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7088 Commits

Author SHA1 Message Date
Satish Balay
5b5e00aaa9 petsc4py: add verson 3.11.0 (#11186) 
Also added maintainers
 2019-04-15 09:54:40 +02:00
Mark C. Miller
1ae7477d20 Update FASTMath metapackage (#11171) 
* Limit to FASTMath-only packages
* Replace boxlib with amrex

As requested by @asalmgren
 2019-04-12 16:54:19 -05:00
Satish Balay
832a1ddbaa
petsc: add fftw variant (#11178) 2019-04-12 09:46:23 -05:00
Satish Balay
1eab6e3c86
petsc: add version 3.11.1 (#11179) 2019-04-12 09:45:43 -05:00
Owen Solberg
227f9c9026 py-deeptools: adding release 3.2.1 sha256 sum (#11174) 2019-04-12 09:45:04 +02:00
Satish Balay
6b09781936
xsdk@develop: enable amrex@develop+sundials (#11169) 2019-04-11 12:16:23 -05:00
Cody Balos
0d0358733d amrex: add sundials variant (#11147) 2019-04-11 10:43:11 -05:00
brietzke
d0e281e201 libxsmm package: add variant to build generator executables (#11114) 2019-04-10 16:34:38 -07:00
clellsolomon
7ec12c59ab fzf package: change mirror and add vim plugin (#10920) 
This commit edits the Makefile to use github.com mirrors rather than the
default mirrors of the dependency packages installed by GO.
 2019-04-10 16:23:37 -07:00
Chuck Atkins
f1bdaa11d4 New Packages: ecp-io-sdk and ecp-viz-sdk (#11073) 2019-04-10 16:18:05 -07:00
Eric Martin
8f1ebfc73c py-requests: Add missing dependencies for versions 2.16.0 and up (#10996) 2019-04-10 15:38:28 -07:00
Patrick Gartung
a5315f3878
Fix bug when system perl is used. (#11034) 
* Fix bug when system perl is used.

If system perl is being used through packages.yaml there cannot be dependent modules.
The  setup_dependent_packages function should not do anything in that case.
 2019-04-10 08:44:27 -05:00
Denis Davydov
1e9748a3c8 dealii: fix build with tbb from intel parallel studio (#11138) 2019-04-10 14:51:38 +02:00
Denis Davydov
b2611c8086 suite-sparse: fix tbb patching (#11155) 2019-04-10 09:21:54 +02:00
Michael Kuhn
1ac576923f libfabric: Add 1.7.1 (#11141) 2019-04-09 18:38:15 -05:00
Matthias Diener
687a7db73f wget: add version 1.20.3 (#11148) 2019-04-09 18:37:04 -05:00
Denis Davydov
1f1ea2c859 intel: consolidate libs() in the base class (#11143) 
* intel: consolidate libs() in the base class

* white space

* flake8
 2019-04-09 13:54:21 -07:00
Denis Davydov
82455a30d0 openmpi: add 4.0.1 (#11126) 
* openmpi: add 4.0.1

* openmpi: enable-mpi1-compatibility for 4.0.1 and above

* remove preferred

* make 3.1.3 preferred
 2019-04-09 21:41:14 +02:00
Satish Balay
a9bf3bdd6a
xsdk@develop: enable hypre shared (even on OSX) and superlu-dist variant (#11131) 2019-04-09 08:42:44 -05:00
Owen Solberg
c6a7d0db03 cdhit - add new release 4.8.1 checksum (#11130) 2019-04-09 10:33:07 +02:00
Satish Balay
6e78730a97 mumps: add version 5.1.2 (#11132) 
Add patch for gfortran-8 runtime errors
 2019-04-09 10:28:41 +02:00
Patrick Gartung
aac3799d2c
Unset SPACK_INCLUDE_DIRS so the compiler wrapper does not prepend any -I flags. The assumption is that cmake will set the correct include flags. (#11129) 2019-04-08 14:30:22 -05:00
Michael Kuhn
db98f16382 zfp: Add 0.5.4 (#11016) 2019-04-08 09:11:28 +02:00
thelfer
3b5d7bfa99 Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). (#11109) 2019-04-08 09:09:14 +02:00
Cameron Smith
0e04410044 kokkos: update cuda conflict (#11110) 
see https://github.com/spack/spack/pull/10943#issuecomment-475303870
 2019-04-08 08:58:35 +02:00
Levi Baber
6e4b234d13 sra-toolkit new version (#11111) 2019-04-08 08:56:49 +02:00
Satish Balay
d11b1b18f0
netlib-scalapack: fix compatibility with mpi2 i.e openmpi-4 (#11124) 2019-04-07 10:01:54 -05:00
Abhinav Bhatele
ed66ccb6f2 ecp-proxy-apps: update version (#11119) 2019-04-06 15:33:29 -07:00
Satish Balay
90c7c74334
hypre: disable variant superlu-dist default (#11097) 2019-04-05 21:11:36 -05:00
Gregory Lee
af3e91926a fixes py-basemap package (#11104) 
* fixes py-basemap package
* remove basemap mpl_toolkit __init__.py
 2019-04-05 11:27:23 -07:00
Patrick Gartung
f1f582714c
Set Geant4 cmake module path environment variable in dependents. (#11112) 2019-04-04 13:09:13 -05:00
Marco Comparato
553acbbe3d xcb-util-wm: add m4 build system dependency (#11056) 2019-04-04 13:11:02 +02:00
Abhinav Bhatele
8da6593e43 miniamr: add develop version and update release (#11101) 
* miniamr: add develop version and update release

