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Author SHA1 Message Date
Garth N. Wells
43cb49d87a py-nanonbind: add new versions (#40161) 2023-09-27 16:28:26 +02:00
eugeneswalker
5165524ca6 e4s cray sles: suspend ci until machine issues resolved (#40219) 2023-09-27 04:51:34 +02:00
Martin Aumüller
38dc3a6896 vtk: @9.2 need seacas@2022-10-14, fix macos (#39896) 
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
 2023-09-26 13:48:44 -06:00
John W. Parent
115e448bd3 Paraview package: update freetype find patch for shared libs (#40085) 
VTK's (and therefore Paraview's) FindFreetype module required patching to
handle static import libraries from Freetype. However it did not cover
shared libraries. This adds support for importing shared freetype into the VTK build
 2023-09-26 10:41:24 -07:00
Harmen Stoppels
5c25437c9f spack --profile: dump to stderr (#40209) 2023-09-26 16:18:47 +02:00
Christoph Weber
0e72ff4a0d ploticus: new package (#39881) 
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
 2023-09-26 08:15:12 -05:00
Matt Fraser
90edd18d1f Add NCCL v2.18.5-1 release to recipe (#40201) 2023-09-26 08:05:23 -05:00
Massimiliano Culpo
40dbadb868 crosstool-ng: add v1.26.0 (#40204) 2023-09-26 11:17:39 +02:00
Martin Aumüller
c16546bd4c libressl: fix package & new versions (#39741) 2023-09-26 10:39:29 +02:00
Dom Heinzeller
143e6a4fbb Always apply Python unixcompilers.py rpath fix, not just on cray (#39929) 
* Rename var/spack/repos/builtin/packages/python/cray-rpath-3.1.patch as var/spack/repos/builtin/packages/python/rpath-non-gcc.patch and apply unconditionally

* Update var/spack/repos/builtin/packages/python/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-09-26 02:38:20 -06:00
Martin Aumüller
13816f19fd opencv: add 4.7.0 and 4.8.0 and fix ffmpeg dependency (#39013) 2023-09-26 10:28:29 +02:00
Martin Aumüller
34ff3b408b seacas: correctly limit fmt dependency (#39756) 
versions older than 2022-10-14 do not build with fmt@10, either:
fmt/core.h:1579:3: error: static_assert failed due to requirement 'formattable'
 2023-09-26 06:35:38 +02:00
Victor A. P. Magri
aec88ef3e6 hypre: add support for magma (#40121) 2023-09-26 06:27:14 +02:00
snehring
9fda22d942 bcl2fastq2: patch for compiling on aarch64 (#40195) 2023-09-26 06:26:19 +02:00
snehring
550613ee3a gmap-gsnap: add v2023-07-20 and aarch64 support (#40200) 2023-09-26 05:59:31 +02:00
Ethan Williams
5341834ebe Elbencho: add elbencho package (#40193) 
* add elbencho package
* pep8 compliant
* add description
* depends on boost
* boost options
* dependencies
* fix ncurses not linking properly missing tinfo
* pep8 fix
* fix style of boost variants
* final style fix - spack style is happy
* correct cufile env variable name

---------

Co-authored-by: Ethan W <mail@ethanwilliams.xyz>
 2023-09-25 18:53:28 -06:00
Alberto Invernizzi
fc027e34d1 apex: add new version 2.6.3 + deal with ompt build problem (#40073) 
* add new version 2.6.3
* add conflict for openmp when using gcc
 2023-09-25 16:00:58 -07:00
Harmen Stoppels
aef58776b4 openssl: new versions (#40194) 
apparently there was still a 1.1.1 release
 2023-09-25 21:54:05 +02:00
Cameron Smith
4e17a40d09 omegah: new version (#40192) 2023-09-25 13:53:36 -06:00
Matthieu Dorier
d97251a4c6 spdlog: add version 1.12.0 (#40186) 2023-09-25 12:23:02 -07:00
snehring
2a66a67132 subread: removing mtune arg to compiler (#40197) 2023-09-25 12:19:25 -07:00
eugeneswalker
10fd69ec74 new package: gsibec (#40137) 2023-09-25 11:28:04 -06:00
Harmen Stoppels
9889a0cac6 py-numcodecs: drop upperbound, add new version, avoid native compilation (#40183) 
* py-numcodecs: drop upperbound, add new version, avoid native compilation

* py-numcodecs: add entrypoints

* Remove another upperbound on python

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-09-25 07:28:32 -06:00
Harmen Stoppels
65ffd0dd63 jsoncpp: add meson build system, update package, update cmake ~ownlibs (#39639) 2023-09-25 10:13:30 +02:00
Bernhard Kaindl
3d2c779b87 openssh: add version 9.4p1 and fix compile issue with new zlib-1.3 (#40174) 
The fix for the compile issue was improved by Bernhard Kaindl.
He also added to fix two classes of other build fails:
- add missing openssl dependency version limit to older openssh versions
- add missing -fcommon for new compilers building old openssh versions

