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Author SHA1 Message Date
Adam J. Stewart
c6842605ac py-pytorch-lightning: add v1.7.3 (#32383) 2022-08-25 18:01:50 -06:00
snehring
4d10cdb7e8 phylip: adding workarounds for gcc10+ (#32376) 
* phylip: adding workarounds for gcc10+

* phylip: switch to spec.satisfies
 2022-08-25 16:29:40 -06:00
Massimiliano Culpo
1bffa46d4d zig: add v0.9.1 (#32380) 2022-08-25 14:38:26 -07:00
Richard Berger
6e420c3556 charliecloud: add versions 0.28 and 0.29 (#32378) 2022-08-25 13:21:27 -07:00
Ryan Marcellino
a476f0fa59 New package: py-mkdocs (#32363) 2022-08-25 12:37:20 -07:00
AMD Toolchain Support
6fb13c0fc5 fixed cp2k libcp2k.pc (#32349) 
Co-authored-by: Prasanthi <pdonthir@amd.com>
 2022-08-25 12:01:02 -07:00
Glenn Johnson
c2291f7eb3 new packages: r-cmdstanr and cmdstan (#32364) 2022-08-25 11:58:31 -07:00
Glenn Johnson
925a99a043 new package: r-glmgampoi (#32366) 
* new package: r-glmgampoi

* Remove duplicate depends_on directive
 2022-08-25 11:50:11 -07:00
Glenn Johnson
883b96aeb5 new packages: r-scdblfinder and dependencies (#32367) 
- r-bluster
- r-metapod
- r-scran
 2022-08-25 11:47:12 -07:00
Matthieu Dorier
9204bd6204 [ycsb] fixes build process and installation of YCSB (#32213) 
* [ycsb] fixes build process and installation of YCSB

* [ycsb] fixing style

* [ycsb] removed extra newline
 2022-08-25 11:26:08 -07:00
Wileam Y. Phan
b482c71b43 New package: glab (#32251) 2022-08-25 11:23:15 -07:00
robgics
ff2874333d ddt: Initial commit (#32338) 
* ddt: Initial commit

* ddt: Minor change to license date to appease the CI gods

* Get rid of unattractive extra line

* Switch to sha256 instead of md5
 2022-08-25 11:03:07 -07:00
Robert Pavel
7214a438dc Adding e3sm-kernels to Spack (#32341) 
* Initial Draft of E3SM-Kernels Spackage

Initial draft of E3SM-Kernels. Currently no support for nested_loops due
to build system limitations

* Style Check and Fixed gfortran Check

Fixed style issues and changed gnu toolchain check to a gfortran check
due to hybrid compilers (e.g. clang+gfortran)

* Fixed Style Issues
 2022-08-25 11:01:07 -07:00
Lucas Frérot
06ba4d5c28 lammps: added build dependency to py-setuptools (#32351) 
LAMMPS' setup.py uses setuptools as of lammps/lammps@2ed8e5cf02
 2022-08-25 10:40:07 -07:00
Mikael Simberg
1c3979dcfa Add patch for missing template instantiation in pika 0.7.0 on macOS (#32370) 2022-08-25 11:30:00 -06:00
Melven Roehrig-Zoellner
f0925e1823 tixi: new variants (fortran,shared) (#32356) 
* tixi: new variants (fortran,shared)

Since some tixi 3 versions, additional CMake flags are needed to build
tixi with shared libraries, respectively with Fortran support.

* tixi: fix style
 2022-08-25 10:27:00 -07:00
snehring
ba87413eeb snap-berkeley: update to version 2.0.1 (#32358) 2022-08-25 10:21:53 -07:00
Tyler Funnell
a4cbdba388 fish: adding v3.5.1 (#32362) 2022-08-25 10:18:39 -07:00
snehring
70388da974 libfabric: adding missing dep for opx fabric (#32377) 2022-08-25 10:10:30 -07:00
Sreenivasa Murthy Kolam
f0df4b653d Changes for ROCm-5.2.0 changes and new recipe rocwmma (#31667) 
* Changes for ROCm-5.2.0 changes and new recipe rocwmma

* modify the maintainers for hipify-clang

* address review comments

* update the rocwmma new recipe as per latest syntax

* fix style errors

* modify the patch file to provide the details about the patch

* fix style errors
 2022-08-25 10:00:02 -07:00
Adam J. Stewart
507e06b5d2 Python: add new maintainer (#31755) 2022-08-25 09:46:09 -07:00
H. Joe Lee
c8f8b6957d libfabric: Match main version. (#32342) 
* Match main version.

`develop` no loger exists.

* Change develop to main.
 2022-08-25 09:25:43 -07:00
robgics
10ac24874b cplex: add package.py (#32337) 
* cplex: add package.py

* Update var/spack/repos/builtin/packages/cplex/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-08-25 09:11:40 -07:00
Massimiliano Culpo
8654197c56 ASP-based solver: prevent the use of hashes that are not available (#32354) 
fixes #32348
 2022-08-25 17:55:58 +02:00
Dom Heinzeller
b332c1055c Update ESMF: bug fix for esmf@8.3.0b09 with PIO (#32360) 2022-08-25 08:52:54 -07:00
Christian Mauch
7e0d8fce89 py-pynn: add version 0.10.0 (#32307) 2022-08-25 08:02:52 -07:00
Robert Cohn
c56abe4247 oneapi e4s: use require: to force gcc build for some packages (#32309) 2022-08-24 16:22:02 -04:00
Graeme A Stewart
ee02623171 whizard: Fix passing of build options, update versions (#32326) 
* whizard: Fix passing of build options, update versions

The dependency of whizard on libtirpc is now correctly passed down as
an autotools option.