* change from url to git

* add url back
 2019-04-03 16:17:04 -06:00
Abhinav Bhatele
5f3620f7ac raja: add newer versions (#11102) 2019-04-03 12:09:45 -06:00
Abhinav Bhatele
b2a2c31883 laghos: update dependencies (#11100) 2019-04-03 11:22:40 -06:00
Abhinav Bhatele
af2d166adf AMG: update version (#11099) 2019-04-03 11:11:06 -06:00
Phil Carns
03bb6500f3 fio package: add optional libaio dependency (#11083) 2019-04-02 18:21:45 -07:00
Neil Flood
c3e5c9981a proj package: add versions 5.2.0 and 5.1.0 (#11079) 
* Add versions 5.2.0 and 5.1.0
* Avoid adding version 6.0.0: this version has a new API that is
  not compatible with older versions (and dependents may break with
  it)
* Added comment block explaining the problems with version 6.x
* Replace old datumgrid resource (1.7) with new (1.8)
* Add speculative sqlite dependency for when a 6.x version is added
 2019-04-02 18:18:56 -07:00
Elsa Gonsiorowski, PhD
9b5ce67f1e ross package: add version 7.0.1 (#11078) 
* add version 7.0.1
* replace md5 with sha256 for various versions.
* v7.0.1 fixes some environment hacking to properly find MPI and
  system architecture
 2019-04-02 17:50:41 -07:00
Ryan S. Elliott
3c641f47cd kim-api and openkim-models: version update and rename (#11065) 2019-04-02 17:44:24 -07:00
Jon Rood
0cb08e42f5 Trilinos: Add Tpetra_INST_INT_LONG_LONG to explicit template instantiation (#11060) 2019-04-02 17:38:52 -07:00
Seth R. Johnson
f237c81060 openmpi: Add stub mpirun script for openmpi~legacylaunchers+slurm (#11059) 
This adds a stub script for mpirun and other standard executables
when installing OpenMPI with slurm. The purpose is to make the
removal less of a surprise to administrators/users: it explains why
they were removed and how to restore them.
 2019-04-02 17:34:25 -07:00
Justin Stanley
3988732ef4 r-hoardr: new package at 0.5.2 (#11051) 2019-04-02 17:28:05 -07:00
Justin Stanley
6500310b08 r-roxygen2 package: added 6.1.1, more dependencies (#11045) 2019-04-02 17:27:04 -07:00
Justin Stanley
f459bba322 r-rhmmer: new package at 0.1.0 (#11050) 2019-04-02 17:25:55 -07:00
Justin Stanley
f5d61f8f58 r-commonmark: new package at 1.7 (#11049) 2019-04-02 17:22:42 -07:00
Justin Stanley
8710203e08 r-pkgload: new package at 1.0.2 (#11047) 2019-04-02 17:21:55 -07:00
Justin Stanley
6ac99f6275 r-desc: new package at 1.2.0 (#11048) 2019-04-02 17:10:24 -07:00
Justin Stanley
e094821a54 r-pkgbuild: new package at 1.0.3 (#11046) 2019-04-02 17:09:59 -07:00
Denis Davydov
ecde4502f2 arpack-ng package: add version 3.7.0 (#11041) 2019-04-02 17:08:16 -07:00
Gregory Lee
8625faefc9 mvapich2 package: add version 2.3.1 (#11037) 2019-04-02 17:07:06 -07:00
Dustin Lagoy
229ed5c228 netcdf-cxx package: set ldflags for hdf5 and netcdf (#11026) 
Ensure that netcdf-cxx uses the Spack-installed hdf5 and netcdf4
rather than system-installed versions.
 2019-04-02 17:04:09 -07:00
Jon Rood
bc4c372ebd nalu-wind package: require hypre without superlu-dist. (#11022) 2019-04-02 17:02:22 -07:00
Eric Martin
6d6bc8010f picard package: Add version 2.19.0 (#11018) 2019-04-02 17:01:17 -07:00
Matthias Wolf
9fc4489ee1 py-arrow and arrow: add version 0.12.1 (#11004) 
Also constrain the py-arrow version to depend on the same version
of arrow (e.g. 0.12.1 of py-arrow depends on 0.12.1 of arrow)
 2019-04-02 17:00:04 -07:00
Christoph Junghans
27a72cf7fe
branson: fix install (#11093) 2019-04-02 16:44:46 -06:00
Christoph Junghans
81f1bd7732
nut: fix install (#11092) 2019-04-02 16:38:03 -06:00
Christoph Junghans
7a28a61a59
miniqmc: fix install (#11091) 2019-04-02 16:23:37 -06:00
Christoph Junghans
356b5df715
kripke: fix install (#11090) 2019-04-02 16:05:21 -06:00
Christoph Junghans
82be3a4668
hacckernels: fix install (#11089) 2019-04-02 15:58:40 -06:00
Christoph Junghans
4ff3ce494a
macsio: fix install (#11088) 2019-04-02 15:58:21 -06:00
Vanessasaurus
b08518dadd adding package to install squashfs for singularity (#11077) 
* adding package to install squashfs for singularity

