Commit Graph

7044 Commits

Author SHA1 Message Date
Massimiliano Culpo
c0f9f47b8c
Simplify and improve solver heuristic (#44893)
When we changed how to deal with errors in November,
we didn't realize that for an unconstrained choice
rule it is more important in the heuristic to guess
what is NOT in the answer set, since it will be the
majority of options.

Previously this was following automatically from what
was in the answer set, via `1 { ... } 1` cardinality
constraints.

Here we improve the heuristic and the solve time for specs.
2024-06-26 13:08:41 +02:00
psakievich
54d192e026
Steal source was not assigning the package class (#44886)
Fetcher was missing the package class assignment
2024-06-25 23:17:56 -07:00
Tamara Dahlgren
baf82c0245
Docs: Update stand-alone test information (#44755)
Update and slightly reorganize stand-alone test information to include new and improved examples and more links that can be used in PR feedback.
2024-06-25 13:33:41 -07:00
Miguel
536856874c
add documentation for make_jobs variable (#44838)
* add documentation for make_jobs variable

* apply suggested changes

* Update packaging_guide.rst

add suggestions to the documentation

* Update packaging_guide.rst

fix missing quotes in the documentation

* suggestions to packaging_guide.rst
2024-06-25 11:24:49 -06:00
Nicole C
d8b0df6f5b
Make url_fetch tests work on Windows (#44809) 2024-06-25 07:34:11 +00:00
Harmen Stoppels
0282fe9efd
spec_list: do not resolve abstract hashes (#44760) 2024-06-24 16:43:01 +02:00
Tamara Dahlgren
3848c41494
Bugfix: test_is_externally_detectable needs to use mockpackages (#44795) 2024-06-21 12:24:46 +02:00
Harmen Stoppels
f650133f83
build_environment: fix ccache error handling (#44740) 2024-06-20 11:16:24 +02:00
dependabot[bot]
a82fb33b31
build(deps): bump flake8 from 7.0.0 to 7.1.0 in /lib/spack/docs (#44752) 2024-06-18 08:27:15 +02:00
dependabot[bot]
5f35a90529
build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /lib/spack/docs (#44751) 2024-06-18 08:27:04 +02:00
Veselin Dobrev
6e7fb9a308
MFEM: add new version v4.7 (#44010)
* Core change: logic for extracting RPATHs from modules may return
  `None`: filter this out of the set of RPATHs that is auto-generated
* Core change: `CachedCMakePackage` no longer adds ldflags to
  `CMAKE_STATIC_LINKER_FLAGS`: generally these flags are not appropriate
  for static linking (e.g. invocation of `ar`)
* [mfem] Add version 4.7
* [mfem] Add variant for precision (single/double). Enforce consistency
  for precision amongst mfem and hypre/petsc/mumps dependencies
* [mfem] Add cxxstd (and related constraints preventing use of
  old cxxstd values for newer versions of some dependencies)
* [hypre] In line with prior point, added support for specifying
  precision
* [petsc] Add config option to avoid error when building against
  `superlu-dist+rocm`
* [hiop] add proper `raja`/`umpire`/`camp` version constraints for
  `hiop` versions 0.3.99-0.4.x; require `+raja` for `+rocm`, and
  add dependency on `hiprand` for `+rocm`
* [butterflypack, mfem, strumpack, suite-sparse] Require
  `CRAYLIBS_{target-family}` env var to be defined
* [suite-sparse] versions `@7.4:` changed install location of headers:
  add symlink from old location to new location
* [zlib-ng] Fix error where shared libs were not successfully built for
  `%cce@17` (the build did not fail, but the finished `zlib-ng%cce@17`
  install did not have shared libs)
2024-06-11 16:39:22 -07:00
psakievich
337bf3b944
Enable and constrain reuse for GitVersion installations (#43859)
* Preserve higher weight for CLI git ref versions

Currently the concretizer fails if you reuse a git ref version
that has already been installed but modify the spec at all.

See #38484 for futher diagnosis

The issue here is that since there is no established provenance for
these versions the highest weight they are currently assigned is
that of prior install. Re-use checks then fail because the weight of
the version is identical to the solver.

