Commit Graph

35153 Commits

Author SHA1 Message Date
Jim Galarowicz
a913ed229d Restore openspeedshop and openspeedshop-utils, update the cbtf components (#35052) 2023-02-06 16:10:41 +01:00
Vanessasaurus
7c122da48b flux-core: add missing dependency(#35312) 2023-02-06 06:29:30 -08:00
Glenn Johnson
fdaa54941d r-cvxr: add new package with dependencies (#35275) 2023-02-06 15:13:37 +01:00
Wouter Deconinck
135832650f qt: new version 5.15.8 (#35352)
No build system changes, just bug fixes.

https://github.com/qt/qtbase/compare/v5.15.7-lts-lgpl...v5.15.8-lts-lgpl

Builds fine on linux-ubuntu22.10-skylake.
2023-02-06 06:12:57 -08:00
Stephen Sachs
29d710fdec wrf: add optional netcdf_classic variant (#35261)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-02-06 15:12:32 +01:00
Mikael Simberg
13c4f92907 hpx: further constrain version for mimalloc patch (#35257) 2023-02-06 15:10:08 +01:00
Erik Schnetter
7a2c9601e8 reprimand: add v1.5 (#35245)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-02-06 15:08:08 +01:00
Harmen Stoppels
31959b72b0 bump: nss + dep (#35294) 2023-02-06 15:06:16 +01:00
Erik Heeren
8109877424 amdlibflame: needs modern make (#35297)
See https://github.com/flame/libflame/issues/55
2023-02-06 15:05:16 +01:00
snehring
91243ecb5b tau: updating python version restriction (#35268)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-06 14:58:04 +01:00
William Moses
1fc2bf846d enzyme: add v0.0.48 (#35304) 2023-02-06 14:56:46 +01:00
Vasileios Karakasis
848344d9a5 ReFrame: add versions up to v4.0.4 (#35330) 2023-02-06 14:39:47 +01:00
Cameron Smith
e08da4e2b6 pumi and zoltan: allow building when no fortran compiler is available (#35333) 2023-02-06 14:35:44 +01:00
Wouter Deconinck
75a72766ff assimp: new version 5.2.5 (#35335)
Bugfix release only. No build system changes.
2023-02-06 14:34:15 +01:00
Wileam Y. Phan
797e230498 intel-gtpin: add v3.2.2 (#35342) 2023-02-06 13:51:03 +01:00
Wouter Deconinck
1c6993145e libdrm: new versions 2.4.111-114 (#35343)
As of 2.4.113, the flag for man-pages is now a feature,
so true/false is now enabled/disabled. Other similarly
changed options are not used in the spack recipe (i.e.
experimental kms drivers).
2023-02-06 13:28:18 +01:00
Wouter Deconinck
00573d6ea2 sherpa: new version 2.2.14 (#35344)
"Version 2.2.14 contains a critical bug fix"
2023-02-06 13:12:19 +01:00
Luke Diorio-Toth
4c0116bd64 mash: added patch with limits header (#35209)
Co-authored-by: luke <luke@DESKTOP-E4JNTC1.attlocal.net>
2023-02-06 13:08:31 +01:00
Rémi Lacroix
f0d8355248 libxc 6.0.0: fix a bug affecting CP2K (#35347)
The patch fixes a missing comma at end of line in mgga_xc_b97mv.c.
2023-02-06 13:05:13 +01:00
Rémi Lacroix
01c21d0496 n2p2: add v2.2.0. (#35348) 2023-02-06 13:03:05 +01:00
Adam J. Stewart
43057e2edd py-numpy: add v1.24.2 (#35350) 2023-02-06 12:38:34 +01:00
Mikael Simberg
ba8d9f22ef Add pika 0.12.0 and pika-algorithms 0.1.1 (#35296) 2023-02-06 12:32:57 +01:00
Wouter Deconinck
07d7c32d79 qt: new versions 6.4.0, 6.4.1, 6.4.2 (#34698)
* qt: new versions 6.4.0, 6.4.1

- New libpsl vendored dependency in qt-base.
- New embree and tinyexr dependency in qt-quick3d.

