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Author SHA1 Message Date
Glenn Johnson
e0549f5e88 ncbi-rmblastn: add v2.11.0 (#22788) 2021-04-22 05:20:51 +02:00
Jen Herting
5bec197de1 New package: r-assertive-files (#23183) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:24:22 -05:00
Jen Herting
ae045ac071 New package: r-assertive-matrices (#23184) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:20:36 -05:00
Jen Herting
da520d7bb3 New package: r-assertive-datetimes (#23180) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:18:45 -05:00
Harmen Stoppels
730fbae463 Disable multithreaded version of zstd by default (#23167) 
* Disable multithreaded version of zstd by default

* zstd pthreads by default again! but configurable, and turned off in GCC
 2021-04-21 22:17:08 +02:00
Jen Herting
ee76c329f8 New package: r-assertive-numbers (#23181) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 19:30:31 +00:00
Sergei Shudler
75fd886f62 MAGMA: Add e4s testsuite-inspired smoke test (#23011) 2021-04-21 11:12:59 -07:00
Massimiliano Culpo
d670f3aa40 lbann: remove deprecated variants in opencv (#23176) 2021-04-21 17:28:33 +00:00
Cameron Stanavige
0ea1b9705f axl: add version 0.4.0 (#23044) 
* Swap .zip downloads with .tar.gz downloads (and update download
  hashes)
* New variants: intel_cppr and bbapi_fallback support
 2021-04-21 10:24:30 -07:00
Cameron Stanavige
44d995b6d5 unifyfs: add version 0.9.2 (#22390) 
UnifyFS has been integrated with updated versions of its mochi-margo
dependency (and mochi-margo's mercury and libfabric dependencies).

This removes support for version 0.9.0
 2021-04-21 10:20:41 -07:00
Harmen Stoppels
febeca2b05 Fix GCC with zstd on CCentOS 7 where it doesn't consider the lib64 directory (#23169) 2021-04-21 10:25:14 -06:00
Cyrus Harrison
a97ef832d9 conduit package: avoid issue with subclass case (#23156) 
* avoid issue with subclass case

* catch named exception
 2021-04-21 10:21:21 -05:00
Adam J. Stewart
8182994cee OpenCV: overhaul package (#22340) 2021-04-21 03:01:04 -06:00
Massimiliano Culpo
3325eff486 ASP-based solve: minimize compiler mismatches (#23016) 
fixes #22718

Instead of trying to maximize the number of
matches (preferred behavior), try to minimize
the number of mismatches (unwanted behavior).
 2021-04-21 01:02:43 -07:00
Massimiliano Culpo
9a473d6ab3 ASP-based solver: suppress warnings when constructing facts (#23090) 
fixes #22786

