Peter Scheibel 
							
						 
					 
					
						
						
							
						
						e451421db3 
					 
					
						
						
							
							1. Specifying the output file path for test-install is now an option (vs. an  
						
						... 
						
						
						
						argument). The default path is [package id].xml in the CWD where test-install
is called from.
2. Fixed a bug with package.build_log_path (which was added in this branch).
3. keep_stage for package.do_install is now set. This allows uninstalling and
reinstalling packages without (re) downloading them. 
						
						
					 
					
						2015-10-15 19:22:36 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						4997f0fe57 
					 
					
						
						
							
							Move logic for tracking the build log into package.py (since that is what is  
						
						... 
						
						
						
						managing the build log) and expose as package.build_log_path. 
						
						
					 
					
						2015-10-15 12:44:02 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						c985ad7644 
					 
					
						
						
							
							Update test failure output: don't include the entire build log, just lines which  
						
						... 
						
						
						
						mention errors (or if no such lines can be found, output the last 10 lines from
the log). 
						
						
					 
					
						2015-10-15 12:23:56 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						b9bf0b942c 
					 
					
						
						
							
							Use spec.traverse vs. recursive function.  
						
						... 
						
						
						
						Also even though I calculated which installs are new (e.g. vs. packages that
have already been installed by a previous command) I forgot to make use of that
in create_test_output (so I was always generating test output even if a package
had been installed before running the test-install command).
Note to avoid confusion: the 'handled' variable (removed in this commit) did not
serve the same purpose as 'newInstalls': it was originally required because the
recursive approach would visit the same dependency twice if more than one
package depended on it. 
						
						
					 
					
						2015-10-15 11:52:08 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						f2b4341ad6 
					 
					
						
						
							
							Always run with verbose output (so eliminate it as an option). Also remove other  
						
						... 
						
						
						
						commented options. 
						
						
					 
					
						2015-10-15 10:45:03 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						11861fb8d7 
					 
					
						
						
							
							Changing name of file requires changing function name to be invoked as a command  
						
						
						
						
					 
					
						2015-10-15 10:35:42 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						e3d703b80f 
					 
					
						
						
							
							Change name of file to conform to conventions.  
						
						
						
						
					 
					
						2015-10-15 10:33:39 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						2ae7839b66 
					 
					
						
						
							
							Edit function names to conform to naming conventions.  
						
						
						
						
					 
					
						2015-10-15 10:26:13 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						0d66362cee 
					 
					
						
						
							
							Only install 1 top-level package with testinstall. Otherwise if multiple  
						
						... 
						
						
						
						packages are specified and a prior one fails, it will prevent any of the others
from succeeding (and generating test output) even if they don't share
dependencies. 
						
						
					 
					
						2015-10-15 10:17:08 -07:00 
						 
				 
			
				
					
						
							
							
								Ben Boeckel 
							
						 
					 
					
						
						
							
						
						3ce85b2270 
					 
					
						
						
							
							spack: split spack_root from prefix  
						
						... 
						
						
						
						A foundation for allowing runtime configuring of the prefix. 
						
						
					 
					
						2015-10-15 09:27:05 -04:00 
						 
				 
			
				
					
						
							
							
								Ben Boeckel 
							
						 
					 
					
						
						
							
						
						9ec4ae83af 
					 
					
						
						
							
							netcdf: link to MPI  
						
						... 
						
						
						
						Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.
Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it. 
						
						
					 
					
						2015-10-15 09:20:16 -04:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						71dcf8833c 
					 
					
						
						
							
							Make sure to generate output for dependencies as if they were separate tests:  
						
						... 
						
						
						
						the original intent was to generate output as if each package was a unit test,
but I noticed that I was only generating test output for top-level packages. 
						
						
					 
					
						2015-10-13 19:02:41 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						1ce6d8b627 
					 
					
						
						
							
							Add spec YAML format to test output.  
						
						
						
						
					 
					
						2015-10-13 10:41:47 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						d16095c856 
					 
					
						
						
							
							Add forgotten file from previous commit.  
						
						
						
						
					 
					
						2015-10-13 10:35:19 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						9f56d9c807 
					 
					
						
						
							
							Don't create test output for any package that was already installed.  
						
