Commit Graph

27270 Commits

Author SHA1 Message Date
Sebastian Ehlert
8d1e66a627 fpm: add v0.5.0 (#27575) 2021-11-22 09:48:10 +01:00
Adam J. Stewart
7c14c86ffd py-laspy: add new package (#27576) 2021-11-22 09:45:30 +01:00
Tracy-Pantleo
49b0952371 portage, tangram, wonton: update dependencies (#26886)
* tangram/wonton spack

* portage spack update

* wonton spack updated

* tangram spack updated

* white space removed

* Update package.py

* Update package.py

* Update package.py

* Update package.py

portage spack upstream

* Update package.py

for loop test

* Update package.py

style errors

* Update package.py

* tangram

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

edits

* Update package.py

* Update package.py

remove @master

* Update package.py

remove @master

* Update var/spack/repos/builtin/packages/portage/package.py

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* Update var/spack/repos/builtin/packages/wonton/package.py

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>

* Update package.py

* Update package.py

* Update package.py

* Update package.py

Co-authored-by: Tracy Nicole Pantleo <tpantleo@varan.lanl.gov>
Co-authored-by: Tracy Nicole Pantleo - 361537 <tpantleo@darwin-fe1.lanl.gov>
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2021-11-19 22:09:56 -05:00
iarspider
e47fa05eb8 New version: py-pyzmq 22.3.0 (#27543)
* New version: py-pyzmq 22.3.0

* Update var/spack/repos/builtin/packages/py-pyzmq/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-19 13:53:02 -07:00
Adam J. Stewart
2c5fc14bf9 py-progressbar2: add v3.55.0 (#27558) 2021-11-19 14:35:44 -06:00
Adam J. Stewart
fd0f0e564d py-ruamel-yaml-clib: link to python (#27557) 2021-11-19 14:35:31 -06:00
Manuela Kuhn
aa934d00e3 py-jinja2: add 3.0.3 (#27560) 2021-11-19 14:35:18 -06:00
Raghu Raja
f26d25e24b libfabric: Add v1.14.0 release (#27562)
Signed-off-by: Raghu Raja <raghu@enfabrica.net>
2021-11-19 13:35:00 -07:00
Jen Herting
99f954f1c1 [py-pickle5] New package (#27533)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-11-19 14:31:22 -06:00
Joseph Snyder
d759612523 Add connection specification to mirror creation (#24244)
* Add connection specification to mirror creation

This allows each mirror to contain information about the credentials
used to access it.

Update command and tests based on comments

Switch to only "long form" flags for the s3 connection information.
Use the "any" function instead of checking for an empty list when looking
for s3 connection information.

Split test to use the access token separately from the access id and key.
Use long flag form in test.

Add endpoint_url to available S3 options.

Extend the special parameters for an S3 mirror to accept the
endpoint_url parameter.

Add a test.

* Add connection information per URL not per mirror

Expand the mirror-based connection information to be per-URL.
This will allow a user to specify different S3 connection information
for both the fetch and the push URLs.

Add a parameter for "profile", another way of storing the id/secret pair.

* Switch from "access_profile" to "profile"
2021-11-19 15:28:34 -05:00
Manuela Kuhn
a5c50220db py-werkzeug: add 2.0.2 (#27555) 2021-11-19 12:17:06 -07:00
Manuela Kuhn
cdc5b32240 py-cycler: add 0.11.0 and get sources from pypi (#27550)
* py-cycler: add 0.11.0

* Update var/spack/repos/builtin/packages/py-cycler/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-19 11:20:14 -07:00
Manuela Kuhn
efe635a3f8 py-debugpy: add 1.5.1 (#27551) 2021-11-19 11:05:12 -07:00
iarspider
0288ef8733 New version: py-pyaml 6.0 (#27542) 2021-11-19 11:35:50 -06:00
iarspider
e08ebff139 New version: py-qtconsole 5.2.0 (#27554)
* New version: py-qtconsole 5.2.0

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-19 10:10:59 -07:00
Jen Herting
af1b61569f New package: py-lws (#27536)
* [py-lws] added package

* added cython support

* updates for upstream

* updated py-lws with cython only option

* changes to py-lws for flake8

* [py-lws]

- update copyright
- url -> pypi

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-11-19 11:03:52 -06:00
Manuela Kuhn
7784ff55d6 py-filelock: add 3.4.0 (#27553) 2021-11-19 09:35:07 -07:00
iarspider
7be632b558 New version: openldap 2.6.0; (#27520)
* New version: openldap 2.6.0;
fix recipe for groff (requires pkg-config to find uchardet);
fix recipe for openldap (requires groff to build documentation)

* Restrict openldap versions of py-python-ldap and percona-server

* Update var/spack/repos/builtin/packages/groff/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-19 10:31:40 -06:00
iarspider
047062eedf New versopn: py-python-daemon 2.3.0 (#27519)
* New versopn: py-python-daemon 2.3.0

* Update package.py
2021-11-19 10:30:47 -06:00
iarspider
f472716e96 New version: py-pythran 0.10.0 (#27528)
* New version: py-pythran 0.10.0

* Update package.py
2021-11-19 10:21:21 -06:00
Manuela Kuhn
347da5f7b3 py-babel: add 2.9.1 (#27544) 2021-11-19 10:20:58 -06:00
Manuela Kuhn
4a18957093 py-coverage: add 6.1.2 (#27545) 2021-11-19 10:20:07 -06:00
Harmen Stoppels
3fcc6c669f Spack requires Python 2.7: from 0.18.0: (#27505)
* Spack requires Python 2.7: from 0.18.0:

