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Author SHA1 Message Date
Vanessasaurus
c41c7ce638 adding debugedit package. (#22458) 
This package used to be a part of rpm, but now is being developed separately.
It will supposedly be moved to a sourceware branch (it is maintained by
redhat) but I do not know if this will happen soon. We need it in order
to change locations in binaries that are built in /tmp and then moved
elsewhere. I will ping @woodard who might be able to give us an estimate
if we should include this development repository or wait for it to be
moved elsewhere. Once this is merged, we will want to use the bootstrap
approach to install and use the library from spack.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
 2021-03-23 22:59:34 -07:00
Desmond Orton
95ad5b882c new package py-pyem (#22425) 
* new package py-pyem

* Added patch note and removed homepage

* Style fixes

* Moved the version above deps

* Style fix on line 20
 2021-03-23 21:25:57 +01:00
Sergey Kosukhin
a1aec1450b Add stdcxx_libs for PGI and Cray compilers (#22491) 2021-03-23 14:19:03 -06:00
Rémi Lacroix
45e076dd20 Grace: new package (#22476) 2021-03-23 14:13:03 -06:00
Daniel Arndt
73311bc6cd Allow DataTransferKit to be built with external ArborX package (#22486) 2021-03-23 20:07:14 +00:00
Robert Rosca
3d74592be2 Add older versions fo py-msgpack-numpy (#22490) 2021-03-23 14:07:10 -06:00
Massimiliano Culpo
413c422e53 bootstrap: account for platform specific configuration scopes (#22489) 
This change accounts for platform specific configuration scopes,
like ~/.spack/linux, during bootstrapping. These scopes were
previously not accounted for and that was causing issues e.g.
when searching for compilers.
 2021-03-23 14:29:13 -05:00
Rémi Lacroix
3d0adf3a8a OpenFOAM-org: Fix compilation of version 2.4.0. (#22472) 
Fix "isnan" errors when compiling version 2.4.0 with recent compilers.
 2021-03-23 11:34:30 -07:00
Rémi Lacroix
4d02439820 OpenFOAM: Depend on CGAL 4.X. (#22474) 
CGAL 5.X is currently not supported.
 2021-03-23 11:33:01 -07:00
Martin Pokorny
c4b38e5102 Initial version of libsakura (#22488) 2021-03-23 18:05:41 +00:00
Rémi Lacroix
495b9bcb60 VAPOR: new package (#22477) 2021-03-23 11:01:32 -07:00
Robert Mijakovic
5bc1ac6ca1 cryptsetup: new version (#22470) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-23 11:00:49 -07:00
Robert Mijakovic
9e316b30d1 intel: new version, 20.0.4 (#22484) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-23 11:40:13 -06:00
Rémi Lacroix
dca23f3c37 Channelflow: Fix the package. (#22483) 
A search and replace went wrong in 2264e30d99.

Thanks to @wadudmiah who reported this issue.
 2021-03-23 12:04:40 -05:00
Robert Mijakovic
0c699d7494 git: new version (#22479) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-23 10:58:12 -06:00
Michael Kuhn
a4e18a9544 flexiblas: add 3.0.4 (#22485) 2021-03-23 17:52:33 +01:00
Robert Mijakovic
76bfdbfb96 cuda: add v11.2.2 (#22471) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-23 15:55:17 +01:00
Harmen Stoppels
8899a08263 OpenMPI: require ssh run dependency (#22115) 
* Bump gdbm
* Add libedit 3.1
* Bump OpenSSH to 8.5p1
* Bump lz4
* Add openssh as a runtime dep of openmpi
 2021-03-23 10:44:22 -04:00
Robert Mijakovic
6a3bef4bb0 gmake: add v4.3 (#22480) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-23 12:47:21 +00:00
Robert Mijakovic
982d1afd01 cmake: new version (#22469) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-23 12:59:21 +01:00
Desmond Orton
6bfc0504cb orthofinder: retrieve sources, overhaul recipes (#22423) 2021-03-23 09:27:52 +01:00
takanori-ihara
adf19379cc fujitsu-ssl2: fix to library list and env variables (#22462) 2021-03-23 08:33:05 +01:00
Robert Cohn
f57626a7c4 Oneapi packages: update URLs, environment management, and dependencies (#22202) 
* Replace URL computation in base IntelOneApiPackage class with
  defining URLs in component packages (this is expected to be
  simpler for now)
* Add component_dir property that all oneAPI component packages must
  define. This property names a directory that should exist after
  installation completes (useful for making sure the install was
  successful) and also defines the search location for the
  component's environment update script.
* Add needed dependencies for components (e.g. intel-oneapi-dnn
  requires intel-oneapi-tbb). The compilers provided by
  intel-oneapi-compilers need some components under certain
  circumstances (e.g. when enabling SYCL support) but these were
  omitted since the libraries should only be linked when a
  dependent package requests that feature
* Remove individual setup_run_environment implementations and use
  IntelOneApiPackage superclass method which sources vars.sh 
  (located in a subdirectory of component_dir)
* Add documentation for IntelOneApiPackge build system

