Commit Graph

40172 Commits

Author SHA1 Message Date
Weiqun Zhang
259629c300 amrex: add v24.06 (#44495) 2024-06-03 17:52:18 -07:00
Teague Sterling
1ce2baf7a2 duckdb: add v1.0.0, v0.10.3 (#44531)
* duckdb: add v1.0.0, v0.10.3
* Adding issue reference
2024-06-04 02:33:36 +02:00
Garth N. Wells
4576a42a0f py-fenics-dolfinx: dependency update (#44524)
* Update nanobind dependency
* Update py-nanobind dependency
2024-06-03 17:24:40 -07:00
Nils Vu
4fba351b92 charmpp: enable darwin arm build (#44103) 2024-06-03 17:44:29 -06:00
Garth N. Wells
706737245a py-nanobind: add v2.0.0 (#44371)
* Add nanobind 2.0.0
* Add dependency
* Fix dependency name
* Change "_" -> "-"
2024-06-03 15:25:03 -07:00
吴坎
0dbdf49075 Update py-vl-convert-python (#44527)
* Update py-vl-convert-python:
  1. set version to 1.4.0
  2. set version 1.3.0 deprecated since its rust dependency curve@4.1.1 is not able to compile
2024-06-03 15:07:16 -07:00
Owen Solberg
641075539c hugo: add v0.126.3 (#44530)
Co-authored-by: Owen Solberg <owen.solberg@sana.com>
2024-06-03 23:37:51 +02:00
Diego Alvarez S
9428d99991 seqfu: new package (#44445)
* Add seqfu

---------

Co-authored-by: dialvarezs <dialvarezs@users.noreply.github.com>
2024-06-03 14:30:00 -07:00
eugeneswalker
f3cf2e94c4 hip@6.1: fix reference to hsa-rocr-dev so it works when externally defined (#44528) 2024-06-03 14:11:47 -07:00
Todd Gamblin
85f13442d2 Consolidate concretization output for environments (#44489)
When Spack concretizes environments, it prints every (newly concretized) root spec
individually with all of its dependencies. For most reasonably sized environments, this
is too much output. This is true for three commands:

* `spack concretize` when concretizing an environment with newly added specs
* `spack install` when installing an environment with newly added specs
* `spack spec` with no arguments in an environment

The output dates back to before we had unified environments or nicer spec traversal
routines, and we can improve it.

This PR makes environment concretization output analogous to what we do for regular
specs. Just like `spack spec` for a single spec, we show all root specs with no
indentation, so you can easily see the specs you explicitly requested. Dependencies are
shown:

1. With indentation according to their depth in a breadth-first traversal starting at
   the roots;
2. Only once if they appear on paths from multiple roots

So, the default is now consistent with `spack spec` for one spec--it's `--cover=nodes`.
i.e., if there are 100 specs in your environment, you'll get 100 lines of output.

If you want to see more details, you can do that with `spack spec` using the arguments
you're already familiar with. For example, if you wanted to see dependency types and
*all* dependencies, you could use `spack spec -l --cover=edges`. Or you could add
deptypes and namespaces with, e.g. `spack spec -ltN`.

With no arguments in an environment, `spack spec` concretizes (if necessary) and shows
the concretized environment. If you run `spack concretize` *first*, inspecting the
environment repeatedly with `spack spec` will be fast, as everything is already in the
`spack.lock` file.

- [x] factor most logic of `Spec.tree()` out of `Spec` class into `spack.spec.tree()`,
      which can take multiple specs as roots.
- [x] make `Spec.tree()` call `spack.spec.tree()`
- [x] `spack.environment.display_specs()` now uses `spack.spec.tree()`
- [x] Update `spack concretize`
- [x] Update `spack install`
- [x] Update `spack spec` to call `spack.spec.tree()` for environments.
- [x] Continue to output specs individually for `spack spec` when using
      `--yaml` or `--json`
2024-06-03 13:29:14 -07:00
James Taliaferro
f478a65635 nb: new package (#44456)
* new package: nb
* only one filter_file, install completions
* completions now implicit, merged by the view
2024-06-03 12:57:47 -07:00
Rocco Meli
eca44600c5 rdkit (#44476) 2024-06-03 12:53:08 -07:00
Matt Thompson
d7a4652554 pflogger: add version 1.15.0 (#44467) 2024-06-03 12:41:51 -07:00
G-Ragghianti
d85cdd1946 Slate version 2024 05 31 (#44529)
* updating version for slate, blaspp, and lapackpp
* verified new hashes
2024-06-03 12:39:50 -07:00
Chris Marsh
ce3aae1501 seacas: protect against known mixed-toolchain problem (#44378)
* Protected against a known problem with mixed gcc/apple-clang toolchains. Fixes #44330

---------

Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-06-03 12:27:53 -06:00
Chris Marsh
90c4f9d463 Apply patch to allow vtk to compile with %gcc 13 and 14. (#44332)
* Apply patch from upstream to allow vtk compilation with %gcc 12 and 14.