* dont need os import

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>

* updating md5 to sha1 for squashfs package

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>

* two blank lines

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
 2019-04-02 12:33:23 -05:00
Gregory Lee
007e168b9e add pkgconfig as dependence for flux packages (#11036) 2019-04-01 18:33:55 +02:00
Nichols A. Romero
0ccc69411b QMCPACK MKL buglet. Now you are able to use the Intel compiler with other BLAS and LAPACK providers, no longer forced to use MKL. (#11019) 2019-03-31 19:31:59 -05:00
Matthias Diener
6034ddfed8 cmake: add version 3.14.1 (#11063) 2019-03-31 19:22:59 -05:00
Satish Balay
4946e1d0a2
petsc: update superlu-dist dependency (#11068) 2019-03-31 12:20:15 -05:00
Satish Balay
7eb734c4d9
slepc: add versions 3.10.2 and 3.11 (#11067) 2019-03-31 12:19:58 -05:00
Satish Balay
650a15436b
superlu-dist: add version 6.1.1 (#11066) 2019-03-31 12:19:43 -05:00
Denis Davydov
def5b23763 add libs property to IntelMkl and IntelParallelStudio (#10993) 
* add libs property to IntelMkl and IntelParallelStudio
* fix scalapack_libs when MPI is provided by intel-parallel-studio
 2019-03-29 13:01:43 -07:00
Satish Balay
03d39ed34c
petsc: add versions 3.10.5, 3.11.0 (#11058) 2019-03-29 11:54:23 -05:00
Kelly (KT) Thompson
b2b91a1f00 Random123 - provide a patch to fix compiles with IBM XL (#11028) 
* Newer versions of IBM XL no longer define `__xlC__`, but define `__ibmxl__`
  instead.  This one-line patch fixes this problem in Random123.
* This patch was also provided to the Random123 maintiners
  (Random123@DEShawResearch.com). I don't expect a new release from them for a
  while, so I believe that this patch is the correct path forward (for now).
 2019-03-28 17:20:28 -05:00
Satish Balay
06e82edf15
hypre: add a modified superlu-dist patch for @:2.14.0 (#11032) 2019-03-28 14:57:51 -05:00
Elsa Gonsiorowski, PhD
8a4e762bec libyogrt package: add versions, scheduler support (#10884) 
* Add latest libyogrt versions
* Add url_for_version to handle differing url formats for different
  versions
* Add 'scheduler' variant to configure scheduler. Currently only
  slurm can be installed with Spack. A value of 'system' indicates
  to use the scheduler installed on the system
 2019-03-27 10:25:31 -07:00
Michael Kuhn
7df70154dd lzo package: add version 2.10 (#11015) 2019-03-26 15:40:48 -05:00
Michael Kuhn
44311da0de c-blosc package: add version 1.16.3 (#11014) 2019-03-26 15:40:24 -05:00
Justin Stanley
35d439b1f7 beast1 package: add version 1.10.4, use url_for_version (#11009) 2019-03-26 15:39:42 -05:00
Gregory Lee
d2bd4f86dd py-netcdf package: add py-cftime dependency (#11005) 2019-03-26 15:39:10 -05:00
Eric Martin
69bd67385c py-xopen: Add version 0.5.0 (#10995) 2019-03-26 15:32:09 -05:00
Mark W. Krentel
675bb23431 intel-xed package: add versions 2019.03.01 and develop (#10987) 
Also add conflicts for PPC
 2019-03-26 15:31:28 -05:00
ajw1980
7a4712b90a New package: py-scikit-optimize (#10973) 2019-03-26 15:10:35 -05:00
ajw1980
48a8ee0363 New package: py-pyodbc (#10972) 2019-03-26 15:09:55 -05:00
ajw1980
99a51e7ed1 New package: py-luigi (#10970) 2019-03-26 15:08:20 -05:00