						
						
						
					 
					
						2015-10-12 20:56:03 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						6cd22e5786 
					 
					
						
						
							
							1. Added Junit XML format  
						
						... 
						
						
						
						2. Specify output to a file vs. a directory
3. Use [1] and [2] to write an XML file tracking success of package installs in
Junit XML format 
						
						
					 
					
						2015-10-12 20:49:23 -07:00 
						 
				 
			
				
					
						
							
							
								Peter Scheibel 
							
						 
					 
					
						
						
							
						
						b7249d66b3 
					 
					
						
						
							
							Adding command testinstall. See "spack testinstall -h" for documentation.  
						
						... 
						
						
						
						Still need to add output formatting (in a commonly parse-able format like Junit
or TAP). May want to adjust how the build log is accessed in case of a build
failure. 
						
						
					 
					
						2015-10-12 19:18:31 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						2c81875019 
					 
					
						
						
							
							Fix bug in colify color handling.  
						
						
						
						
					 
					
						2015-10-12 14:44:41 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory L. Lee 
							
						 
					 
					
						
						
							
						
						5dd39bfca5 
					 
					
						
						
							
							bug fix for github issue 122  
						
						
						
						
					 
					
						2015-10-08 08:12:30 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						58c5373890 
					 
					
						
						
							
							update warning message for spack -k.  
						
						... 
						
						
						
						- warning said it didn't do checksums; really does. 
						
						
					 
					
						2015-10-08 00:14:44 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						5d64012868 
					 
					
						
						
							
							Merge branch 'features/libxcb-1.11.1' into develop  
						
						
						
						
					 
					
						2015-10-08 00:13:47 -07:00 
						 
				 
			
				
					
						
							
							
								Massimiliano Culpo 
							
						 
					 
					
						
						
							
						
						17de9a37f1 
					 
					
						
						
							
							gcc : fixed spec file  
						
						
						
						
					 
					
						2015-10-06 18:49:18 +02:00 
						 
				 
			
				
					
						
							
							
								Massimiliano Culpo 
							
						 
					 
					
						
						
							
						
						d44571257a 
					 
					
						
						
							
							spec file : everything is dumped, only link rule is modified  
						
						
						
						
					 
					
						2015-10-06 18:49:04 +02:00 
						 
				 
			
				
					
						
							
							
								Massimiliano Culpo 
							
						 
					 
					
						
						
							
						
						f068d1ba57 
					 
					
						
						
							
							GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues  
						
						
						
						
					 
					
						2015-10-06 18:48:47 +02:00 
						 
				 
			
				
					
						
							
							
								Gregory L. Lee 
							
						 
					 
					
						
						
							
						
						6fcf16b710 
					 
					
						
						
							
							added libxcb version 1.11.1  
						
						
						
						
					 
					
						2015-10-05 12:59:26 -07:00 
						 
				 
			
				
					
						
							
							
								Mario Melara 
							
						 
					 
					
						
						
							
						
						75d30b08fb 
					 
					
						
						
							
							Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib  
						
						
						
						
					 
					
						2015-10-01 21:51:55 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						cc6252cdfa 
					 
					
						
						
							
							Merge pull request  #118  from scalability-llnl/features/scr  
						
						... 
						
						
						
						update scr to 1.1.8 
						
						
					 
					
						2015-09-29 18:21:37 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						5563c66675 
					 
					
						
						
							
							update scr to 1.1.8  
						
						
						
						
					 
					
						2015-09-29 18:18:34 -07:00 
						 
				 
			
				
					
						
							
							
								Gregory Becker 
							
						 
					 
					
						
						
							
						
						5fda7daf57 
					 
					
						
						
							
							an ordered database test  
						
						
						
						
					 
					
						2015-09-27 17:54:24 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						dd21a01dc4 
					 
					
						
						
							
							Merge pull request  #116  from mamelara/develop  
						
						... 
						
						
						
						Added samtools bioinformatics software 
						
						
					 
					
						2015-09-27 17:29:50 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						8818f4ac5e 
					 
					
						
						
							
							Remove enabled variants from install prefix.  
						
						... 
						
						
						
						- these make the prefix too long in many cases.
- users can figure out which install is which by querying. 
						
