Commit Graph

38788 Commits

Author SHA1 Message Date
jmlapre
ff058377c5
sst: update core, elements, macro to 14.1.0 (#47184) 2024-10-28 09:10:46 +01:00
Adam J. Stewart
e855bb011d
py-hatchet: add v1.4.0 (#47222) 2024-10-28 09:05:16 +01:00
Bernhard Kaindl
dbab4828ed
py-mgmetis: fails to build with mpi4py @4: depend on @3 (#47236) 2024-10-28 09:04:18 +01:00
Christophe Prud'homme
fac92dceca
cpr: add versions up to v1.11 (#47242) 2024-10-28 08:39:16 +01:00
Wouter Deconinck
035b890b17
pango: add v1.54.0 (#47244) 2024-10-28 08:37:21 +01:00
Wouter Deconinck
2a7e5cafa1
geode: add v1.13.8, v1.14.3, v1.15.1 (#47253) 2024-10-28 08:36:26 +01:00
Wouter Deconinck
49845760b6
less: add v661, v668 (#47252) 2024-10-27 19:47:35 -06:00
Wouter Deconinck
ce6255c0bb
nano: add v8.1, v8.2 (and v6.4) (#47245)
* nano: add v8.1, v8.2

* nano: depends on gettext

* nano: add v6.4
2024-10-28 01:21:18 +01:00
Diego Alvarez S.
f0d54ba39d
Add nextflow 24.10.0 (#47251) 2024-10-27 17:32:20 -06:00
Harmen Stoppels
2ec4281c4f
Remove a few redundant imports (#47250)
* remove self-imports

* remove unused imports
2024-10-27 15:40:05 -06:00
Harmen Stoppels
e80d75cbe3
gha: circular imports: pin (#47248) 2024-10-27 21:34:32 +01:00
Greg Becker
47e70c5c3a
explicit splice: do not fail for bad config replacement if target not matched (#46925)
Originally, concretization failed if the splice config points to an invalid replacement.

This PR defers the check until we know the splice is needed, so that irrelevant splices
with bad config cannot stop concretization.

While I was at it, I improved an error message from an assert to a ValueError.
2024-10-27 11:35:10 -07:00
William R Tobin
fea2171672
silo: resolve hdf5 develop-X.Y branch versions (#39344) 2024-10-27 06:44:20 -06:00
Beat Reichenbach
12a475e648
feat: Add OpenColorIO option to OpenImageIO (#47237)
* feat: Add OpenColorIO option to OpenImageIO

* style: Pep 8

---------

Co-authored-by: Beat Reichenbach <beatreichenbach@users.noreply.github.com>
2024-10-27 09:37:49 +01:00
Wouter Deconinck
c348891c07
pango: deprecate @:1.44 due to CVE (#47232) 2024-10-27 06:56:13 +01:00
Jeff Hammond
019e90ab36
NWChem: add TCE_CUDA option (#47191)
Signed-off-by: Jeff Hammond <jehammond@nvidia.com>
2024-10-27 06:54:06 +01:00
Jeff Hammond
19137b2653
add the USE_F90_ALLOCATABLE option to Spack (#47190)
Signed-off-by: Jeff Hammond <jehammond@nvidia.com>
2024-10-27 06:53:48 +01:00
Andrew W Elble
2761e650fa
gem5: new package (#47218) 2024-10-27 06:28:26 +01:00
Asa
84ea389017
py-olcf-velocity: new package (#47215)
* Add package py-olcf-velocity

* Removed trailing newline

* Fixed packages description line length

---------

Co-authored-by: Asa Rentschler <rentschleraj@ornl.gov>
2024-10-27 05:36:23 +01:00
Adam J. Stewart
17f07523f5
py-alive-progress: support newer Python (#47220) 2024-10-27 05:24:51 +01:00
Pranav Sivaraman
bd2ddb8909
byte-lite: new package (#47234)
* byte-lite: new package

