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Author SHA1 Message Date
Adam J. Stewart
958d542f81 GDAL: add v3.6.1 (#34556) 2022-12-16 10:32:54 -08:00
Vicente Bolea
b1aae1c2ed vtk-m: add v2.0.0-rc1 (#34561) 2022-12-16 10:31:10 -08:00
SXS Bot
690f9d69fe spectre: add v2022.12.16 (#34570) 
* spectre: add v2022.12.16
* [@spackbot] updating style on behalf of sxs-bot

Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2022-12-16 11:27:56 -07:00
Marc Joos
a78c16a609 add version 3.6.4 to wi4mpi (#34565) 2022-12-16 10:26:46 -08:00
snehring
7bb2d3cca3 nwchem: restricting current versions to python@3.9 at latest (#34506) 2022-12-16 17:20:19 +01:00
Paul Kuberry
7216050dd3 libzmq: make location of libsodium explicit (#34553) 2022-12-15 16:17:15 -07:00
eugeneswalker
2f26e422d6 nco: add v5.0.6 (#34512) 2022-12-15 15:42:13 -07:00
Brian Van Essen
3477d578a3 roctracer: fixed a bug in how the external is identified (#33517) 
Make the package a proper ROCm package.
 2022-12-15 23:29:36 +01:00
Zack Galbreath
aa8e1ba606 gitlab ci: more resources for slow builds (#34505) 2022-12-15 14:35:54 -07:00
Manuela Kuhn
08e007e9a6 py-traits: add 6.4.1 (#34550) 2022-12-15 13:10:16 -06:00
eugeneswalker
d6fb65ebc6 eckit: add v1.19.0 (#34510) 2022-12-15 10:38:24 -08:00
eugeneswalker
2b5be919dd odc: add v1.4.5 (#34513) 2022-12-15 10:38:06 -08:00
Sebastian Grimberg
cc2dff48a8 arpack-ng: add variant for ISO C binding support (#34529) 
Co-authored-by: Sebastian Grimberg <sjg@amazon.com>
 2022-12-15 10:56:13 -07:00
Massimiliano Culpo
22922bf74c Propagate exceptions from Spack python console (#34547) 
fixes #34489

Customize sys.excepthook to raise SystemExit when
any unhandled exception reaches the hook.
 2022-12-15 18:08:53 +01:00
Sean Koyama
8a02463d7d IntelOneApiPackage: add envmods variant to toggle environment modifications by oneapi packages (#34253) 
Co-authored-by: Sean Koyama <skoyama@anl.gov>
Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
 2022-12-15 17:52:09 +01:00
Harmen Stoppels
c6465bd9bd Add a proper deprecation warning for update-index -d (#34520) 2022-12-15 17:45:32 +01:00
Harmen Stoppels
9025caed6e Remove warning in download_tarball (#34549) 2022-12-15 14:03:30 +00:00
Massimiliano Culpo
7056a4bffd Forward lookup of the "run_tests" attribute (#34531) 
fixes #34518

Fix an issue due to the MRO chain of the package wrapper
during build. Before this PR we were always returning
False when the builder object was created before the
run_tests method was monkey patched.
 2022-12-15 09:35:33 +01:00
snehring
d2aa8466eb metabat: adding missing build dependency (#34530) 2022-12-15 09:23:59 +01:00
Loïc Pottier
6e4684fbca talass: fixed URLs so the package is reachable (#34387) 
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
 2022-12-15 09:23:05 +01:00
Brian Vanderwende
fcbf617d38 ncl: add RPC lib with ncl+hdf4 (#34451) 2022-12-15 09:22:00 +01:00
downloadico
1f8b55a021 Add G'MIC package with only the "cli" target available (#34533) 2022-12-15 09:19:50 +01:00
David Gardner
b5f8ed07fb sundials: fix typo in smoke tests (#34539) 2022-12-15 09:07:54 +01:00
Thomas Madlener
65bd9b9ac5 podio, edm4hep: add v0.7.2 and v0.16.1 respectively (#34526) 
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-12-15 09:02:16 +01:00
Adam J. Stewart
6250d84b41 cpuinfo: new versions, shared libs (#34544) 2022-12-15 09:00:51 +01:00
Wouter Deconinck
99056e03bd acts: new versions 19.11.0, 21.0.0, 21.1.0 (#34540) 
* acts: new versions 19.11.0, 21.0.0, 21.1.0

https://github.com/acts-project/acts/compare/v19.10.0...v19.11.0:
- python 3.8 required if ACTS_BUILD_EXAMPLES_PYTHON_BINDINGS

https://github.com/acts-project/acts/compare/v20.3.0...v21.0.0:
- python 3.8 required if ACTS_BUILD_EXAMPLES_PYTHON_BINDINGS

https://github.com/acts-project/acts/compare/v21.0.0...v21.1.0:
- no build system changes

* acts: depends_on python@3.8: when sometimes
 2022-12-15 08:56:32 +01:00
Fabien Bruneval
1db849ee5f libcint: Fix +coulomb_erf and add +pypzpx (#34524) 2022-12-15 05:31:58 +01:00
Thomas Madlener
2f82b213df lcio: add latest version (#34527) 2022-12-15 05:06:59 +01:00
Axel Huebl
2a5f0158bc ParaView: Add openPMD Support (#33821) 
openPMD, a metadata standard on top of backends like ADIOS2 and HDF5,
is implemented in ParaView 5.9+ via a Python3 module.