ajw1980
40121eddd9 Py-jupyter package: dependency fixes (#10966) 
* py-prompt-toolkit: Add newer version for required for newer
  py-ipython versions
* py-ipykernel:
  * Add newer py-ipykernel version
  * Depend on py-setuptools so a python egg isn't attempted to be
    built
  * Update dependency for newer py-ipykernel versions
* py-jupyter-console: Remove py-prompt-toolkit dependency since it is
  picked up in py-ipython
* py-ipython:
  * Add missing py-backcall dependency
  * Adjust py-prompt-toolkit dependencies for newer versions of
    ipython
* py-jupyter-notebook: Require newer version of py-ipykernel since
  jupyter is broken with previous versions
 2019-03-26 15:05:39 -05:00
ajw1980
9437cf88f0 node-js package: Depend on zlib when +zlib (#10965) 2019-03-26 14:43:30 -05:00
ajw1980
994b8afedc py-numba package: Depend on py-setuptools so an egg isn't built (#10964) 2019-03-26 14:42:57 -05:00
ajw1980
4b76602914 py-dateutil package: add version 2.7.5 (#10961) 2019-03-26 14:42:31 -05:00
ajw1980
6a6a51922f py-pytz package: add version 2018.4 (#10959) 2019-03-26 14:41:09 -05:00
Justin M Wozniak
4719bf25dd r-rinside package: add version 0.2.15 (#10949) 2019-03-26 14:37:49 -05:00
Brian Spilner
308a39eca3 ruby package: add version 2.6.2 (#10945) 2019-03-26 14:34:33 -05:00
Andrew Gaspar
1e6da47b4e Kokkos package: pthreads feature and new kokkos versions (#10943) 2019-03-26 14:31:48 -05:00
Chris Green
670ef9bd7c nix package: improve dependencies based on prerequisites from manual. (#10927) 2019-03-26 13:39:40 -05:00
Michael Kuhn
63ddc44db6 ior package: Add patch to fix 3.2.0 with hdf5 (#10923) 2019-03-26 13:36:54 -05:00
fcannini
f08c9aa601 quantum-espresso: Enable EPW installation (#10637) 2019-03-26 13:33:10 -05:00
Chris Green
763549fe7c mysql: Support client-only, cxxstd and more versions (#10911) 
* add cxxstd variant
* add CMake constraints based on platform/version
* add older versions
* update boost dependency version constraints (which are closely
  tied to mysql version) and update boost cxxstd choice to be
  the same as the cxxstd chosen for mysql
* add client-only support (including a patch for 5.5.x)
* record the mysql package as a provider of the mysql-client virtual
 2019-03-26 13:19:06 -05:00
Chris Green
1bd8c0c460 boost: Fix build of versions < 1.62.0 (#10910) 
Improve management of the Fiber library and C++ standard support:

* Remove Fiber from list of libraries to build
* Improve variant management for Fiber; add variants for Context and
  Coroutine libraries.
* Add known conflict with C++17 for boost < 1.63.0
* Remove C++ standard "default" option, which left the choice of
  C++ standard to the compiler used to build boost
 2019-03-26 12:50:06 -05:00
Michael Kuhn
8434e7803d lz4: Add 1.8.3 (#11013) 2019-03-26 15:34:25 +01:00
Michael Kuhn
58d186fc00 zstd: Add 1.3.8 (#11012) 2019-03-26 15:33:26 +01:00
clellsolomon
31d7df7860 ninja-fortran package: add newer versions (#10921) 2019-03-25 20:38:45 -05:00
bfovet
cc2ff82027 New package: MMG (#10902) 2019-03-25 20:24:40 -05:00
Dustin Lagoy
14acfb65c4 netcdf-cxx package: Add optional netCDF4 support (#10899) 2019-03-25 20:22:15 -05:00