Commit Graph

1155 Commits

Author SHA1 Message Date
dependabot[bot]
d6419f32b8 build(deps): bump mypy from 1.10.0 to 1.10.1 in /lib/spack/docs (#44885)
Bumps [mypy](https://github.com/python/mypy) from 1.10.0 to 1.10.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.10.0...v1.10.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2024-06-27 12:40:14 +02:00
Miguel
60ed682577 Fix typo in docs (#44891)
Fixes on the rst formatting of the make_jobs
2024-06-27 12:32:16 +02:00
Wouter Deconinck
f916b50491 containers: centos:stream -> centos:stream9 (#44876) 2024-06-27 10:38:56 +02:00
Tamara Dahlgren
baf82c0245 Docs: Update stand-alone test information (#44755)
Update and slightly reorganize stand-alone test information to include new and improved examples and more links that can be used in PR feedback.
2024-06-25 13:33:41 -07:00
Miguel
536856874c add documentation for make_jobs variable (#44838)
* add documentation for make_jobs variable

* apply suggested changes

* Update packaging_guide.rst

add suggestions to the documentation

* Update packaging_guide.rst

fix missing quotes in the documentation

* suggestions to packaging_guide.rst
2024-06-25 11:24:49 -06:00
dependabot[bot]
a82fb33b31 build(deps): bump flake8 from 7.0.0 to 7.1.0 in /lib/spack/docs (#44752) 2024-06-18 08:27:15 +02:00
dependabot[bot]
5f35a90529 build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /lib/spack/docs (#44751) 2024-06-18 08:27:04 +02:00
dependabot[bot]
f80287166e build(deps): bump sphinx-design from 0.5.0 to 0.6.0 in /lib/spack/docs (#44360)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.5.0 to 0.6.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.5.0...v0.6.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2024-06-06 14:34:59 +02:00
dependabot[bot]
a20d34b8aa build(deps): bump pytest from 8.2.1 to 8.2.2 in /lib/spack/docs (#44553)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.1...8.2.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-06-06 08:38:54 +02:00
Massimiliano Culpo
f242e0fd0c remove platform=cray (#43796)
Remove support for `cray` as a separate platform.

Any platform previously detected as `cray` is now detected as `linux`.

Users who still need platform=cray have to stick to Spack 0.22
2024-05-30 14:21:32 +02:00
mSamiolo
b9816a97fc docs: update chain.rst to improve discussion of upstreams (#43918)
* Update chain.rst

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* docs: rm leading spaces to avoid indent

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-22 22:04:53 +00:00
dependabot[bot]
86fb547f7c bump pytest from 8.2.0 to 8.2.1 --- (#44282)
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-05-21 13:42:22 +02:00
Todd Gamblin
77c83af17d docs: remove warning about repositories and package extension (#44247)
Local package repositories are very well supported and we test them extensively, so this
warning from 8 years ago can be removed from the docs.
2024-05-17 22:03:57 +00:00
Chris Marsh
24edc72252 docs: show phase signature for builders (#44067) 2024-05-17 18:16:31 +02:00
Andrew-Dunning-NNL
a24ca50fed Fix broken link in docs (#44217) 2024-05-17 12:58:11 +00:00
dependabot[bot]
8b4cbbe7b3 build(deps): bump pygments from 2.17.2 to 2.18.0 in /lib/spack/docs (#44044)
Bumps [pygments](https://github.com/pygments/pygments) from 2.17.2 to 2.18.0.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.17.2...2.18.0)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2024-05-07 18:55:04 +02:00
Richarda Butler
be71f9fdc4 Include concrete environments with include_concrete (#33768)
Add the ability to include any number of (potentially nested) concrete environments, e.g.:

```yaml
   spack:
     specs: []
     concretizer:
         unify: true
     include_concrete:
     - /path/to/environment1
     - /path/to/environment2
```

or, from the CLI:

```console
   $ spack env create myenv
   $ spack -e myenv add python
   $ spack -e myenv concretize
   $ spack env create --include-concrete myenv included_env
```

The contents of included concrete environments' spack.lock files are
included in the environment's lock file at creation time. Any changes
to included concrete environments are only reflected after the environment
is re-concretized from the re-concretized included environments.