Co-authored-by: Vasily Danilin <vasily.danilin@yandex.ru>
 2021-03-22 17:35:45 -07:00
Massimiliano Culpo
138312efab clingo-bootstrap: account for cray platform (#22460) 2021-03-22 17:57:32 -05:00
Jan Ciesko
364b359c68 Add Kokkos smoke test support (#22071) 
Co-authored-by: Jan Ciesko (-EXP) <jciesko@sandia.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-03-22 12:51:59 -06:00
Aurelien Bouteiller
623edc6674 Invoke ctest -j1 from spack install --test, and build_with_parsec from spack test run (#22070) 
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
 2021-03-22 12:34:03 -06:00
Harmen Stoppels
22425da038 IPython: add v7.21.0 and updated dependencies accordingly (#22448) 2021-03-22 19:22:41 +01:00
Vanessasaurus
c2a9b7aa08 rpm: add new package. (#22382) 
For rpm to build with lua, we additionally need to add a lua.pc file
that the configure script can find.

Patch from : dcaf70897a/gnu/packages/patches/lua-pkgconfig.patch

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-03-22 17:47:56 +01:00
AMD Toolchain Support
2fba3e2bd3 Spack recipes for AOCL 3.0 (#22376) 
Added Spack recipes for AOCL 3.0 blis, ambles, amdlibflame, amdlibm, amdscalapack, aocl-sparce.
 2021-03-22 09:30:08 -07:00
Seth R. Johnson
3a33d45d6d openssh: support spack external find (#22445) 2021-03-22 10:19:07 -06:00
David Hadley
20fc160f21 GENIE: new package package (#22438) 
Add GENIE MC (https://www.genie-mc.org) package.
 2021-03-22 12:04:43 -04:00
Greg Becker
95880d0dac use link/run deps only to compare extensions (#22396) 2021-03-22 10:28:14 -05:00
André Brandenburger
01ea3e3469 py-tensorflow: remove bazel restriction to /tmp (#22250) 2021-03-22 10:06:05 -05:00
TZ
6e3f7781d4 lammps: add most recent stable and patch release (#22435) 2021-03-22 08:37:46 -06:00
TZ
951c4a6cf2 lammps: patch for CUDA-11.x with lammps 21 Jul 2020 (#22434) 
apply upstream patch to make lammps 21 Jul 2020 work with CUDA-11.x (support for compute_30 removed)
 2021-03-22 15:34:04 +01:00
Robert Mijakovic
62f9de535c freetype: new version (#22454) 2021-03-22 14:07:08 +00:00
Robert Mijakovic
af15801649 extrae: new version (#22453) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-22 15:03:03 +01:00
Robert Mijakovic
155c378406 blis: new version (#22449) 2021-03-22 15:02:44 +01:00
Robert Mijakovic
28f2349d1e doxygen: new version (#22452) 2021-03-22 15:00:31 +01:00
Robert Mijakovic
c128c58a93 cryptsetup: new version (#22451) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-22 14:56:15 +01:00
Robert Mijakovic
29e36e7a17 cmake: new version (#22450) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-22 14:54:54 +01:00
Glenn Johnson
d18de945b7 r-lwgeom: new package (#22437) 2021-03-22 12:52:07 +01:00
Glenn Johnson
2741b69791 r-s2: new package plus new dependency r-wk (#22443) 2021-03-22 12:48:06 +01:00
Glenn Johnson
d203456790 r-pool: new package (#22441) 2021-03-22 12:47:21 +01:00
Glenn Johnson
c9043b6258 r-microbenchmark: new package (#22440) 2021-03-22 12:46:52 +01:00
Glenn Johnson
346d880384 r-mapview: added packages and dependencies (#22439) 2021-03-22 12:45:58 +01:00
Robert Mijakovic
d838b8f518 pegtl: add v3.2.0 and a patch for <2.8.3 with gcc 10. (#22422) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-03-22 10:25:12 +00:00
Toyohisa Kameyama
c77267f0a1 dtf: new package. (#22446) 2021-03-22 04:07:07 -06:00
a-saitoh-fj
d49c0148b8 py-s3fs: new package (#22260) 2021-03-22 08:46:16 +01:00
Maxim Belkin
8c04354056 clingo: fix typo (#22444) 2021-03-22 00:52:46 +01:00