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Author SHA1 Message Date
Andrey Perestoronin
bb2975b7f1 intel-oneapi-compilers 2024.0.2 (#41778) 
* new compiler packages

* Fix ifort version number

---------

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
 2023-12-19 23:08:20 -07:00
Annop Wongwathanarat
1168f19e60 Require target=x86_64 for some packages (#41633) 
This resolves issue #41148
 2023-12-19 17:50:49 -07:00
Peter Scheibel
5d50ad3941 "spack diff": add ignore option for dependencies (#41711) 
* add trim function to `Spec` and `--ignore` option to 'spack diff'

Allows user to compare two specs while ignoring the sub-DAG of a particular dependency, e.g.

spack diff --ignore=mpi --ignore=zlib trilinos/abcdef trilinos/fedcba

to focus on differences closer to the root of the software stack
 2023-12-19 16:37:44 -08:00
kwryankrattiger
a43156a861 CI: Disable downloading artifacts from upstream jobs (#41432) 
* CI: Disable downloading artifacts from upstream jobs

* CI: Default .base-jobs are `when:manual`
 2023-12-19 15:53:28 -07:00
Harmen Stoppels
ec2729706b environment_modifications_for_specs: do not mutate spec.prefix (#41737) 
Sometimes env variables computed in `setup_run_environment` depend on tests
w.r.t. files in `spec.prefix`, but Spack temporarily projects `spec.prefix` to
the view. 

This is problematic for two reasons:

1. Some packages iterate over `<prefix>/bin`: they expect only the current
   package's executables, but find all linked in the view, leading to false
   positives.
2. Some packages test for `os.path.islink(...)`, which is always true in a view

`gcc` is an example that does both.

This PR lets Spack compute the environment modifications using the original
prefix, and projects to the view afterwards
 2023-12-19 23:33:16 +01:00
Dom Heinzeller
494d3f9002 Skip 'icc.patch' in var/spack/repos/builtin/packages/py-gevent/package.py for py-gevent@23.7.0+ (#41568) 2023-12-19 12:44:29 -06:00
Harmen Stoppels
4f8b856145 e4s: add julia (#41768) 2023-12-19 18:17:54 +01:00
Massimiliano Culpo
0eca79e7e4 Add an audit to prevent virtual packages with variants specified (#41747) 
Currently, a virtual spec is composed of just a name and a version. When a virtual spec contains other components, such as variants, Spack won't emit warnings or errors but will silently drop them - which is unexpected by users.
 2023-12-19 18:05:33 +01:00
Ben Wibking
f245bde772 adios2: fix build failure in 2.7.1 (#41753) 2023-12-19 17:58:05 +01:00
Mikael Simberg
4aee067bb0 umpire: backport -fcompare-debug-second flag removal (#41506) 2023-12-19 17:24:52 +01:00
Martin Aumüller
cc25a0e561 ffmpeg: mostly build fixes (#41050) 2023-12-19 17:23:23 +01:00
Aiden Grossman
3f063153f0 openblas: add patches to build with clang (#39138) 2023-12-19 17:22:29 +01:00
Dr Marco Claudio De La Pierre
aa350a4ed1 removing deprecated: recipes tower-agent and tower-cli, as nf- prefixed recipes available (#41576) 
Signed-off-by: Dr Marco Claudio De La Pierre <marco.delapierre@seqera.io>
 2023-12-19 17:16:26 +01:00
Brian Van Essen
e36bee41a0 lbann: relax the requirement on protobuf (#41591) 2023-12-19 17:16:04 +01:00
dependabot[bot]
138d0c7a13 build(deps): bump black from 23.11.0 to 23.12.0 in /lib/spack/docs (#41615) 
Bumps [black](https://github.com/psf/black) from 23.11.0 to 23.12.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.11.0...23.12.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-19 17:14:05 +01:00
Thomas-Ulrich
a688479564 easi: specify better the impalajit dependency (#41637) 2023-12-19 17:08:22 +01:00
Wouter Deconinck
5ead4c2d56 pcre: ensure consistency between autotools and cmake builds (#41644) 
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2023-12-19 16:57:59 +01:00
Richard Berger
2e18fbbdeb legion: do not set HIP_PATH env variable (#41660) 
* legion: do not set HIP_PATH env variable