Co-authored-by: snehring <snehring@iastate.edu>
 2023-09-25 08:30:10 +02:00
Harmen Stoppels
b57c2a10d4 phist: remove python 3.10 upperbound (#40175) 2023-09-25 08:28:13 +02:00
Diego Alvarez S
849a0a5eeb Add opendjk 11.0.20.1+1, 17.0.8.1+1 (#40035) 2023-09-25 05:09:30 +02:00
Rocco Meli
7e4a6160b9 namd: Add NAMD 3.0b3 and ARM support (#40134) 2023-09-25 05:04:17 +02:00
dependabot[bot]
646e7b4b00 build(deps): bump black in /.github/workflows/style (#40165) 
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.9.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.9.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-24 17:48:02 +00:00
eugeneswalker
eea86c3981 new package: ecmwf-atlas (#40136) 2023-09-24 10:43:09 -06:00
dependabot[bot]
37c48fc82c build(deps): bump urllib3 from 2.0.4 to 2.0.5 in /lib/spack/docs (#40119) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.0.5.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.4...v2.0.5)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-24 17:35:48 +02:00
George Young
47daba3dc1 blast-plus: add 2.14.1 (#40179) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-24 09:33:38 -06:00
Brian Vanderwende
46062d98fd visit: Add NetCDF format support (#40065) 2023-09-24 17:26:34 +02:00
François Trahay
4e37084ed4 EZTrace: add v2.1 (#39748) 2023-09-24 17:12:32 +02:00
Thomas Madlener
e7c229393d garfieldpp: Fix the signature of setup_dependent_build_environment (#40133) 2023-09-24 17:04:41 +02:00
Houjun Tang
87fd9c3e93 sw4: add v3.0 (#40146) 2023-09-24 16:54:32 +02:00
snehring
676f2a3175 hmmer: adding new version 3.4 (#40148) 2023-09-24 16:53:18 +02:00
Adam J. Stewart
5fe7f5329b py-torchvision: minimize dependencies (#40163) 2023-09-24 16:27:09 +02:00
Adam J. Stewart
c6a3dd03ab py-torchmetrics: add v1.2.0 (#40164) 2023-09-24 16:25:34 +02:00
Hartmut Kaiser
ebdd5e28f2 flecsi: bumping HPX requirement to V1.9.1 (#32355) 2023-09-24 16:24:33 +02:00
dependabot[bot]
068abdd105 build(deps): bump mypy from 1.5.0 to 1.5.1 in /.github/workflows/style (#40166) 
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-24 16:21:41 +02:00
dependabot[bot]
9ec372a86c build(deps): bump actions/checkout from 4.0.0 to 4.1.0 (#40172) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.0.0 to 4.1.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](3df4ab11eb...8ade135a41)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-24 16:08:15 +02:00
Alec Scott
5e05f6b7c6 bfs: add v3.0.2 (#40176) 2023-09-24 15:53:15 +02:00
Alec Scott
7988d8c67d glab: add v1.33.0 (#40177) 2023-09-24 15:53:01 +02:00
Alec Scott
658a3f2fdb hugo: add v0.118.2 (#40178) 2023-09-24 15:52:42 +02:00
Rocco Meli
582f0289af Add mda-xdrlib and update pyedr and panedr (#39912) 
* ensure umpire~cuda~rocm when ~cuda~rocm

* Add mda-xdrlib and update pyedr and panedr

* Update var/spack/repos/builtin/packages/py-mda-xdrlib/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* code review

* fix python pin, conflated with py-tomli

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
 2023-09-24 02:07:59 -06:00
eugeneswalker
95b737d923 trilinos +shylu: patch to resolve trilinos issue #12048 (#40169) 
* trilinos +shylu: patch to resolve trilinos issue #12048

* e4s ci: build xyce ^trilinos+shylu

---------

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
 2023-09-24 16:28:03 +09:00
Adam J. Stewart
d7e9a13f53 protobuf: add v4.24.3 (#40152) develop-2023-09-24 2023-09-23 20:04:10 +02:00
Tom Payerle
25e45f9f07 py-tinyarray: add version 1.2.4, needed for python@3.10 (#40171) 
* py-tinyarray: add version 1.2.4, needed for python@3.10

Added @1.2.4
Require @1.2.4 when using python@3.10:

* py-tinyarray: format fix
 2023-09-23 08:57:46 -05:00
Cameron Smith
38cc51ec36 pumi: add version 2.2.8 (#40143) 2023-09-22 14:38:46 -07:00