* Fixes #44331

* fix soec usage

* fix compiler version range

* Finalize version range, switch to .diff file


---------

Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-06-03 14:21:09 -04:00
Dan Bonachea
93ccd81d86 upcxx: update to latest gasnet and fix some bitrot (#44488)
* Now need to explicitly depend on libfabric for Cray EX
* Ensure build uses the selected CUDA and ROCm versions
* Correct spelling on `configure --with-ldflags`
* Patch a defect regarding `configure --with-ldflags`
* Default to Spack's copy of GASNet-EX, which is newer than embedded
2024-06-02 16:59:13 +02:00
Dan Bonachea
9c5a70ab6c gasnet: add v2024.5.0 (#44478)
* Add GASNet v 2024.5.0

* cosmetic fix to info output

* Add a missing dependency

* Ensure GASNet detects the provided ROCm/CUDA dependency

* [@spackbot] updating style on behalf of bonachea

---------

Co-authored-by: bonachea <bonachea@users.noreply.github.com>
develop-2024-06-02
2024-06-01 16:04:45 -07:00
Rocco Meli
5ef58144cb py-fortls: add v3.1.0 (#44477)
* Spglib: add version 2.4.0

* DLA-Future: fix +test option

* update

* [@spackbot] updating style on behalf of RMeli

* Apply suggestions from code review

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: RMeli <RMeli@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01 15:01:47 -05:00
Filippo Spiga
41ddbdfd90 gmsh: add v4.11.1, master (#41320)
* Adding gmsh 4.11.1

* Becoming a maintainer

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01 11:30:25 -06:00
Rocco Meli
66924c85a3 py-griddataformats: add v1.0.2 (#44475)
* update

* Apply suggestions from code review

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-06-01 10:52:17 -05:00
snehring
a4c3fc138c apptainer: adding version 1.3.1 (#44104)
e2fsprogs: adding version 1.47.0 and fuse2fs variant
fuse-overlayfs: adding version 1.13
squashfuse: adding version 0.5.1 and 0.5.2
e2fsprogs: fixing audit errors
apptainer: expanding deps to cover more versions, fix binary_path logic.
apptainer: add go version deps, fix e2fsprogs patch sums, rework dep paths
fuse-overlayfs: tightening up the libfuse dep

Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-06-01 01:03:35 -06:00
Matt Thompson
62ed2a07a7 mapl: add 2.46.2, 2.40.5 (#44466) 2024-05-31 22:21:12 -06:00
James Taliaferro
e7aec9e872 pass: new package (#44454)
* New package: password-store

* add bash completion as variant

* also patch the cygwin platform snippet

* update description and maintainers

* make completions implicit and don't overwrite the completions package

* remove completion option

* formatting

* clean up file filter syntax

* remove reference to completion variant

* remove dependency on bash-completion

* clarify comments

* bashcompdir is already the default

* add optional dependency on xclip

* fix formatting
2024-05-31 18:05:06 -06:00
snehring
b065c3e11e ruby: adding version 3.3.2 (#44447)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-31 17:39:09 -06:00
Lucas Frérot
88b357c453 tamaas: adding new versions and python install fix (#44469)
* tamaas: install python extension with explicit pip call
* tamaas: patching compilation issues with recent compilers
* tamaas: added versions 2.7.0 and 2.7.1
2024-05-31 16:02:24 -07:00
Ryan Mulhall
bb7299c04a add in the latest versions of FMS (#44471)
Co-authored-by: rem1776 <rem1776@github.com>
2024-05-31 16:00:39 -07:00
Raffaele Solcà
7a5bddfd15 dla-future: Add 0.5.0 (#44463)
* add dla-future@0.5.0