* flecsi: workaround Legion CMake for +rocm
 2023-12-19 16:14:19 +01:00
Howard Pritchard
02eafeee03 openmpi: allow external libevent in general case (#41686) 
add a internal-libevent variant to add an out.

related to #41549

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2023-12-19 14:54:25 +01:00
wspear
812a43621b tau : v2.33.1 and later requires otf2 v3 (#41691) 2023-12-19 12:20:47 +01:00
Richard Berger
0fe338b526 legion: inject correct mpicc to embedded GASnet slingshot11 config (#41701) 2023-12-19 12:20:05 +01:00
Tom Payerle
3dc02e55e6 ufs-weather-model: add build dependency (#41724) 2023-12-19 04:18:48 -07:00
Adam J. Stewart
7023edb37c PyTorch: update ecosystem (#41713) 2023-12-19 12:18:25 +01:00
James Beal
f1fdaca345 samtools: add v1.19 (#41634) 
Co-authored-by: James Beal <jb23@sanger.ac.uk>
 2023-12-19 12:13:57 +01:00
Mikael Simberg
d4454e54dc ut: add v2.0.0 and v2.0.1 (#41771) 2023-12-19 04:13:33 -07:00
Paul Kuberry
969718d176 xyce: remove CMake test for all compilers (#41679) 2023-12-19 12:10:16 +01:00
Jack Morrison
0a9179fddb intel-mpi-benchmarks: add v2021.7, v2021.6, v2021.5, v2021.4 (#41730) 2023-12-19 11:42:13 +01:00
Pramod Kumbhar
b5b0a76991 creduce: fix build of @develop (#41258) 2023-12-19 11:30:42 +01:00
Christopher Christofi
59b39f3eba uthash: add new package (#41732) 2023-12-19 11:26:13 +01:00
Wouter Deconinck
7a0c4e8017 acts: new versions 31.* (#41733) 
This adds three new versions in the 31.* series. Release notes of 31.0.0 at https://github.com/acts-project/acts/releases/tag/v31.0.0. No changes to the CMakeLists.txt files that need addressing in the package recipe.

The only new feature I'm a bit concerned about is https://github.com/acts-project/acts/pull/2626, which replaces testing for C++20 concepts support by the feature-testing macro `__cpp_concepts`, which is also a C++20 feature. So technically we now should require `cxxstd=20` even though Acts itself still allows (and defaults to) 17. Judging by https://en.cppreference.com/w/cpp/compiler_support/20, the support for feature-testing macros was added very early by most compilers.
 2023-12-19 11:13:07 +01:00
Thomas Madlener
1ddf4ee6ba whizard: fix support for building with hepmc output (#41538) 2023-12-19 11:12:27 +01:00
dependabot[bot]
12d0507cb7 build(deps): bump black in /.github/workflows/style (#41616) 
Bumps [black](https://github.com/psf/black) from 23.11.0 to 23.12.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.11.0...23.12.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-19 10:47:57 +01:00
Wouter Deconinck
cf99912352 flexiblas: explicitly set SYSCONFDIR (#41748) 
As of CMake 3.4, [GNUInstallDirs](https://cmake.org/cmake/help/latest/module/GNUInstallDirs.html) treats `SYSCONFDIR` differently for a prefix that starts with `/opt`, then "the SYSCONFDIR value etc becomes /etc/opt/...." In the case of flexiblas, that results in failing attempts to write files to a system directory.