Update known versions of package with 3.0.2 and 3.0.3.

* Express path to headers via spec object methods
 2022-08-24 06:58:48 -07:00
otsukay
6fa6b8a903 fujitsu-fftw: add option for enabling thread support (#31426) 
Co-authored-by: Yuichi Otsuka <otsukay@riken.jp>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: otsukay <otsukay@users.noreply.github.com>
 2022-08-24 11:36:14 +02:00
Atsushi Hori
14e99a1a5d process-in-process: overhaul package recipe (#32347) 2022-08-24 11:35:08 +02:00
Massimiliano Culpo
e2468c8928 Allow default requirements in packages.yaml (#32260) 
Allow users to express default requirements in packages.yaml. 

These requirements are overridden if more specific requirements
are present for a given package.
 2022-08-24 09:33:55 +02:00
Ryan Marcellino
b4df535e8d New package: py-mkdocs-material-extensions (#32334) 2022-08-23 23:29:56 -06:00
Ryan Marcellino
af4788fdef New package: py-griffe and new build backend: py-pdm-pep517 (#32335) 
* New package: py-griffe and new build backend: py-pdm-pep517

* add pdm to build backend docs
 2022-08-23 23:23:23 -05:00
Cyrus Harrison
a2bdbfcd24 add conduit 0.8.4 release (#32343) 2022-08-23 21:33:49 -06:00
Ben Darwin
3fb7fdfc58 minc-toolkit: add runtime flex dependency (#32345) 
Some programs such as `minccalc` depend on libfl.so at runtime.
 2022-08-23 17:14:07 -06:00
Timothy Brown
7e87c208ba [WRF] Version update to 4.4 (#32046) 
* [WRF] Update to version 4.4.

* [WRF] Patches for v4.4.

* Fixing style.

* [@spackbot] updating style on behalf of t-brown
 2022-08-23 13:47:23 -07:00
Jim Galarowicz
f8ae2ef8b4 Add new package for MUST runtime correctness analysis tool (#32329) 
* Add new package for MUST runtime correctness analysis tool

* Fix encryption to SHA256 to fix with spack convention.
 2022-08-23 20:43:55 +00:00
Ryan Marcellino
b238a9a457 New package: py-pyyaml-env-tag (#32333) 2022-08-23 12:55:53 -07:00
Harmen Stoppels
8af3743e91 Relative paths in default prefix_inspections start with ./ (#31867) 2022-08-23 12:54:12 -07:00
Harmen Stoppels
707a099b69 spack -e x config --scope=y add z add to scope (#31746) 
* `spack -e x config --scope=y add z` add to scope

instead of to the environment file.
 2022-08-23 12:52:34 -07:00
iarspider
2b680ae7b8 cpu-features: fix fetch failure (#32325) 
* cpu-features: fix fetch failure

`master` branch was renamed to `main`

* Update var/spack/repos/builtin/packages/cpu-features/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-08-23 12:37:59 -07:00
Robert Cohn
6654d53611 intel-oneapi-compilers-classic: fix paths (#32305) 
* Fix intel-oneapi-compilers-classic bin path

* Update package.py

* intel-oneapi-compilers-classic fix path

Co-authored-by: OfirGan <offirgan@gmail.com>
 2022-08-23 12:14:24 -07:00
Ben Darwin
9b6b1a277d minc-toolkit: add MINC_TOOLKIT environment variable at runtime (#32331) 
This variable is used by some programs both internal and external to the
toolkit itself to discover shared objects, data, etc.
 2022-08-23 11:03:12 -07:00
Toyohisa Kameyama
a08d6e790d py-scipy: Fortran compiler specify code is change to setup.cfg for Fujitsu compiler (#32142) 
* py-numpy: Change Fortran detect order for Fujitsu Compiler.

* create setup.cfg instead of command line.
 2022-08-23 10:06:49 -07:00
Jen Herting
00feccde34 New package: py-loguru (#32074) 
* [py-loguru] New package

* [py-loguru] Removed commented out line

* [py-loguru] Added types removed extra dependencies

* [py-loguru] missing windows dependency. listing windows as a conflict for now

* [py-loguru] depends on py-colorama when platform=windows

* [py-loguru] flake8

* [py-loguru] Import update

* [py-loguru]

- python is a runtime dependency
- setuptools is a build dependency

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-23 10:00:25 -07:00
Jen Herting
2c567edc1d New package: py-python-javabridge (#32075) 
* [py-python-javabridge] New package

* [py-python-javabridge] Added dependencies

* [py-python-javabridge] Added types

* [py-python-javabridge] py-setuptools and java are dependencies

* [py-python-javabridge] Import update

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-08-23 09:59:09 -07:00
Martin Pokorny
51293f3750 libfabric: new versions (#32083) 
* libfabric: add new versions

1.15.0, 1.15.1, main (previously named master)

* Add OPX fabric option, with conflict for versions before v1.15.0

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-08-23 10:33:49 -06:00
kwryankrattiger
b7024010d3 SDK: Quick fix to allow SDK to build with HIP (#32321) 2022-08-23 07:09:56 -07:00
Simon Pintarelli
44258a7cce meson: create unique names for build directory (#32062) 
Taken from CMakePackage
 2022-08-23 13:24:32 +02:00
Seth R. Johnson
0f25d3b219 Add cxxstd flag to googletest and default mock to true (#32171) 2022-08-23 13:05:03 +02:00