* byte-lite: style adjustments
2024-10-27 05:22:58 +01:00
Adam J. Stewart
f5db757e66
adios2: mark conflict with newer Python@3.11 for @:2.7 (#47219) 2024-10-27 04:40:38 +01:00
Dave Keeshan
277f8596de
yosys: Update to version 0.46, also include 0.43, 0.44 and 0.45 (#47200) 2024-10-26 21:56:12 +02:00
Todd Gamblin
c8bebff7f5
Add -t short option for spack --backtrace (#47227)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-26 09:16:31 +02:00
Paul
61d2d21acc
Add Go 1.23.2, 1.22.8, and 1.22.7 (#47225) 2024-10-25 14:15:35 -06:00
John W. Parent
7b27aed4c8
Normalize Spack Win entry points (#38648)
* Normalize Spack Win entrypoints

Currently Spack has multiple entrypoints on Windows that in addition to
differing from *nix implementations, differ from shell to shell on
Windows. This is a bit confusing for new users and in general
unnecessary.
This PR adds a normal setup script for the batch shell while preserving
the previous "click from file explorer for spack shell" behavior.
Additionally adds a shell title to both powershell and cmd letting users
know this is a Spack shell

* remove doskeys
2024-10-25 15:23:29 -04:00
Dom Heinzeller
ad0b256407
Intel/Oneapi compilers: suppress warnings when using Cray wrappers (#47046)
#44588 we added logic to suppress deprecation warnings for the
Intel classic compilers. This depended on matching against 

* The compiler names (looking for icc, icpc, ifort)
* The compiler version

When using an Intel compiler with fortran wrappers, the first check
always fails. To support using the fortran wrappers (in combination
with the classic Intel compilers), we remove the first check and
suppress if just the version matches. This works because:

* The newer compilers like icx can handle (ignore) the flags that
  suppress deprecation warnings
* The Cray wrappers pass the underlying compiler version (e.g. they
  report what icc would report)
2024-10-25 12:17:49 -07:00
Gregory Lee
a2a3a83a26
Packages/javacerts (#47201)
* new openjdk variant to symlink system certificate

* new openjdk variant to symlink system certificate

* new openjdk variant to symlink system certificate

* new openjdk variant to symlink system certificate

* Update var/spack/repos/builtin/packages/openjdk/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

---------

Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-10-25 12:45:14 -06:00
Harmen Stoppels
7d86670826 ensure write_fd.close() isn't called when sys.std* cannot be redirected 2024-10-25 10:16:44 -07:00
Harmen Stoppels
ae306b73c3 Avoid a socket to communicate effectively a bit 2024-10-25 10:16:44 -07:00
Harmen Stoppels
b63cbe4e6e Replace MultiProcessFd with Connection objects
Connection objects are Python version, platform and multiprocessing
start method independent, so better to use those than a mix of plain
file descriptors and inadequate guesses in the child process whether it
was forked or not.

This also allows us to delete the now redundant MultiProcessFd class,
hopefully making things a bit easier to follow.
2024-10-25 10:16:44 -07:00
dependabot[bot]
ef220daaca
build(deps): bump actions/checkout from 4.2.1 to 4.2.2 (#47185)
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.2.1 to 4.2.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](eef61447b9...11bd71901b)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-10-25 09:48:50 -07:00
Harmen Stoppels
e86a3b68f7
file_cache.py: allow read transaction on uninitialized cache (#47212)
This allows the following

```python
cache.init_entry("my/cache")
with cache.read_transaction("my/cache") as f:
    data = f.read() if f is not None else None
```

mirroring `write_transaction`, which returns a tuple `(old, new)` where
`old` is `None` if the cache file did not exist yet.