Since [flexiblas version 1](0f2d2c7659 (diff-1e7de1ae2d059d21e1dd75d5812d5a34b0222cef273b7c3a2af62eb747f9d20aR16)), we can override SYSCONFDIR with our own defines.
 2023-12-19 10:47:16 +01:00
snehring
9723fe88f5 rebayes: add v1.2.2 (#41749) 2023-12-19 10:44:16 +01:00
Christopher Christofi
2439ff56a5 kalign: add v3.4.0 (#41758) 
Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
 2023-12-19 10:35:23 +01:00
Massimiliano Culpo
2ef8d09fc7 spack config get/blame: with no args, show entire config 
This PR changes the default behavior of `spack config get` and `spack config blame`
to print a flattened version of the entire spack configuration, including any active 
environment, if the commands are invoked with no section arguments.

The new behavior is used in Gitlab CI to help debug CI configuration, but it can also
be useful when asking for more information in issues, or when simply debugging Spack.
 2023-12-19 01:26:53 -08:00
Mosè Giordano
e5e767b300 julia: set compatibility with suite-sparse (#41754) 2023-12-19 10:17:06 +01:00
Rocco Meli
1c6b38f36d gnina: add version 1.1 (#41762) 2023-12-19 09:39:46 +01:00
Arne Becker
091cd47caa tnftp: new package (#41763) 2023-12-19 09:38:42 +01:00
John W. Parent
1ebf1a0c6c libxml2: correct improper use of base builder meta (#41760) 2023-12-19 09:34:59 +01:00
Greg Becker
56761649a2 environment modifications for externals (#41723) 
* allow externals to configure environment modifications

* docs for external env modification

---------

Co-authored-by: becker33 <becker33@users.noreply.github.com>
 2023-12-18 22:24:15 -06:00
dependabot[bot]
6a19cf1b42 build(deps): bump docker/metadata-action from 5.3.0 to 5.4.0 (#41764) 
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.3.0 to 5.4.0.
- [Release notes](https://github.com/docker/metadata-action/releases)
- [Commits](31cebacef4...9dc751fe24)

---
updated-dependencies:
- dependency-name: docker/metadata-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-18 16:31:02 -08:00
Thomas Madlener
ef4274ed2e podio: Add latest tag 0.17.4 (#41735) 2023-12-18 22:37:00 +01:00
dependabot[bot]
88b8fc63ef build(deps): bump isort in /.github/workflows/style (#41650) 
Bumps [isort](https://github.com/pycqa/isort) from 5.12.0 to 5.13.2.
- [Release notes](https://github.com/pycqa/isort/releases)
- [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md)
- [Commits](https://github.com/pycqa/isort/compare/5.12.0...5.13.2)

---
updated-dependencies:
- dependency-name: isort
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-18 10:23:51 -08:00
dependabot[bot]
639a6a6897 build(deps): bump isort from 5.12.0 to 5.13.2 in /lib/spack/docs (#41651) 
Bumps [isort](https://github.com/pycqa/isort) from 5.12.0 to 5.13.2.
- [Release notes](https://github.com/pycqa/isort/releases)
- [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md)
- [Commits](https://github.com/pycqa/isort/compare/5.12.0...5.13.2)

---
updated-dependencies:
- dependency-name: isort
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-18 10:23:18 -08:00
Massimiliano Culpo
af96fef1da spack.config: cleanup and add type hints (#41741) 2023-12-18 17:05:36 +01:00
Michael Kuhn
7550a41660 gcc: fix run environment variables not being exported in environments (#41729) 
Since views use symlinks, all compiler binaries were skipped in this
case. Instead, only skip them if their target does not exist.
 2023-12-18 16:19:38 +01:00
Mikael Simberg
ffd2a34d9e pika-algorithms: Add upper bound for pika version (#41736) 2023-12-18 15:12:36 +01:00
Michael Kuhn
6a74a82e19 glib: add v2.78.3 (#41697) 2023-12-18 10:06:23 +01:00
Harmen Stoppels
ebb7c5ac8f asp.py: remove "CLI" reference (#41718) 
Can also be an environment root, or programatically
`Spec("x").concretized()`.
 2023-12-18 09:52:12 +01:00