* new package: gatetools
This PR adds the gatetools package and dependencies. The gatetools
package is a set of command line tools for gate. Since it is primarily a
CLI, although python modules can be loaded, it is named gatetools as
opposed to py-gatetools.
* Fix quote characterss to avoid test error
* Found another UTF8 character that was tripping up tests
* Another UTF-8 character to replace
* Remove py-python-box dependency and package file
* Make numpy a variant
- py-setuptools needs to be a run dependendency
This was masked by py-numpy having py-setuptools as a run dependency.
* Add missing build depency on py-pytest-runner
- set constraint for geant4 to version 10.6 as gate does not work with
geant-10.7+
- set GATE_USE_ITK: Although RTK is built under ITK, there are some ITK
macros that need to be set explicitly.
As pointed out in https://github.com/STEllAR-GROUP/hpx/issues/5239,
there is an issues in OTF2 <=2.2 where a variable is not properly
initialized. As currently no release of OTF2 is available fixing this,
the patch should be applied.
* [py-scikit-image] Added py-setuptools back into depends_on. Otherwise it is putting skimage in scikit_image-version-pyX.Y-arch.egg dir under site-packages
* [py-scikit-image] Added latest version
* [py-scikit-image] Added py-numpy version dependency when package version greater than 0.18
* [py-scikit-image] Updates to python dependency
* Fix typo
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
- Add a maintainer
- Help libtool to find the correct paths to libraries
- Handle externals from system directories
- Enable eccodes for older versions
* The fltk package can build libraries with opengl support. By default, the configure script looks for opengl headers in the sytem include paths. If 'devel' packages have not been installed on the system it omits the 'ftlk_gl.so' library. This can break packages like 'octave' which expects 'fltk' to have opengl support and looks for the library 'fltk_gl'.
Make opengl support explicit in fltk by adding a dependency on 'gl' and adding a new variant of the same name 'gl' (default On).
With these modifications 'fltk_gl' and 'octave' build successfully on CentOS8.
The default behavior is to always enable opengl.
https://www.fltk.org/doc-1.3/intro.html
* Add patch for latest hwloc@:1 to locate ncurses
This way we don't have to depend on ncurses~termlib, which may run into
issues when another package explicitly depends on ncurses+termlib
* Move termcap to the back, cause it's a system symlink on macos and isn't set by spack
- add new version, 4.09.1
- use github url
- convert to autotools package
- deprecate version 4.07b: This version requires manual download and is
a binary only installation.
- version 4.0.7 was not building
- version 4.0.9 was not setting search correctly due to an extra "return"
in config
- added version 4.1.2-p1
- new version needs py-h5py
- new version does not need utf8 patch
- url format changed
Add a conflict for CUDA and shared libraries in Ascent.
The new concretizer will automatically change the default for
Ascent in that case. Until then, dependencies like WarpX need
to hint the `~shared` wish explicitly.
This initial package recipe uses a custom-built wrapper to drive an internal CMake file. Since nekRS also includes built-in copies of several dependencies such as BLAS and HYPRE, it cannot be linked with other such dependencies. However, to work with the `ceed` metapackage, we cannot add `^blas` conflicts to nekRS.
See https://github.com/spack/spack/pull/22519 for discussion.
* Add patch for Intel C++ compiler
- On some machines (in particular MacOSX Catalina), the icpc in some way
utilizes the preprocessor of the associated "developer tools" used by
icpc. This leads to, in some cases, a preprocessor claiming support for
__tuple_element_packs, even though icpc (as of version 21.1) can't
actually parse such code. Just use the MPARK_TUPLE_ELEMENT_PACK impl
with __icc until icpc supports it, to avoid issues with developer tools
that are untested.
- The same patch has been PRed against mpark-variant
Backwards incompatible cleanup to target single-tarball-per-arch builds
going forwards.
* Replace per-distro versions with new per-arch builds, and add
url_for_version to avoid specifying per tarball.
* Customise environment setup to avoid adding lib to LD_LIBRARY_PATH.
* Update homepage and licensing URLs.
* Avoid shell interpretation when running textinstall.sh.
* Added NickRF as maintainer.
Use `conflicts` directive whenever possible.
This allows failing early when conflicting variants are used.
Do not silently ignore `+parmetis` variant when `~metis`.
Instead throw an error during concretization.
Simplify the "Makefile.inc" generation.
This will make easier to add new variants in the future.
* Added version patch for 1.4.0 tag on mpark-variant
Redirected urls to git and github tags.