- [x] Concretize included envs
- [x] Save concrete specs in memory by hash
- [x] Add included envs to combined env's lock file
- [x] Add test
- [x] Update documentation

    Co-authored-by: Kayla Butler <<butler59@llnl.gov>
    Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.co
m>
    Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
    Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-07 09:32:40 -07:00
psakievich
d22bdc1c4e certs: fix interpolation and disallow relative paths (#44030) 2024-05-07 11:16:32 +02:00
Harmen Stoppels
125206d44d python: always use a venv (#40773)
This commit adds a layer of indirection to improve build isolation with 
and without external Python, as well as usability of environment views.

It adds `python-venv` as a dependency to all packages that `extends("python")`, 
which has the following advantages:

1. Build isolation: only `PYTHONPATH` is considered in builds, not 
   user / system packages
2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where 
   external / system python produces `bin/local` subdirs in Spack install prefixes. 
3. Environment views are Python virtual environments (and if you add 
   `py-pip` things like `pip list` work)

Views work whether they're symlink, hardlink or copy type.

This commit additionally makes `spec["python"].command` return 
`spec["python-venv"].command`. The rationale is that packages in repos we do 
not own do not pass the underlying python to the build system, which could still 
result in incorrectly computed install layouts.

Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
2024-05-06 16:17:35 +02:00
Massimiliano Culpo
d654d6b1f4 Remove Fedora 37 and 38, Ubuntu 18 from CI (#44006) 2024-05-06 15:51:45 +02:00
Greg Becker
1f31c3374c External package detection for compilers (#43464)
This creates shared infrastructure for compiler packages to implement the 
detailed search capabilities from the `spack compiler find` command for the 
`spack external find` command.

After this commit, `spack compiler find` can be replaced with 
`spack external find --tag compiler`, with the exception of mixed toolchains.
2024-05-06 10:33:33 +02:00
Harmen Stoppels
715214c1a1 spack env create <env>: dir if dir-like (#44024)
A named env cannot contain `.` and `/`.

So when a user runs `spack env create ./here` do not error but treat it
as `spack env create -d ./here`.

Also fix help string of `spack env create`, which seems to have been
copied from `activate` incorrectly.
2024-05-06 02:00:23 -06:00
dependabot[bot]
b471d62dbd build(deps): bump black from 24.4.0 to 24.4.2 in /lib/spack/docs (#43878)
Bumps [black](https://github.com/psf/black) from 24.4.0 to 24.4.2.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.0...24.4.2)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-05-06 09:55:43 +02:00
dependabot[bot]
74fe498cb8 build(deps): bump mypy from 1.9.0 to 1.10.0 in /lib/spack/docs (#43834)
Bumps [mypy](https://github.com/python/mypy) from 1.9.0 to 1.10.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/1.9.0...v1.10.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-05-04 15:48:49 -07:00
Todd Gamblin
cc85dc05b7 docs: re-enable google analytics (#43974)
We recently switched to using the new ReadTheDocs with "addons". That includes its own
analytics, which is nice, but we also want to continue using our GA4 analytics.

Adding GA4 is no longer supported by RTD, so we have to add it manually.

- [x] re-add the gtag to all pages, manually

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-02 21:56:19 -04:00
John W. Parent
7e8415a3a6 Windows: auto-add WGL/SDK as externals (#43752)
Adds a pre-concretization check for the Windows SDK and WGL (Windows
GL) packages as non-buildable externals.

This is a redo of https://github.com/spack/spack/pull/43459, but makes
sure to modify the configuration scope outside of the bootstrap scope:
whichever is highest-precedence in the user's environment at the time
the concretization runs, which should either be an env scope or the
~ scope.

Adds pytest fixture mocking the check for WGL and WSDK as if they were
present.
2024-05-02 01:05:03 -06:00
Massimiliano Culpo
4e876b4014 Allow more control over which specs are reused (#42782)
This PR gives users finer control over which specs are reused during concretization.