Ironically, these versions are given the highest weights possible when
specified on the CLI for the first time.  They should only appear in a
DAG if they are an exact match or if the user specifies them at the CLI.
Therefore it makes sense to preserve their higher ordering.

Getting this right is critical to moving all branch based versions to a pinned
git-ref in the future.

* [@spackbot] updating style on behalf of psakievich

* Update lib/spack/spack/solver/asp.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Add provenance specific to git ref installs

* Sensitvity to name that I could not track down

* Add regression test

* Adjust test

* Add prefer standard unit-test

* Style

* Add required mock

* Format and mark

* Make unit-test case reproduce CLI investigation

* Remove unnecessary mock package

* [@spackbot] updating style on behalf of psakievich

* Use already developed fixture

* Add zlib-ng to mocks again

* Remove accidental adds

* Remove maintainer

* [@spackbot] updating style on behalf of psakievich

* Rename test file

* [@spackbot] updating style on behalf of psakievich

* Remove unused imports

* Update tests

* [@spackbot] updating style on behalf of psakievich

* Style

* Update lib/spack/spack/test/concretize.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update solver rule

* Duplicate installed rules for installed_git_version

* Revert "Duplicate installed rules for installed_git_version"

This reverts commit 17223fc8d1.

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
2024-06-11 14:57:09 -06:00
dependabot[bot]
f80287166e
build(deps): bump sphinx-design from 0.5.0 to 0.6.0 in /lib/spack/docs (#44360)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.5.0 to 0.6.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.5.0...v0.6.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-06 14:34:59 +02:00
dependabot[bot]
a20d34b8aa
build(deps): bump pytest from 8.2.1 to 8.2.2 in /lib/spack/docs (#44553)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.1...8.2.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-06 08:38:54 +02:00
Harmen Stoppels
3ffe02a2fe
spack edit: allow edit multiple files at once (#44416) 2024-06-05 14:19:11 +02:00
Todd Gamblin
278f5818b7
python: make every view a venv (#44382)
#40773 introduced python-venv, which improved build isolation and avoids issues with,
e.g., `ubuntu`'s system python modifying `sysconfig` to include a (very unwanted)
`local` directory within the default install layout.

This addresses a few cases where #40773 removed functionality, without harming the
default cases where we use `python-venv`.

Traditionally, *every* view with `python` in it was essentially a virtual environment,
because we would copy the `python` interpreter and `os.py` into every view when linking.
We now rely on `python-venv` to do that, but only when it's used (i.e. new builds) and
only for packages that have an `extends("python")` directive.

This again makes every view with `python` in it a virtual environment, but only
if we're not already using a package like `python-venv`. This uses a different
mechanism from before -- instead of using the `virtualenv` trick of copying `python`
into the prefix, we instead create a `pyvenv.cfg` like `venv` (the more modern way
to do it).

This fixes two things:
1. If you already had an environment before Spack `v0.22` that worked, it would
   stop working without a reconcretize and rebuild in `v0.22`, because we no longer
   copy the python interpreter on link. Adding `pyvenv.cfg` fixes this in a more
   modern way, so old views will keep working.

2. If you have an env that only includes python packages that use `depends_on("python")`
   instead of `extends("python")`, those packages will now be importable as before,
   though they won't have the same level of build isolation you'd get with `extends`
   and `python-venv`.

* views: avoid making client code deal with link functions

Users of views and ViewDescriptors shouldn't have to deal with link functions -- they
should just say what type of linking they want.

- [x] views take a link_type, not a link function
- [x] views work out the link function from the link type
- [x] view descriptors and commands now just tell the view what they want.

* python: simplify logic for avoiding pyvenv.cfg in copy views

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04 09:52:21 -06:00
Todd Gamblin
89a0c9f4b3
nvhpc: Do not use -Wno-error with nvhpc (#44142)
In #30882, we made Spack ignore `-Werror` calls so that it could more easily build
projects that inject `-Werror` into their builds. We did this by translating them to
`-Wno-error` in the compiler wrapper. However, some compilers (like `nvhpc`) do not
support `-Wno-error`. We need to exclude them from this feature until they do.

- [x] make a property on `PackageBase` for `keep_werror` that knows not to use it for
      `nvhpc`.

