7
ascent: a few small changes to the package (#25551)
- provides the site packages fix
- excludes the hdf5 linking changes (which are fixed in conduit@develop's build system)
- relaxes constraints to allows building static ascent against shared python
2021-08-21 18:01:27 +02:00
Adam J. Stewart
9b66138054
py-ipython: add v7.26.0 (#25521) 2021-08-21 04:19:38 -06:00
Sergey Kosukhin
cf7e40f03c
claw: add v2.0.3 (#25459) 2021-08-21 04:10:41 -06:00
Olli Lupton
8c25b17d8e
ccache: add v4.4. (#25540) 2021-08-21 11:02:49 +02:00
Asher Mancinelli
a7a37e4de6
hiop: add v0.4.6, v0.4.5, added maintainers (#25548) 2021-08-21 11:00:14 +02:00
Satish Balay
37a1885deb
py-libensemble: add maintainer (#25543) 2021-08-20 11:49:56 -06:00
Gilles Grospellier
81e4155eaf
mono: add v6.12.0.122, add maintainer (#25538) 2021-08-20 11:25:41 -06:00
Oliver Perks
7d666fc220
rsbench: Version bump and added compiler support (#25464)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-08-20 09:19:56 -06:00
Harmen Stoppels
c4e50c9efb
pkgconf: add v1.8.0 (#25480) 2021-08-20 08:22:44 -06:00
Adam J. Stewart
37e4d32d53
py-protobuf: fix checksums (#25469) 2021-08-20 15:03:33 +02:00
Sergey Kosukhin
c0bb2b9943
hdf5: support for Cray Fortran Compiler (#25466) 2021-08-20 15:00:14 +02:00
Adam J. Stewart
b1755c4fb3
py-torch: add v1.8.2 (#25471) 2021-08-20 14:56:58 +02:00
Christoph Conrads
2474b91078
file: make package discoverable (#25479) 2021-08-20 14:54:43 +02:00
Valentin Volkl
dcd19e7982
cupla: add new package (#25505) 2021-08-20 14:43:43 +02:00
Christoph Conrads
8be614729c
sed: make package discoverable (#25481) 2021-08-20 14:31:31 +02:00
Tamara Dahlgren
201f5bdfe8
WarpX: Actually skip tests when cannot be run (#25494) 2021-08-20 14:27:12 +02:00
Keita Iwabuchi
ef32ff0e4c
metall: add v0.16 and v0.14 (#25493) 2021-08-20 14:26:34 +02:00
Wouter Deconinck
2754f2f506
podio:add v0.13.1 (#25492)
This allows for fixed width integers in the fields, and other changes as in changelog https://github.com/AIDASoft/podio/releases/tag/v00-13-01.
2021-08-20 14:26:03 +02:00
Dylan Simon
89f442392e
gtkplus: needs libepoxy+glx (#25488)
build fails with ~glx
2021-08-20 14:25:32 +02:00