The value of the `concretizer:reuse` config option now can take an object with the following properties:
- `roots`: true if reusing roots, false if reusing just dependencies
- `exclude`: list of constraints used to select reusable specs 
- `include`: list of constraints used to select reusable specs 
- `from`: allows to select the sources of reused specs

### Examples

#### Reuse only specs compiled with GCC
```yaml
concretizer:
  reuse:
    roots: true
    include:
    - "%gcc"
```

#### `openmpi` must be used from externals, and it must be the only external used
```yaml
concretizer:
  reuse:
    roots: true
    from:
    - type: local
      exclude:
      - "openmpi"
    - type: buildcache
      exclude:
      - "openmpi"
    - type: external
      include:
      - "openmpi"
```
2024-05-01 23:05:26 -04:00
Wouter Deconinck
067155cff5 containers: add ubuntu 24.04 (#43881)
* containers: add ubuntu 24.04

* containers: use python3-boto3 pkg instead of pip install
2024-05-01 13:37:13 +02:00
dependabot[bot]
be48f762a9 build(deps): bump pytest from 8.1.1 to 8.2.0 in /lib/spack/docs (#43908)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.1.1 to 8.2.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.2.0)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2024-05-01 13:29:22 +02:00
Jonathon Anderson
ae9f2d4d40 containers: Add Fedora 40, 39 (#43847) 2024-04-26 20:02:04 -05:00
Massimiliano Culpo
ac9012da0c spack audit externals: allow selecting platforms and checking extra attributes (#43782) 2024-04-26 12:47:17 +02:00
John W. Parent
641ab95a31 Revert "Windows: add win-sdk/wgl externals during bootstrapping (#43459)" (#43819)
This reverts commit 9e2558bd56.
2024-04-24 18:24:28 +02:00
Harmen Stoppels
01f61a2eba Remove import distro from packages and docs (#43772) 2024-04-23 12:47:33 +02:00
John W. Parent
9e2558bd56 Windows: add win-sdk/wgl externals during bootstrapping (#43459)
On Windows, bootstrapping logic now searches for and adds the win-sdk
and wgl packages to the user's top scope as externals if they are not
present.

These packages are generally required to install most packages with
Spack on Windows, and are only available as externals, so it is
assumed that doing this automatically would be useful and avoid
a mandatory manual step for each new Spack instance.

Note this is the first case of bootstrapping logic modifying
configuration other than the bootstrap configuration.
2024-04-18 10:20:04 -07:00
Tamara Dahlgren
36ea208e12 Twitter->X: Reflect the name (only) change (#43690) 2024-04-18 08:52:54 -07:00
dependabot[bot]
1a7baadbff build(deps): bump python-levenshtein in /lib/spack/docs (#43543)
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.25.0 to 0.25.1.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.25.0...v0.25.1)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-04-15 18:00:24 +02:00
dependabot[bot]
7903f9fcfd build(deps): bump black from 24.3.0 to 24.4.0 in /lib/spack/docs (#43642)
Bumps [black](https://github.com/psf/black) from 24.3.0 to 24.4.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.3.0...24.4.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-04-15 16:40:37 +02:00
Radim Janalík
d23e06c27e Allow packages to be pushed to build cache after install from source (#42423)
This commit adds a property `autopush` to mirrors. When true, every source build is immediately followed by a push to the build cache. This is useful in ephemeral environments such as CI / containers.

To enable autopush on existing build caches, use `spack mirror set --autopush <name>`. The same flag can be used in `spack mirror add`.
2024-04-11 19:43:13 -06:00
psakievich
7afa949da1 Add handling of custom ssl certs in urllib ops (#42953)
This PR allows the user to specify a path to a custom cert file (or directory) in
Spack's config:

```yaml
  # This is where custom certs for proxy/firewall are stored.
  # It can be a path or environment variable. To match ssl env configuration
  # the default is the environment variable SSL_CERT_FILE
  ssl_certs: $SSL_CERT_FILE
```

`config:ssl_certs` can be a path to a file or a directory, or it can be and environment
variable that resolves to one of those. When it posts to something valid, Spack will
update the ssl context to include custom certs, and fetching via `urllib` and `curl`
will trust the provided certs.

This should resolve many issues with fetching behind corporate firewalls.


---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Alec Scott <alec@bcs.sh>
2024-04-01 11:11:13 -07:00
Harmen Stoppels
c3eaf4d6cf Support for prereleases (#43140)
This adds support for prereleases. Alpha, beta and release candidate
suffixes are ordered in the intuitive way:

```
1.2.0-alpha < 1.2.0-alpha.1 < 1.2.0-beta.2 < 1.2.0-rc.3 < 1.2.0 < 1.2.0-xyz
```

Alpha, beta and rc prereleases are defined as follows: split the version
string into components like before (on delimiters and string boundaries).
If there's a string component `alpha`, `beta` or `rc` followed by an optional
numeric component at the end, then the version is prerelease.