* Updated to commit hashes
* Update var/spack/repos/builtin/packages/mpark-variant/package.py
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update var/spack/repos/builtin/packages/mpark-variant/package.py
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update var/spack/repos/builtin/packages/mpark-variant/package.py
Co-authored-by: Anthony J Zukaitis <zukaitis@lanl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Original commit message:
This feature of CMake allows packages to increase reproducibility, especially between
Spack- and manual builds. It also allows packages to sidestep certain parsing bugs in
extremely long ``cmake`` commands, and to avoid system limits on the length of the
command line.
Adding:
Co-authored by: Chris White <white238@llnl.gov>
This reverts commit c4f0a3cf6c.
CachedCMakePackage is a specialized class for packages built using CMake initial cache.
This feature of CMake allows packages to increase reproducibility, especially between
Spack- and manual builds. It also allows packages to sidestep certain parsing bugs in
extremely long ``cmake`` commands, and to avoid system limits on the length of the
command line.
* New package py-argh
* Fixed deps
* Changed setuptools type
* Update var/spack/repos/builtin/packages/py-argh/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Fixed a bug in the DiHydrogen package where the variant legacy was
changed to distconv and wasn't fully propagated. Cleaned up the
openmp variants on the blas library packages in DiHydrogen and
Elemental. Extended support for Aluminum v1.0 in LBANN, Hydrogen, and
DiHydrogen. Fixed a when clause in the LBANN dependencies.
* Removed the upper range limit for the Aluminum library dependence
* Update var/spack/repos/builtin/packages/dihydrogen/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
fixes#22565
This change enforces the uniqueness of the version_weight
atom per node(Package) in the DAG. It does so by applying
FTSE and adding an extra layer of indirection with the
possible_version_weight/2 atom.
Before this change it may have happened that for the same
node two different version_weight/2 were in the answer set,
each of which referred to a different spec with the same
version, and their weights would sum up.
This lead to unexpected result like preferring to build a
new version of an external if the external version was
older.
This adds MPICC=/path/to/intel-oneapi/mpicc etc to he dependents build stage enabling the use of the compiler wrappers.
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
* clingo: modify recipe for bootstrapping
Modifications:
- clingo builds with shared Python only if ^python+shared
- avoid building the clingo app for bootstrapping
- don't link to libpython when bootstrapping
* Remove option that breaks on linux
* Give more hints for the current Python
* Disable CLINGO_BUILD_PY_SHARED for bootstrapping
* bootstrapping: try to detect the current python from std library
This is much faster than calling external executables
* Fix compatibility with Python 2.6
* Give hints on which compiler and OS to use when bootstrapping
This change hints which compiler to use for bootstrapping clingo
(either GCC or Apple Clang on MacOS). On Cray platforms it also
hints to build for the frontend system, where software is meant
to be installed.
* Use spec_for_current_python to constrain module requirement
* ASP-based solver: avoid adding values to variants when they're set
fixes#22533fixes#21911
Added a rule that prevents any value to slip in a variant when the
variant is set explicitly. This is relevant for multi-valued variants,
in particular for those that have disjoint sets of values.
* Ensure disjoint sets have a clear semantics for external packages
* py-dask-glm: Push again for testing with git.
* py-dask-glm: Fixed the pointed out OSS dependency setting to type=build.
* py-dask-glm: Set depends_on to type=build in the OSS to be built when building the document.
* py-dask-glm: Fix type of depends_on (py-scikit-learn)
Co-authored-by: miura <miura@fx7-pg01.cm.cluster>
* fix issue #22228 build of gdk-pixbuf
* Update var/spack/repos/builtin/packages/gdk-pixbuf/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
This package used to be a part of rpm, but now is being developed separately.
It will supposedly be moved to a sourceware branch (it is maintained by
redhat) but I do not know if this will happen soon. We need it in order
to change locations in binaries that are built in /tmp and then moved
elsewhere. I will ping @woodard who might be able to give us an estimate
if we should include this development repository or wait for it to be
moved elsewhere. Once this is merged, we will want to use the bootstrap
approach to install and use the library from spack.
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
* Replace URL computation in base IntelOneApiPackage class with
defining URLs in component packages (this is expected to be
simpler for now)
* Add component_dir property that all oneAPI component packages must
define. This property names a directory that should exist after
installation completes (useful for making sure the install was
successful) and also defines the search location for the
component's environment update script.
* Add needed dependencies for components (e.g. intel-oneapi-dnn
requires intel-oneapi-tbb). The compilers provided by
intel-oneapi-compilers need some components under certain
circumstances (e.g. when enabling SYCL support) but these were
omitted since the libraries should only be linked when a
dependent package requests that feature
* Remove individual setup_run_environment implementations and use
IntelOneApiPackage superclass method which sources vars.sh
(located in a subdirectory of component_dir)
* Add documentation for IntelOneApiPackge build system
Co-authored-by: Vasily Danilin <vasily.danilin@yandex.ru>
