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Author SHA1 Message Date
Todd Gamblin
2ae92ebdbb Use AWS CloudFront for source mirror (#23978) 
Spack's source mirror was previously in a plain old S3 bucket. That will still
work, but we can do better. This switches to AWS's CloudFront CDN for hosting
the mirror.

CloudFront is 16x faster (or more) than the old bucket.

- [x] change mirror to https://mirror.spack.io
 2021-09-21 16:58:41 -07:00
Harmen Stoppels
7f29dd238f Cray: fix extracting paths from module files (#23472) 
Co-authored-by: Tiziano Müller <tm@dev-zero.ch>
 2021-09-21 16:58:41 -07:00
Adam J. Stewart
0f486080b3 Fix use of quotes in Python build system (#22279) 2021-09-21 16:58:41 -07:00
Michael Kuhn
6b0c775448 clang/llvm: fix version detection (#19978) 
This PR fixes two problems with clang/llvm's version detection. clang's
version output looks like this:

```
clang version 11.0.0
Target: x86_64-unknown-linux-gnu
```

This caused clang's version to be misdetected as:

```
clang@11.0.0
Target:
```

This resulted in errors when trying to actually use it as a compiler.

When using `spack external find`, we couldn't determine the compiler
version, resulting in errors like this:

```
==> Warning: "llvm@11.0.0+clang+lld+lldb" has been detected on the system but will not be added to packages.yaml [reason=c compiler not found for llvm@11.0.0+clang+lld+lldb]
```

Changing the regex to only match until the end of the line fixes these
problems.

Fixes: #19473
 2021-09-21 16:58:41 -07:00
Adam J. Stewart
9120856c01 Fix fetching for Python 3.9.6 (#24686) 
When using Python 3.9.6, Spack is no longer able to fetch anything. Commands like `spack fetch` and `spack install` all break.

Python 3.9.6 includes a [new change](https://github.com/python/cpython/pull/25853/files#diff-b3712475a413ec972134c0260c8f1eb1deefb66184f740ef00c37b4487ef873eR462) that means that `scheme` must be a string, it cannot be None. The solution is to use an empty string like the method default.

Fixes #24644. Also see https://github.com/Homebrew/homebrew-core/pull/80175 where this issue was discovered by CI. Thanks @branchvincent for reporting such a serious issue before any actual users encountered it!

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
 2021-09-21 16:58:41 -07:00
Edward Hartnett
90d953d3f6 w3emc: add NOAA software maintainers (#26110) 2021-09-21 17:54:19 -06:00
Tiziano Müller
d34b2638c7 boost: fix for @1.77.0%intel (#25965) 
Add patch for build script from boost repo.
 2021-09-21 16:07:25 -07:00
bernhardkaindl
979c355c99 spack/build_environment.py: Clean MAKEFLAGS, DISPLAY and TERM (#26092) 
clean_environment(): Unset three more environment variables:

MAKEFLAGS: Affects make, can eg indirectly inhibit enabling parallel build
DISPLAY: Tests of GUI widget libraries might try to connect to an X server
TERM: Could make testsuites attempt to color their output
 2021-09-22 00:23:10 +02:00
Edward Hartnett
92f199d57b added NOAA software maintainers to the maintainers list (#26102) 2021-09-21 16:16:49 -06:00
Edward Hartnett
fd716ce0c5 sfcio: add NOAA software maintainers (#26108) 
* added NOAA software maintainers to maintainer list

* added comment about NCEPLIBS project
 2021-09-21 15:28:37 -06:00
Edward Hartnett
d865caa7f7 ip2: add NOAA software maintainers and deprecation note (#26107) 
* added NOAA software maintainers to maintainer list, added comment about library being deprecated

* deleted trailing whitespace
 2021-09-21 14:49:13 -06:00
bernhardkaindl
981551b47f libtool: fix running the unit-tests with spack install --test root (#25707) 
Besides adding autoconf and automake as needed for tests of 2.4.6,
skip Fortran test cases when Fortran compilers are not provided.
 2021-09-21 14:18:29 -06:00
Tamara Dahlgren
c3cb863b82 Feature: Add deprecated versions section to spack info output (#25972) 2021-09-21 11:49:36 -07:00
AMD Toolchain Support
8de77bb304 Fix for - Installation issue: amdlibflame #25878 (#25987) 
* Fix for - Installation issue: amdlibflame #25878

* Updated with python+pythoncmd - Symlink 'python3' executable to 'python'
 2021-09-21 11:15:23 -07:00
Edward Hartnett
a8977f828e w3nco: add NOAA software maintainers (#26111) 2021-09-21 12:08:43 -06:00
Jonas Thies
6c487f4c6d packages/phist new version 1.9.5 (#26114) 2021-09-21 11:57:22 -06:00
Edward Hartnett
24500d4115 added noaa software maintainers to maintainer list (#26103) 2021-09-21 09:58:53 -07:00
iarspider
2741037c69 Fix FORM recipe (#26104) 2021-09-21 09:57:40 -07:00
Edward Hartnett
d278837316 sigio: add NOAA software maintainers (#26109) 2021-09-21 10:39:05 -06:00
bernhardkaindl
22cfc19bcb ddd,debuild,flux-sched: add missing dependencies (#26090) 2021-09-21 18:08:11 +02:00
Melven Roehrig-Zoellner
c24413a530 petsc: fix for enabling openmp (#25942) 
* petsc: fix for enabling openmp