- [x] update property so that it keeps only the specific `-Werror=...` args for newer nvhpc's,
      which support `-Wno-error` but not `-Wno-error=...`

---------

Co-authored-by: William Mou <william.mou1024@gmail.com>
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-06-04 03:46:35 -07:00
Todd Gamblin
85f13442d2
Consolidate concretization output for environments (#44489)
When Spack concretizes environments, it prints every (newly concretized) root spec
individually with all of its dependencies. For most reasonably sized environments, this
is too much output. This is true for three commands:

* `spack concretize` when concretizing an environment with newly added specs
* `spack install` when installing an environment with newly added specs
* `spack spec` with no arguments in an environment

The output dates back to before we had unified environments or nicer spec traversal
routines, and we can improve it.

This PR makes environment concretization output analogous to what we do for regular
specs. Just like `spack spec` for a single spec, we show all root specs with no
indentation, so you can easily see the specs you explicitly requested. Dependencies are
shown:

1. With indentation according to their depth in a breadth-first traversal starting at
   the roots;
2. Only once if they appear on paths from multiple roots

So, the default is now consistent with `spack spec` for one spec--it's `--cover=nodes`.
i.e., if there are 100 specs in your environment, you'll get 100 lines of output.

If you want to see more details, you can do that with `spack spec` using the arguments
you're already familiar with. For example, if you wanted to see dependency types and
*all* dependencies, you could use `spack spec -l --cover=edges`. Or you could add
deptypes and namespaces with, e.g. `spack spec -ltN`.

With no arguments in an environment, `spack spec` concretizes (if necessary) and shows
the concretized environment. If you run `spack concretize` *first*, inspecting the
environment repeatedly with `spack spec` will be fast, as everything is already in the
`spack.lock` file.

- [x] factor most logic of `Spec.tree()` out of `Spec` class into `spack.spec.tree()`,
      which can take multiple specs as roots.
- [x] make `Spec.tree()` call `spack.spec.tree()`
- [x] `spack.environment.display_specs()` now uses `spack.spec.tree()`
- [x] Update `spack concretize`
- [x] Update `spack install`
- [x] Update `spack spec` to call `spack.spec.tree()` for environments.
- [x] Continue to output specs individually for `spack spec` when using
      `--yaml` or `--json`
2024-06-03 13:29:14 -07:00
Harmen Stoppels
392396ded4
traverse: pass key correctly (#44460)
Fixes a bug where custom keys to identify nodes were not passed
correctly.
2024-05-31 08:26:38 -07:00
John W. Parent
a7381a9413
Bootstrapping: don't use Mac OS binaries on Windows (#44193)
`BuildcacheBootstrapper` uses `Spec.intersects` to match specs needed
for bootstrapping against the binary cache. The specs were not
sufficiently-detailed to prevent matching e.g. cached binaries for
Mac OS on Windows; this commit adds the platform to each requested
bootstrap spec to prevent that.
2024-05-30 17:10:29 -06:00
Massimiliano Culpo
f242e0fd0c
remove platform=cray (#43796)
Remove support for `cray` as a separate platform.

Any platform previously detected as `cray` is now detected as `linux`.

Users who still need platform=cray have to stick to Spack 0.22
2024-05-30 14:21:32 +02:00
Harmen Stoppels
f44f5b0db0
tests: use fewer default paths (#44432)
Set config:install_tree:root and modules:default:roots to something
sensible.
2024-05-30 08:12:19 +02:00
Harmen Stoppels
39ace5fc45
concretizer: enforce host compat when reuse only (#44428)
Fixes a bug in the concretizer where specs depending on a host
incompatible libc would be used. This bug triggers when nothing is
built.

In the case where everything is reused, there is no libc provider from
the perspective of the solver, there is only compatible_libc. This
commit ensures that we require a host compatible libc on any reused
spec, additionally to requiring compat with the chosen libc provider.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-05-30 07:31:28 +02:00
Harmen Stoppels
70412612c7
installer: improve init signature and explicits (#44374)
Change the installer to take `([pkg], args)` in the constructor instead
of `[(pkg, args)]`. The reason is that certain arguments are global
settings, and the new API ensures that those arguments cannot be
different across different "build requests".