Trying to get optimization flags for a specific target from
a compiler may trigger warnings. In the context of constructing
facts for the ASP-based solver we don't want to show these
warnings to the user, so here we simply ignore them.
 2021-04-21 01:02:10 -07:00
Brian Van Essen
4ee3934fb3 lbann: requirements of the new variants for the legacy versions (#23159) 
Fixed the range of conduit for legacy versions of LBANN.
 2021-04-20 18:33:05 -07:00
Chris White
58a897be0e check for package in spec not variant (#23157) 2021-04-20 18:13:15 -06:00
Glenn Johnson
09e80604f5 Catch rstudio based URL for cran attribute in create.py (#23072) 2021-04-20 19:03:42 -05:00
Brian Van Essen
fd9918ab6f Removed unnecessary code to put cuda_arch in DiHydrogen (#23158) 
These were deprecated when the custom cuda_arch list was
removed.  Also fixed up the Aluminum dependencies for Hydrogen and
DiHydrogen.  Turns out that Aluminum v0.6.0 didn't have a correct
version in CMake and thus the interaction with older versions of
Hydrogen and DiHydrogen needed to be corrected.
 2021-04-20 16:54:12 -07:00
Mansour Moufid
73d1c0911c libsigsegv: update to version 2.13. (#23155) 2021-04-20 22:39:10 +00:00
Vanessasaurus
b9a2b1c096 Fixing typo tty.fail -> tty.die and monitor docstrings (#23152) 
This isn't a significant issue, but I noticed that the docstring incorrectly references "tty.fail" and I wanted to quickly fix it to reflect the correct command, tty.die. I also wanted to fix the docstrings to not be large clumps, to what @tgamblin suggested after I wrote this - having one line at the top that is a quick summary, and more verbose after that.
 2021-04-20 14:53:30 -07:00
Ethan Stam
293c8bf621 Use xz instead of lzma. XZ utils provides lzma dev files (#23144) 2021-04-20 15:39:47 -04:00
Cameron Stanavige
5931995364 redset: add versions 0.0.5 and 0.0.4 (#22977) 
Also update the url and hash of v0.0.3.
 2021-04-20 12:04:58 -07:00
Cameron Stanavige
f4d8382a4f shuffile: add version 0.0.4 (#22976) 
Also update the url and hash for v0.0.3.
 2021-04-20 12:03:58 -07:00
KoyamaSohei
fa06dbb324 New package: pmemkv 2021-04-20 11:52:36 -07:00
Sinan
d0dcde7c69 Package libsecret: turn off gobj variant by default (#23070) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2021-04-20 11:49:05 -07:00
miheer vaidya
58789130a8 emacs package: add version @master (#23075) 2021-04-20 11:37:38 -07:00
Shintaro Iwasaki
a42c11ff0b argobots: support new variants (#23133) 2021-04-20 18:23:30 +00:00
iarspider
0fec636bf4 oracle-instant-client package: add dependency on libaio (#23080) 2021-04-20 11:22:51 -07:00
Massimiliano Culpo
750fa8d810 etsf-io: added missing mpi variant (#23083) 
The variant was mentioned in a depends_on directive,
but never declared
 2021-04-20 11:21:30 -07:00
Massimiliano Culpo
67afe7016f angsd: fix typo in variants (#23081) 2021-04-20 11:20:23 -07:00
Massimiliano Culpo
7dc9a0082b geopm: remove reference to nonexistent variant (#23084) 2021-04-20 11:19:29 -07:00
Glenn Johnson
afd69866d1 New package: r-mcmcpack (#23139) 2021-04-20 11:17:49 -07:00
Glenn Johnson
25a9a40a12 New package: r-missmethyl (#23140) 2021-04-20 11:16:59 -07:00
Glenn Johnson
639d66720f New package: r-projpred (#23141) 2021-04-20 11:15:40 -07:00
Massimiliano Culpo
8058aecd2a lammps: fix typo in variant name (#23085) 
In two conflicts we used +adios instead of +user-adios
 2021-04-20 11:55:29 -06:00
Brian Van Essen
5461411f21 Set the minimum version of NCCL for aluminum (#23135) 2021-04-20 09:49:13 -07:00
Glenn Johnson
7925705d1d r-experimenthub: new package (#23095) 2021-04-20 10:31:11 -06:00
Ryan Marcellino
f1d66b767d add py-setuptools dependency (#23120) 2021-04-20 11:13:42 -05:00
Tom Payerle
0c0fa26b4c New package: py-pymumps (#19526) 
* New package: py-pymumps

Python bindings for MUMPS, a parallel sparse direct solver

* py-pymumps: fixing flake issues

* py-pymumps: fix dependency types

Following suggestion of @adamjstewart

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-04-20 11:12:13 -05:00
Matthieu Dorier
448ac2c68d json-c: added two versions and converted to cmake package (#23129) 2021-04-20 14:05:06 +02:00
Glenn Johnson
c10944e8fd r-bayesplot: new package (#23091) 2021-04-20 11:36:48 +02:00
Glenn Johnson
e005250555 r-illuminahumanmethylation450kmanifest: new package (#23100) 2021-04-20 03:36:32 -06:00
Glenn Johnson
89838bae1d r-champdata: new package (#23093) 2021-04-20 11:36:08 +02:00
Glenn Johnson
7b54389e12 r-compquadform: new package (#23094) 2021-04-20 11:35:47 +02:00
Glenn Johnson
5a3a014aae r-illumina450probevariants-db: new package (#23099) 2021-04-20 03:35:30 -06:00
Glenn Johnson
cbf7ad8cc0 r-fastica: new package (#23096) 2021-04-20 11:35:03 +02:00
Glenn Johnson
80e60ceb91 r-gamm4: new package (#23097) 2021-04-20 11:34:38 +02:00
Glenn Johnson
6cf91449d4 r-globaltest: new package (#23098) 2021-04-20 11:34:13 +02:00
Glenn Johnson
ba9eb19e5d r-illuminahumanmethylationepicanno-ilm10b4-hg19: new package (#23101) 2021-04-20 11:31:05 +02:00