The alternative that requires less defensive programming on the call
site would be to create the "old" file upon first read, but I did not
want to think about how to safely atomically create the file, and it's
not unthinkable that an empty file is an invalid format (for instance
the call site may expect a json file, which requires at least {} bytes).
2024-10-25 17:10:14 +02:00
Dave Keeshan
7319408bc7
Add version 0.0.3836 (#47204) 2024-10-25 08:30:08 +02:00
dependabot[bot]
b34159348f
build(deps): bump actions/setup-python from 5.2.0 to 5.3.0 (#47209)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.2.0 to 5.3.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](f677139bbe...0b93645e9f)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-10-25 07:36:14 +02:00
Jordan Galby
f13d998d21
Add spack short version in config variables (#47016) 2024-10-25 07:34:59 +02:00
Jon Rood
2912d4a661
tioga: add v1.2.0. (#47208) 2024-10-24 22:04:33 -06:00
Jon Rood
8e2ec58859
exawind: add v1.1.0. (#47207) 2024-10-24 22:00:22 -06:00
Jon Rood
01eb26578b
amr-wind: add v3.1.6. (#47205) 2024-10-24 21:53:54 -06:00
Jon Rood
fe0a8a1735
nalu-wind: add v2.1.0. (#47206) 2024-10-24 21:39:57 -06:00
Adam J. Stewart
d523f12e99
py-jupyter: add v1.1.1 (#47194) 2024-10-25 00:42:39 +02:00
Tamara Dahlgren
1b0631b69e
Env help: expand and refine subcommand help and descriptions (#47089)
This PR is in response to a question in the `environments` slack channel (https://spackpm.slack.com/archives/CMHK7MF51/p1729200068557219) about inadequate CLI help/documentation for one specific subcommand.

This PR uses the approach I took for the descriptions and help for `spack test` subcommands.  Namely, I use the first line of the relevant docstring as the description, which is shown per subcommand in `spack env -h`, and the entire docstring as the help.  I then added, where it seemed appropriate, help.  I also tweaked argument docstrings to tighten them up, make consistent with similar arguments elsewhere in the command, and elaborate when it seemed important.  (The only subcommand I didn't touch is `loads`.)

For example, before:
```
$ spack env update -h
usage: spack env update [-hy] env

positional arguments:
  env               name or directory of the environment to activate

optional arguments:
  -h, --help        show this help message and exit
  -y, --yes-to-all  assume "yes" is the answer to every confirmation request
```

After the changes in this PR:
```
$ spack env update -h
usage: spack env update [-hy] env

update the environment manifest to the latest schema format

    update the environment to the latest schema format, which may not be
    readable by older versions of spack

    a backup copy of the manifest is retained in case there is a need to revert
    this operation
    

positional arguments:
  env               name or directory of the environment

optional arguments:
  -h, --help        show this help message and exit
  -y, --yes-to-all  assume "yes" is the answer to every confirmation request
```

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-24 13:55:00 -07:00
AMD Toolchain Support
65bb3a12ea
hdf5: disable _Float16 support for aocc (#47123) 2024-10-24 14:44:09 -06:00
Harmen Stoppels
5ac2b8a178
compilers.yaml: require list of strings for modules (#47197) 2024-10-24 13:28:38 -06:00
Martin Lang
b063765c2e
miniforge3: wrong sbang replacement (#47178) 2024-10-24 21:26:04 +02:00
Tamara Dahlgren
4511052d26
py-webdataset: new package (#47187) 2024-10-24 13:22:05 -06:00
Adam J. Stewart
3804d128e7
py-lightning-uq-box: add new package (#47132) 2024-10-24 20:08:18 +02:00
Thomas-Ulrich
f09ce00fe1
seissol: new package (#41176)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-10-24 14:36:37 +02:00
Tamara Dahlgren
cdde7c3ccf
py-braceexpand: new package (#47186) 2024-10-24 04:38:56 -06:00
Laura Weber
c52c0a482f
neartree: added version 5.1.1, added Makefile patches to fix libtool error (#47155) 2024-10-24 04:08:50 -06:00