The `explicit` install arg is now a list of hashes, and the installer is
no longer responsible for determining what package is installed
explicitly. This way environment installs can simply pass the list of
environment roots, without them necessarily being explicit build
requests. For example an env with two roots [a, b], where b depends on
a, would not always cause spack install to mark b as explicit.

Notice that `overwrite` already took a list of hashes, this makes
`explicit` consistent.

`package.do_install(explicit=True)` continues to take a boolean.
2024-05-29 08:25:34 +02:00
Harmen Stoppels
e461234865
link: directly bind to os.* on non-windows (#44400)
The windows wrappers for basic functions like `os.symlink`,
`os.readlink` and `os.path.islink` in the `llnl.util.symlink` module
have bugs, and trigger more file system operations on non-windows than
they should.

This commit just binds `llnl.util.symlink.symlink = os.symlink` etc so
built-in functions are used on non-windows
2024-05-27 13:37:04 +02:00
Peter Scheibel
72deb53832
Make spack clean env-aware (#44227)
`spack clean <spec>` will now resolve specs based on the active environment if one is active.

If an env is active but no matching spec is found, this will fall back on fully concretizing.
2024-05-24 15:00:50 -07:00
Massimiliano Culpo
7c87253fd8
Make strong preferences even stronger (#44373)
Before this PR, if Spack could see a possibility to reuse a spec that
doesn't match a strong preference, it would do so. After the PR, a
strong preference would take precedence.
2024-05-24 10:06:28 -07:00
Samuel Khuvis
d88d720577
add mvapich support for intel scalapack_libs (#44246)
* add mvapich support for intel scalapack_libs

* Add mvapich support for oneapi scalapack_libs
2024-05-24 02:51:53 +00:00
Greg Becker
b61bae7640
bugfix: external detection for compilers with os but not target (#44156)
avoid calling `spec.target` when None.

When an external compiler package has an `os` set but no `target` set, Spack
currently falls into a codepath that calls `spec.target` (which itself calls
`spec.architecture.target.Microarchitecture`) when `spec.architecture.target`
is None, throwing an error.

e.g.

```
packages:
  gcc:
    externals:
    - spec: gcc@12.3.1 os=rhel7
      prefix: /usr
```

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-24 00:13:36 +00:00
Harmen Stoppels
92000e81b8
absolutify_elf_sonames.py: fix _patchelf (#44343) 2024-05-23 14:05:10 +00:00
Massimiliano Culpo
f60e548a0d
ASP-based solver: fix reusing externals on linux (#44316)
We need to tell clingo the libc compatibility of external nodes
in buildcaches or stores, to allow reuse.
2024-05-23 14:37:48 +02:00
mSamiolo
b9816a97fc
docs: update chain.rst to improve discussion of upstreams (#43918)
* Update chain.rst

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* docs: rm leading spaces to avoid indent

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-22 22:04:53 +00:00
pauleonix
7503a41773
cuda: add v12.4.1 (#43488) 2024-05-22 10:50:56 +02:00
Massimiliano Culpo
3f472039c5
Take a lock before querying installed_dependents (#44301)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-05-21 13:16:04 -06:00
Massimiliano Culpo
8020a111df
Demote a warning to debug message, if C compiler is not there (#44182) 2024-05-21 14:09:29 +02:00
dependabot[bot]
86fb547f7c
bump pytest from 8.2.0 to 8.2.1 --- (#44282)
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-21 13:42:22 +02:00
Massimiliano Culpo
72f276fab3
ASP-based solver: fix version optimization for roots (#44272)
This fixes a bug occurring when two root specs need to select
old versions, and these versions have the same penalty in the
optimization. This sometimes caused an older version to be
preferred to a more recent one.