* petsc: shorten comment (style guidelines)

* petsc: move flag to make code more clear
 2021-09-21 07:13:35 -06:00
natshineman
544b3f447d mvapich2-gdr: add v2.3.6 (#26076) 
Co-authored-by: Nick Contini <contini.26@buckeyemail.osu.edu>
 2021-09-21 06:19:56 -06:00
Gregory Lee
05ca19d9d7 fgfs: fix missing autotools depends_on (#26005) 
* added build deps for fgfs

* added build deps when building master branch
 2021-09-21 07:40:59 -04:00
Harmen Stoppels
a326713826 py-abcpy: new package (#25713) 2021-09-21 13:10:16 +02:00
bernhardkaindl
1b95c97bb3 ccfits: add v2.6 (#26089) 
ccfits@2.5 doesn't compile on Ubuntu 18.04: Update to version 2.6.
 2021-09-21 04:43:48 -06:00
bernhardkaindl
c6a33c28de Fix deps of diffmark,faiss,fgsl,fipcheck,nbdkit,ncbi-magicblast,xcb-util-cursor (#26091) 
Fix missing type='build' deps for cpio, m4, pkg-config and python in
diffmark, faiss, fgsl, fipcheck, nbdkit, ncbi-magicblast and xcb-util-cursor
 2021-09-21 04:16:43 -06:00
Harmen Stoppels
58663692a4 Rename 'variant_name' to 'variant' and document it in autotools build system (#26064) 2021-09-21 11:27:41 +02:00
Christoph Junghans
45ba4d94bd votca-* packages: add version 2021.2 (#26058) 2021-09-20 16:14:19 -07:00
Adam J. Stewart
3e3b7b1394 New package: py-torchgeo (#26059) 2021-09-20 16:12:55 -07:00
Jordan Ogas
d0fd9e6d5f charliecloud package: add version 0.25 (#26073) 2021-09-20 16:08:41 -07:00
adityakavalur
88880c5369 Include newer versions of UCX (#26072) 2021-09-20 23:41:26 +02:00
Danny McClanahan
aa7e354a3a patch serf and scons to use #!/usr/bin/env python3 (#26062) 2021-09-20 22:12:30 +02:00
iarspider
f3d2f62468 Add variants to FORM recipe (#25963) 2021-09-20 13:53:54 -06:00
Edward Hartnett
65f285831e added NOAA maintainers to ip package (#26055) 2021-09-20 11:36:03 -06:00
Olivier Cessenat
0197b364a2 mfem and petsc: alter hypre dependencies (#25902) 
Hypre latest version 2.22.1 breaks MFEM and PETSc.
 2021-09-20 09:51:29 -07:00
Edward Hartnett
96eefea9a3 added NOAA software team to maintainers list (#26056) 2021-09-20 09:01:53 -06:00
Olivier Cessenat
1ea58e0cb9 p7zip: resolve gcc 10 conflict (#25676) 
Fix credit: Eric Brugger
 2021-09-20 07:43:07 -04:00
Tamara Dahlgren
c6f9e9baf6 strumpack: Update stand-alone test to use stage directory (#25751) 2021-09-20 07:36:58 -04:00
kjrstory
430caaf5f6 paraview: patch for version 5.9.1 with gcc 11.1.0 (#25887) 
* paraview: patch for version 5.9.1 with gcc 11.1.0

* Fix : blank line contains whitespace
 2021-09-20 07:31:54 -04:00
Robert Underwood
6476e0cf02 gdb: new version v11.1 (#25920) 2021-09-20 07:30:37 -04:00
Jen Herting
acd4186a88 New packages: py-imgaug (#25894) 
* updates from sid

* [py-imgaug] url -> pypi

* [py-imgaug] added version 0.4.0 and fixed up dependencies

* [py-imgaug] updated copyright

Co-authored-by: Andrew Elble <aweits@rit.edu>
 2021-09-20 07:29:43 -04:00
iarspider
ca8d16c9d1 Allow setting variant name in AutotoolsPackage._activate_or_not (#26054) 2021-09-20 10:54:24 +02:00
jacorvar
d20fa421ca Fix R version (#26061) 
R version should be `3.0.0` instead of `3.00`.
 2021-09-20 10:47:40 +02:00
Edward Hartnett
8fceaf4a33 added NOAA software team to maintainers list (#26057) 2021-09-19 19:02:02 -06:00
Vanessasaurus
534bad0ff7 updating OmegaH to 9.34.1 (#26015) 2021-09-19 08:55:54 -06:00
Todd Gamblin
4f8b643404 Create SECURITY.md 2021-09-19 06:43:14 -07:00
Vanessasaurus
c2f42a6f09 updating kokkos to 3.4.01 (#26013) 2021-09-19 06:10:55 -06:00
Vanessasaurus
148c7aeb06 updating singularity to 3.8.3 (#26020) 
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2021-09-19 04:20:15 -06:00
jacorvar
4f79a83dd1 Fix R version (#26047) 
R version should be `3.0.0`, in contrast to `3.00`.
 2021-09-19 12:14:14 +02:00
Alec Scott
2d4d51eb5e Add v1.6.0 to Benchmark (#25996) 2021-09-18 20:59:02 -06:00