We need to figure out a better way to deal with these vendored
dependencies in src/3rdparty. Removing them was a way to make sure
they are not used unintentionally. Many of these dependencies cannot
be overridden with a QT_FEATURE_system_* flag and are included directly
in cpp files. Many change versions from release to release, so even if
they use system (ie spack managed) versions we need to support this in
the depends_on lines.

What we can rely on?
- src/3rdparty is where vendored stuff is stored
- not much else...

Possible ways to deal with this:
- Change vendor_deps_to_keep to dict with versions, eg
```
vendor_deps_to_keep = {
    "xatlas": "@6:",
    "embree": "@6.4:",
    "tinyexr": "@6.4:",
}
```
- Similarly introduce system_deps_to_use:
```
system_deps_to_use = {
    "assimp@5.2:": "@6:",
}
```
and derive depends_on and QT_FEATURE_system_* from this dict.

* qt-*: new version 6.4.2, invert vendored pkgs logic

* qt-base: fix vendor_deps_to_avoid typo

* qt-*: move lots into QtPackage base layer
2023-02-05 22:38:05 -05:00
Massimiliano Culpo
017a15988c Don't use CDash upload URL as report filename (#35338)
fixes #35337
2023-02-05 12:58:45 +01:00
Cameron Rutherford
1ad290e5a2 Require 0.7.1 for ExaGO 1.5.0+. (#35331) 2023-02-03 22:10:14 -08:00
eugeneswalker
f6fa64f979 ci: add minimal gpu testing stack (#35251)
* ci: add minimal gpu testing stack

* kokkos +cuda requires +wrapper...

* require pass

* add raja+cuda
2023-02-03 18:33:34 -08:00
John W. Parent
1826a41cdd MSVC compiler: add platform toolset version (#35098) 2023-02-03 17:53:24 -08:00
Massimiliano Culpo
509a8ea5e2 py-packaging: add constrain on python version (#35325) 2023-02-03 19:00:23 +01:00
Erik Heeren
ca202ba11e py-igor: new package (#35229)
* py-igor: new package

* py-igor: review remarks
2023-02-03 09:02:43 -07:00
Erik Heeren
0b1d51e450 Add py netpyne, meautility, and lfpykit (#35262)
* py-netpyne: new package with dependencies

* py-netpyne, py-meautility, py-lfpykit: license update

* py-netpyne: review remarks

* py-netpyne: style

* py-netpyne: don't limit python version
2023-02-03 09:29:30 -06:00
Manuela Kuhn
2936573fc6 py-glmsingle: add 1.1 (#35311) 2023-02-03 09:28:16 -06:00
Rémi Lacroix
5d4c250354 CMake: Add version 3.25.2 (#35196) 2023-02-02 20:27:56 -08:00
Adam J. Stewart
b0913b1bf8 py-torchmetrics: add v0.11.1 (#35260) 2023-02-02 18:32:46 -08:00
John W. Parent
c49e2e5620 NMake builder: fix incorrect variable reference (#34937) 2023-02-02 16:34:35 -08:00
Adam J. Stewart
60624265f8 py-black: add v23.1.0 (#35279)
* py-black: add v23.1.0
* py-packaging: add v23.1.0
2023-02-02 14:32:37 -08:00
Larry Knox
79aa9e9c87 Update to latest version. (#35309)
Update hdf5-vol-external-passthrough to latest version compatible with HDF5 1.14
2023-02-02 16:16:56 -06:00
Wouter Deconinck
f2b0c1deab py-minkowskiengine: new package (sparse tensor autodiff by Nvidia) (#35302)
* py-minkowskiengine: new package (sparse tensor autodiff by Nvidia)

This python package (with cuda support) provides torch support for sparse
tensors. The `pybind11` headers are not found without the patch to `setup.py`.