* [@spackbot] updating style on behalf of rasolca

* fix typo

* review suggestions

---------

Co-authored-by: rasolca <rasolca@users.noreply.github.com>
2024-05-31 13:53:37 -06:00
potter-s
50fe769f82 Updated version (#44461)
Co-authored-by: Simon Potter <sp39@sanger.ac.uk>
2024-05-31 13:44:00 -06:00
Wouter Deconinck
29d39d1adf util-macros: ensure url_for_version works for older versions (#44421)
* util-macros: ensure url_for_version only used for older versions
* util-macros: use url.substitute_version after xz -> bz2
* util-macros: mv url_for_version down the file
2024-05-31 12:36:44 -07:00
Lydéric Debusschère
8dde7f3975 py-junit2html: new package, version '31.0.2' (#44399)
* py-junit2html: new package, version '31.0.2'
* py-junit2html: install from sources instead of from wheel
2024-05-31 12:36:02 -07:00
renjithravindrankannath
0cd038273e Bump-up rocm-opencl with 6.1.0 & 6.1.1 and adding hsa library path in LD_LIBRARY_PATH (#44171)
* Adding hsa library path in LD_LIBRARY_PATH
* Prepending instead of setting LD_LIBRARY_PATH to hsa-rocr-dev/lib
* adding rocm-opencl 6.1.0 & 6.1.1 updates
2024-05-31 12:30:55 -07:00
Matt Schramm
1f5bfe80ed Updates meep to latest release 1.29.0 (#44468) 2024-05-31 12:10:30 -07:00
Hartmut Kaiser
4d2611ad8a Adding HPX v1.10.0 to package (#44470) 2024-05-31 12:08:52 -07:00
jmuddnv
21a97dad31 Changes for NVIDIA HPC SDK 24.5 (#44354) 2024-05-31 10:32:39 -07:00
jdomke
338a01ca6d fujitsu-mpi: point MPI compiler wrappers to Spack compiler wrappers (#44457)
Using OMPI_ environment variables, like openmpi does.
2024-05-31 09:39:51 -06:00
Harmen Stoppels
392396ded4 traverse: pass key correctly (#44460)
Fixes a bug where custom keys to identify nodes were not passed
correctly.
2024-05-31 08:26:38 -07:00
Wouter Deconinck
a336e0edb7 py-numexpr: add v2.8.8, v2.9.0 (#44451) 2024-05-31 08:34:19 -06:00
Satish Balay
9426fefa00 petsc4py: fix typo with version (#44452) 2024-05-31 08:24:16 -06:00
Tom Bradford
812192eef5 protobuf: fix 3.4:3.21 patch checksum (#44443) 2024-05-31 13:59:49 +02:00
Rocco Meli
b8c8e80965 dla-future-fortran: fix +test option (#44458)
* Spglib: add version 2.4.0

* DLA-Future: fix +test option
2024-05-31 11:18:52 +02:00
Alberto Invernizzi
77fd5d8414 paraview: update cuda_arch management (#44243)
* refactor logic to switch to cmake for cuda management
2024-05-30 23:33:38 -05:00
Tom Bradford
82050ed371 corrected the vmd 1.9.3 tarball checksum (#44433) 2024-05-30 17:02:55 -07:00
John W. Parent
a7381a9413 Bootstrapping: don't use Mac OS binaries on Windows (#44193)
`BuildcacheBootstrapper` uses `Spec.intersects` to match specs needed
for bootstrapping against the binary cache. The specs were not
sufficiently-detailed to prevent matching e.g. cached binaries for
Mac OS on Windows; this commit adds the platform to each requested
bootstrap spec to prevent that.
2024-05-30 17:10:29 -06:00
Alec Scott
b932783d4d unmaintained pkgs: bump versions 2024-05-20 (#44274)
* unmaintained pkgs: bump versions 2024-05-20

* seqkit: revert changes

* msgpack-c: add dependency on boost

* msgpack-c: revert to test neovim

* revert: parallel, openblas, and re2c due to conflicts

* gmsh: revert changing version

* trilinos: limit version of suite-sparse to fix build

* gtkorvo-atl: deprecate develop before remove

* msgpack-c: deprecate v1.4.1

* msgpack-c: fix style

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-30 13:27:11 -06:00
Teague Sterling
0b51f25034 Package/gettext: Old version issues (#44440)
gcc@:5 hits https://savannah.gnu.org/bugs/index.php?65811 in gettext@0.22:

also fix patch of configure script

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-05-30 12:35:20 -06:00
Sreenivasa Murthy Kolam
d6a182fb5d Bump-up the version for RoCm-6.1.1 release (#44178)
* initial commit for RoCm-6.1.1 release

* fix style issues

* update the version for rocmlir and rocm-cmake

* restrict the patch for 6.0.0 release

* fix build failure for hipsolver-6.1.1 release

* update the hipblaslt for rocm-6.1.1 release

* add the patch for hipsparselt for 6.1.1 rel
2024-05-30 08:57:43 -07:00
Satish Balay
e8635adb21 petsc, py-petsc4py: add v3.21.2 (#44439) 2024-05-30 07:10:24 -07:00
Massimiliano Culpo
f242e0fd0c remove platform=cray (#43796)
Remove support for `cray` as a separate platform.

Any platform previously detected as `cray` is now detected as `linux`.

Users who still need platform=cray have to stick to Spack 0.22
2024-05-30 14:21:32 +02:00
renjithravindrankannath
67b5f6b838 rocm-validation-suite: custom patch update for lib and lib64 yaml library path (#44287) 2024-05-30 09:06:57 +02:00