* Better bounds
2021-11-19 10:18:21 -06:00
Manuela Kuhn
33b380937a py-cryptography: add 3.4.8 and 35.0.0 (#27548) 2021-11-19 10:16:21 -06:00
Manuela Kuhn
eb515b87d7 py-click: add 8.0.3 (#27549) 2021-11-19 10:13:24 -06:00
Harmen Stoppels
c5aee4d9b4 define_from_variant: return an empty string for non-existing variants (#27503)
This permits to use conditional variants without a lot of boilerplate.
2021-11-19 14:10:00 +01:00
iarspider
3db918b1cd New version: py-pytools 2021.2.9 (#27531) 2021-11-19 02:23:03 -07:00
Michael Kuhn
eefff81289 otf: specify zlib prefix explicitly (#27491)
This causes `otfconfig` to also list zlib's library directory.
Otherwise, `-lz` cannot be found. Also remove `--with-zlibsymbols`,
which doesn't seem to be supported anymore.
2021-11-19 09:37:27 +01:00
Michael Davis
3375db12a5 Adding --reuse to dev-build command. (#27487) 2021-11-19 09:25:45 +01:00
Diego Alvarez
4d059ead8c nextflow: add v21.10.1 (#27538) 2021-11-19 09:21:14 +01:00
Eric Brugger
4cf71b2c7f VisIt: update for building with 3.2.1. (#27036)
Include several several patches to vtk 8.1 for building on a 
system with no system install X11 libraries or include files.

Specify specific versions of dependent packages that are known to work with 3.2.1.

Tested on spock.olcf.ornl.gov. The GUI came up and rendered images 
and an image was successfully saved using off screen rendering from 
data from curv2d.silo.
2021-11-19 09:05:13 +01:00
Massimiliano Culpo
57d3b02800 Remove spurious debug print (#27541) 2021-11-19 09:02:22 +01:00
haralmha
4d1f09c752 thepeg: fix version condition bug (#27501) 2021-11-19 08:56:00 +01:00
iarspider
c183111a61 py-rapidjson: add version 1.5 (#27527) 2021-11-18 17:52:06 -08:00
Manuela Kuhn
0b6ce17dc4 py-ply: get sources from pypi (#27526)
* py-ply: use pypi

* Add py-setuptools dependency
2021-11-18 16:52:51 -07:00
Massimiliano Culpo
e3cd91af53 Refactor bootstrap of "spack style" dependencies (#27485)
Remove the "get_executable" function from the
spack.bootstrap module. Now "flake8", "isort",
"mypy" and "black" will use the same
bootstrapping method as GnuPG.
2021-11-18 15:23:09 +01:00
iarspider
d0c4aeb0c0 Fix cyrus-sasl recipe: requires groff to build documentation (#27522) 2021-11-18 15:10:37 +01:00
Massimiliano Culpo
f981682bdc Allow recent pytest versions to be used with Spack (#25371)
Currently Spack vendors `pytest` at a version which is three major 
versions behind the latest (3.2.5 vs. 6.2.4). We do that since v3.2.5 
is the latest version supporting Python 2.6. Remaining so much 
behind the currently supported versions though might introduce 
some incompatibilities and is surely a technical debt.

This PR modifies Spack to:
- Use the vendored `pytest@3.2.5` only as a fallback solution, 
  if the Python interpreter used for Spack doesn't provide a newer one
- Be able to parse `pytest --collect-only` in all the different output 
  formats from v3.2.5 to v6.2.4 and use it consistently for `spack unit-test --list-*`
- Updating the unit tests in Github Actions to use a more recent `pytest` version
2021-11-18 15:08:59 +01:00
Harmen Stoppels
8f7640dbef ci: run style unit tests only if we target develop (#27472)
Some tests assume the base branch is develop, but this branch may not
have been checked out.
2021-11-18 13:00:39 +01:00
Alec Scott
7ee736a158 Add Clingo v5.5.1 (#27512) 2021-11-18 06:27:01 +01:00
Glenn Johnson
b260efd9c4 new package: py-scikit-learn-extra (#27439)
* new package: py-scikit-learn-extra

* Remove extra blank line

* Add missing py-cython dependency
2021-11-17 23:13:19 -06:00
Manuela Kuhn
b4fcb4d43c py-envisage: add 6.0.1 (#27517) 2021-11-17 23:12:28 -06:00
haralmha
301a506aa2 py-pygraphviz: Add version 1.7 (#26712)
* Add version 1.7

* Fixup! Add version 1.7
2021-11-17 23:08:56 -06:00
Harmen Stoppels
40a6ac62d3 llvm: introduce [build/link]_llvm_dylib (#27450)
Apart from building a single dylib for LLVM, users should also be able
to link tools against it.
2021-11-17 20:10:59 -07:00
Alec Scott
d24d13559b Add Htslib v1.14, Samtools v1.14, and Bcftools v1.14 (#27515) 2021-11-17 14:30:18 -08:00
Axel Huebl
367c3d8a83 openPMD-validator: 1.1.0.2 (#27514)
Add the latest versions.
2021-11-17 14:26:23 -08:00
Alec Scott
684d9cef23 Add LMOD v8.5.27 (#27513) 2021-11-17 14:21:57 -08:00
Ben Bergen
c459adbf6a Updated Repository Information (#27496) 2021-11-17 10:02:41 -08:00
Jose E. Roman
d9a39d6128 New patch release SLEPc 3.16.1 (#27509) 2021-11-17 09:57:53 -08:00
Manuela Kuhn
26c5001ec4 py-ipykernel: add 5.5.6 (#27498) 2021-11-17 11:06:08 -06:00