* [@spackbot] updating style on behalf of wdconinc

* py-minkowskiengine: depends_on numpy, pybind11 type=link; no patch

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-02-02 16:03:01 -06:00
John W. Parent
7d50680d9c zlib package: fix build on Windows (#35103) 2023-02-02 13:53:16 -08:00
snehring
defa4a2340 py-getorganelle: rename to getorganelle and add version 1.7.7.0 (#35270)
* py-getorganelle: rename to getorganelle and add version 1.7.7.0

* py-getorganelle: deprecating package
2023-02-02 13:13:32 -06:00
Manuela Kuhn
1e1d1ec43b py-nilearn: add 0.10.0 (#35303) 2023-02-02 13:02:19 -06:00
Rémi Lacroix
0e41788812 LAMMPS: Package KIM requires CURL after version 20190329 (#35182) 2023-02-02 06:12:27 -08:00
Massimiliano Culpo
ddecf07045 Use the maintainers directive in all packages (#35201) 2023-02-01 21:07:25 -08:00
Weiqun Zhang
9865a42b20 amrex: add v23.02 (#35286) 2023-02-01 15:32:38 -08:00
Jordan Galby
2432be5911 glib: 2.74: needs pcre2@10.34: (#35283) 2023-02-01 12:53:03 -08:00
Timothy Brown
002bd8d20b [WRF] Adding new versions (#35244)
* [WRF] Adding new versions.
* Style fixes.
2023-02-01 12:29:35 -08:00
Glenn Johnson
eac04af0e7 fastqc: Use the spack built perl (#35276)
The fastqc script was using the system perl. This PR sets the script to
use the spack built/provided perl. This PR also removes the code that
adds the java path. That should be handled by module loading as far as I
know.
2023-02-01 09:47:10 -08:00
Larry Knox
448bd31c87 Add hdf5 versions 1.14.0, develop-1.14 and update develop version from develop-1.13 to develop-1.15 (#34734)
* Add HDF5 version 1.13.3.

* Remove maintainers no longer with The HDFGroup.

* Add version hdf5-vol-async@1.4

* Add HDF5 version 1.14.0, develop-1.14, develop-1.15.
Add missing conflicts for api version and develop versions.

* Add conflicts statement to hdf5/package.py to avoid building hdf5 with
MPICH 4.0.x versions with bug that causes testphdf5 test to fail.

* Add patch to call find_package(MPI) for dependent packages not finding
it, not having called it themselves.

* Remove language components from find_package(MPI) in
hdf5_1_14_0_config_find_mpi.patch.

* Add HDF5 version 1.14.0, develop-1.14, develop-1.15.
Add missing conflicts for api version and develop versions.

* Add conflicts statement to hdf5/package.py to avoid building hdf5 with
MPICH 4.0.x versions with bug that causes testphdf5 test to fail.

* Add patch to call find_package(MPI) for dependent packages not finding
it, not having called it themselves.

* Remove language components from find_package(MPI) in
hdf5_1_14_0_config_find_mpi.patch.

* Don't guard ParaView patch on HDF5 variant

ParaView always needsd  HDF5 and ignores the variant.

* py-h5py: Newer versions of HDF5 introduce breaking API changes

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-02-01 09:17:17 -06:00
Massimiliano Culpo
46466302a9 Pin black to 22.12.0 to avoid spurious style changes (#35282)
We need to sync changes on major versions with
spackbot, to avoid the bot saying everything is
allright and have CI failing nonetheless.
2023-02-01 15:45:12 +01:00
Erik Heeren
5e39acea16 py-equation: new package (#35198)
* py-equation: new package

* py-equation: add variants for extra dependencies
2023-02-01 00:02:11 -06:00
Thomas Bouvier
cfdf0b6987 nccl: v2.15.5-1, v2.16.2-1 (#35248)
* `nccl`: v2.15.5-1, v2.16.2-1
* Fix wrong sha256
* Revert checksums (after GitHub has algorithm change reverted)
2023-01-31 19:17:20 -08:00