So `1.2.0-alpha.1 == 1.2.0alpha1 == 1.2.0.alpha1` are all the same, as usual.

The strings `alpha`, `beta` and `rc` are chosen because they match semver,
they are sufficiently long to be unambiguous, and and all contain at least
one non-hex character so distinguish them from shasum/digest type suffixes.

The comparison key is now stored as `(release_tuple, prerelease_tuple)`, so in
the above example:

```
((1,2,0),(ALPHA,)) < ((1,2,0),(ALPHA,1)) < ((1,2,0),(BETA,2)) < ((1,2,0),(RC,3)) < ((1,2,0),(FINAL,)) < ((1,2,0,"xyz"), (FINAL,))
```

The version ranges `@1.2.0:` and `@:1.1` do *not* include prereleases of
`1.2.0`.

So for packaging, if the `1.2.0alpha` and `1.2.0` versions have the same constraints on
dependencies, it's best to write

```python
depends_on("x@1:", when="@1.2.0alpha:")
```

However, `@1.2:` does include `1.2.0alpha`. This is because Spack considers
`1.2 < 1.2.0` as distinct versions, with `1.2 < 1.2.0alpha < 1.2.0` as a consequence.

Alternatively, the above `depends_on` statement can thus be written

```python
depends_on("x@1:", when="@1.2:")
```

which can be useful too. A short-hand to include prereleases, but you
can still be explicit to exclude the prerelease by specifying the patch version
number.

### Concretization

Concretization uses a different version order than `<`. Prereleases are ordered
between final releases and develop versions. That way, users should not
have to set `preferred=True` on every final release if they add just one
prerelease to a package. The concretizer is unlikely to pick a prerelease when
final releases are possible.

### Limitations

1. You can't express a range that includes all alpha release but excludes all beta
   releases. Only alternative is good old repeated nines: `@:1.2.0alpha99`.

2. The Python ecosystem defaults to `a`, `b`, `rc` strings, so translation of Python versions to
   Spack versions requires expansion to `alpha`, `beta`, `rc`. It's mildly annoying, because
   this means we may need to compute URLs differently (not done in this commit).

### Hash

Care is taken not to break hashes of versions that do not have a prerelease
suffix.
2024-03-22 23:30:32 +01:00
Pieter P
429c3598af Fix CMake generator documentation (#43232) 2024-03-18 10:02:33 +01:00
dependabot[bot]
96061d2c00 build(deps): bump black from 24.2.0 to 24.3.0 in /lib/spack/docs (#43228)
Bumps [black](https://github.com/psf/black) from 24.2.0 to 24.3.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.2.0...24.3.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-03-15 17:24:44 -06:00
Greg Becker
59c7ff8683 Allow compilers to be configured in packages.yaml (#42016)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2024-03-15 11:01:49 +01:00
dependabot[bot]
cc28334049 build(deps): bump pytest from 8.0.2 to 8.1.1 in /lib/spack/docs (#43134)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.2 to 8.1.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.0.2...8.1.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-03-14 07:40:15 +01:00
Tamara Dahlgren
1e9c46296c perl testing: refactor stand-alone testing into base class (#43044) 2024-03-12 15:39:18 +01:00
dependabot[bot]
1e413477dd build(deps): bump mypy from 1.8.0 to 1.9.0 in /lib/spack/docs (#43103)
Bumps [mypy](https://github.com/python/mypy) from 1.8.0 to 1.9.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.8.0...1.9.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-03-10 18:54:58 -07:00
runiq
82c380b563 Fix spack find bootstrapping docs (#43074)
Closes #43052.

Maybe moving the argument to the `find` subcommand is a good idea, but I
just wanted to get the docs fix out.

Co-authored-by: Patrice Peterson <patrice.peterson@itz.uni-halle.de>
2024-03-07 14:13:32 +01:00
Tim Fuller
7e468aefd5 Allow loading extensions through python entry-points (#42370)
This PR adds the ability to load spack extensions through `importlib.metadata` entry 
points, in addition to the regular configuration variable.

It requires Python 3.8 or greater to be properly supported.
2024-03-06 11:18:49 +01:00
psakievich
d6fd9017c4 Document new environment variable expansion in projections (#42963)
Adding docs and test for #42917

Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-03-04 12:17:08 -07:00
Harmen Stoppels
5d994e48d5 modules: allow autoload: run, like in environment views (#42743) 2024-03-04 08:49:45 +01:00