						
					 
					
						2015-09-27 17:01:35 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						adbd393c39 
					 
					
						
						
							
							Remove special characters (@, %, +, ~, etc) from stage name  
						
						
						
						
					 
					
						2015-09-27 17:01:35 -07:00 
						 
				 
			
				
					
						
							
							
								Mario Melara 
							
						 
					 
					
						
						
							
						
						13eb461ec3 
					 
					
						
						
							
							Adding bowtie2 package along with patch  
						
						
						
						
					 
					
						2015-09-24 11:21:54 -07:00 
						 
				 
			
				
					
						
							
							
								Mario Melara 
							
						 
					 
					
						
						
							
						
						521632b3dc 
					 
					
						
						
							
							Added samtools bioinformatics software  
						
						
						
						
					 
					
						2015-09-23 16:30:44 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						6d4eed3845 
					 
					
						
						
							
							Merge pull request  #102  from RasmusWL/features/fish  
						
						... 
						
						
						
						Add fish (shell) package 
						
						
					 
					
						2015-09-23 01:37:59 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						82ea7aec51 
					 
					
						
						
							
							Merge pull request  #106  from justintoo/add-package-doxygen  
						
						... 
						
						
						
						(Package) Add Doxygen (v1.8.10) 
						
						
					 
					
						2015-09-23 01:37:31 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						d474eeb424 
					 
					
						
						
							
							Merge pull request  #110  from scalability-llnl/features/boostupdate  
						
						... 
						
						
						
						update boost package for new releases 
						
						
					 
					
						2015-09-23 00:32:22 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						5d6baacc56 
					 
					
						
						
							
							Merge pull request  #111  from scalability-llnl/features/protobuf  
						
						... 
						
						
						
						add protobuf package 
						
						
					 
					
						2015-09-23 00:31:26 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						46cf0a23d9 
					 
					
						
						
							
							Merge pull request  #112  from scalability-llnl/features/glog  
						
						... 
						
						
						
						add glog package 
						
						
					 
					
						2015-09-23 00:30:37 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						f02af701e5 
					 
					
						
						
							
							Merge pull request  #113  from scalability-llnl/features/gflags  
						
						... 
						
						
						
						add gflags package 
						
						
					 
					
						2015-09-23 00:29:50 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						5f826a0ab7 
					 
					
						
						
							
							Merge pull request  #114  from scalability-llnl/features/snappy  
						
						... 
						
						
						
						Features/snappy 
						
						
					 
					
						2015-09-23 00:27:27 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						ba83dd56a1 
					 
					
						
						
							
							Merge pull request  #115  from scalability-llnl/features/lmdb  
						
						... 
						
						
						
						add lmdb package 
						
						
					 
					
						2015-09-23 00:21:22 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						84823ed828 
					 
					
						
						
							
							add lmdb package  
						
						
						
						
					 
					
						2015-09-22 12:17:01 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						3ade141829 
					 
					
						
						
							
							add leveldb package  
						
						
						
						
					 
					
						2015-09-22 11:59:09 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						30acc6f2f0 
					 
					
						
						
							
							add snappy package  
						
						
						
						
					 
					
						2015-09-21 16:45:59 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						22ba02b22b 
					 
					
						
						
							
							add gflags package  
						
						
						
						
					 
					
						2015-09-21 16:40:23 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						b5d7cd55ce 
					 
					
						
						
							
							add glog package  
						
						
						
						
					 
					
						2015-09-21 16:30:11 -07:00 
						 
				 
			
				
					
						
							
							
								Adam Moody 
							
						 
					 
					
						
						
							
						
						e4e22ed17e 
					 
					
						
						
							
							add protobuf package  
						
						
						
						
					 
					
						2015-09-21 16:19:50 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						d0e22b2240 
					 
					
						
						
							
							Add ref counting to database.  This does not handle removal properly yet.  
						
						
						
						
					 
					
						2015-09-18 11:40:05 -07:00 
						 
				 
			
				
					
						
							
							
								Todd Gamblin 
							
						 
					 
					
						
						
							
						
						fb73979345 
					 
					
						
						
							
							Allow custom timeout for database locking.  
						
						
						
						
					 
					
						2015-09-17 16:09:59 -07:00