The issue was the omission of `PackageNode` in the optimization
tuple.
2024-05-21 08:41:09 +02:00
Scott Wittenburg
29d4a5af44
gitlab ci: fix untouched spec pruning on windows (#44279)
Use correct path separator in get_all_package_diffs for all platforms.
Ensures correct package change computation on Windows when pruning unchanged specs in Gitlab CI
2024-05-21 00:56:48 +00:00
Wouter Deconinck
5eebd65366
audit: disallow github.com/org/repo/pull/n/commits/hash.patch?full_index=1 (#44212)
* audit: disallow github.com/org/repo/pull/n/commits/hash.patch?full_index=1

* [@spackbot] updating style on behalf of wdconinc

* audit: fix style

* audit: github.com/o/r/pull/n/commits/sha.patch -> sha.patch

* [@spackbot] updating style on behalf of wdconinc

* Revert "[@spackbot] updating style on behalf of wdconinc"

This reverts commit 2ecec99238.

* Revert "audit: github.com/o/r/pull/n/commits/sha.patch -> sha.patch"

This reverts commit 5bd7da2cad.

* fix: modify audit message with suggested fix

* audit: github.com/o/r/pull/n/commits/sha.patch -> /o/r/commit/sha.patch?full_index=1

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-05-19 09:30:19 -05:00
Scott Wittenburg
b33e2d09d3
oci buildcache: handle pagination of tags (#43136)
This fixes an issue where ghcr, gitlab and possibly other container registries paginate tags by default, which violates the OCI spec v1.0, but is common practice (the spec was broken itself). After this commit, you can create build cache indices of > 100 specs on ghcr.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-05-18 11:57:53 +02:00
Todd Gamblin
77c83af17d
docs: remove warning about repositories and package extension (#44247)
Local package repositories are very well supported and we test them extensively, so this
warning from 8 years ago can be removed from the docs.
2024-05-17 22:03:57 +00:00
Jonathon Anderson
6a40a50a29
hpcviewer: Update URLs to use GitLab release assets (#44129) 2024-05-17 18:43:13 +02:00
Chris Marsh
24edc72252
docs: show phase signature for builders (#44067) 2024-05-17 18:16:31 +02:00
Andrew-Dunning-NNL
a24ca50fed
Fix broken link in docs (#44217) 2024-05-17 12:58:11 +00:00
Harmen Stoppels
9dbb18219f
build_environment.py: deal with rpathing identical packages (#44219)
When multiple gcc-runtime packages exist in the same link sub-dag, only rpath
the latest.
2024-05-17 12:29:56 +02:00
John W. Parent
81fe460194
Gitlab CI: Windows Configs (#43967)
Add support for Gitlab CI on Windows

This PR adds the config changes required to configure and execute
Gitlab pipelines running Windows builds on Windows runners using
the existing Gitlab CI infrastructure (and newly added Windows 
infrastructure).

* Adds support for generating child pipelines dispatched to Windows runners
* Refactors the relevant pre-scripts, scripts, and post scripts to be compatible with Windows
* Adds Windows config section describing Windows jobs
* Adds VTK as Windows build stack (to be expanded later)
* Modifies proj to build on Windows
* Refactors Windows rpath symlinking to avoid system libs and externals

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2024-05-16 17:00:02 -06:00
John W. Parent
1ce09847d9
Prefer llnl.util.symlink.readlink to os.readlink (#44126)
Symlinks on Windows can use longpath prefixes (\\?\); these are fine
in the context of win32 API interactions but break numerous facets of
Spack behavior that rely on string parsing/matching (archiving,
binary distributions, tarball extraction, view regen, etc).

Spack's internal readlink method (llnl.util.symlink.readlink)
gracefully handles this by removing the prefix and otherwise behaving
exactly as os.readlink does, so we should prefer that in all cases.
2024-05-16 10:56:04 -07:00
Todd Gamblin
d189387c24
bugfix: add arg to write_line_break() in spack_yaml (#42727)
`ruamel`'s `Emitter.write_line_break()` method takes an extra argument that we forgot to
implement in our custom emitter.
2024-05-15 19:25:06 -07:00
John W. Parent
43291aa723
Cdash reporting timeout (#44213)
* Add timeout to cdash reporter PUT request

Add cdash timeout everywhere
Correct mock responder api

* Style

* brief doc
2024-05-15 15:41:51 -04:00
Harmen Stoppels
4f111659ec
glibc: detect from "Free Software Foundation" not "gnu" (#44154)
which should be more generic
2024-05-13 20:11:27 +02:00