Simplify Conflicts & Variant

Add to ECP Data Vis SDK
 2022-12-14 20:45:27 -07:00
Manuela Kuhn
21a1f7dd97 py-traitlets: add w5.7.1 (#34525) 2022-12-14 21:34:51 -06:00
David Boehme
4b5ed94af4 caliper: add version 2.9.0 (#34538) 2022-12-15 03:52:53 +01:00
snehring
06788019a4 apptainer: add new version 1.1.4 (#34536) 2022-12-15 02:06:22 +01:00
Sam Grayson
cab8f795a7 Patch dill._dill._is_builtin_module (#34534) 
* Patch dill._dill._is_builtin_module

* Fix style

* Add test
 2022-12-14 16:03:03 -07:00
finkandreas
2db38bfa38 py-archspec: replace removed .build_directory with .stage.source_path (#34521) 2022-12-15 00:00:21 +01:00
Harmen Stoppels
ea029442e6 Revert "Revert "Use urllib handler for s3:// and gs://, improve url_exists through HEAD requests (#34324)"" (#34498) 
This reverts commit 8035eeb36d.

And also removes logic around an additional HEAD request to prevent
a more expensive GET request on wrong content-type. Since large files
are typically an attachment and only downloaded when reading the
stream, it's not an optimization that helps much, and in fact the logic
was broken since the GET request was done unconditionally.
 2022-12-14 23:47:11 +01:00
Axel Huebl
43e38d0d12 WarpX 22.11, 22.12 & PICMI-Standard (#34517) 
* PICMI: 0.0.22

* WarpX: 22.11, 22.12
 2022-12-14 13:59:16 -08:00
Marco De La Pierre
2522c8b754 edits to 8x existing recipes, mostly new versions, plus two dependency fixes (#34516) 2022-12-14 12:28:33 -07:00
Marco De La Pierre
f64cb29aea Nextflow, Tower Agent, Tower CLI: updates (#34515) 
* renamed tower-agent and tower-cli with prefif nf-

* new nextflow package version

* added newest versions (today) for nf-tower-agent and nf-tower-cli
 2022-12-14 11:44:22 -07:00
Erik Heeren
80e30222e1 New neuroscience packages: py-bmtk, py-neurotools (#34464) 
* Add py-bmtk and py-neurotools

* py-bmtk: version bump

* [@spackbot] updating style on behalf of heerener

* Maybe the copyright needs to be extended to 2022 for the check to pass

* Process review remarks

* Update var/spack/repos/builtin/packages/py-neurotools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-12-14 12:00:26 -06:00
eugeneswalker
55356e9edb bufr: add v11.6, 11.7, 11.7.1 (#34509) 2022-12-14 06:24:26 -07:00
eugeneswalker
eec09f791d fms: add v2019.01.03 (#34511) 2022-12-14 04:50:00 -07:00
Harmen Stoppels
9032179b34 Use update-index --mirror-url <url> instead of -d <url> (#34519) 2022-12-14 10:03:18 +01:00
Alberto Sartori
45b40115fb justbuild: add v1.0.0 (#34467) 2022-12-14 01:17:42 -07:00
snehring
e030833129 r-rgdal: adding new version 1.6-2 (#34502) 2022-12-13 20:06:31 -07:00
Harmen Stoppels
e055dc0e64 Use file paths/urls correctly (#34452) 
The main issue that's fixed is that Spack passes paths (as strings) to
functions that require urls. That wasn't an issue on unix, since there
you can simply concatenate `file://` and `path` and all is good, but on
Windows that gives invalid file urls. Also on Unix, Spack would not deal with uri encoding like x%20y for file paths. 

It also removes Spack's custom url.parse function, which had its own incorrect interpretation of file urls, taking file://x/y to mean the relative path x/y instead of hostname=x and path=/y. Also it automatically interpolated variables, which is surprising for a function that parses URLs.

Instead of all sorts of ad-hoc `if windows: fix_broken_file_url` this PR
adds two helper functions around Python's own path2url and reverse.

Also fixes a bug where some `spack buildcache` commands
used `-d` as a flag to mean `--mirror-url` requiring a URL, and others
`--directory`, requiring a path. It is now the latter consistently.
 2022-12-13 23:44:13 +01:00
Matthias Wolf
c45729cba1 py-submitit: add 1.4.5 (#34460) 2022-12-13 16:11:14 -06:00
Manuela Kuhn
b02b2f0f00 py-tifffile: add 2022.10.10 (#34499) 2022-12-13 16:09:01 -06:00
Manuela Kuhn
3ded50cc8c py-sphinxcontrib-qthelp: add 1.0.3 (#34495) 2022-12-13 16:08:06 -06:00
Manuela Kuhn
a7280cd5bb py-sqlalchemy: add 1.4.45 (#34497) 2022-12-13 16:07:34 -06:00
Paul Kuberry
2837b47ea5 trilinos: extend range of Teuchos patch (#34504) 2022-12-13 14:49:20 -07:00