Commit Graph

12570 Commits

Author SHA1 Message Date
t-nojiri
cb218058bc fraggenescan: Modify build_targets for aarch64 (#18687) 2020-09-16 10:40:33 -05:00
Xavier Delaruelle
0b3e860608 environment-modules: add version 4.6.0 (#18686) 2020-09-16 10:39:55 -05:00
Robert Pavel
2f0565de64 Added spackage for cosmoflow-benchmark proxy app (#18685)
* Initial Draft of Cosmoflow Spackage

Need to add in logic to streamline cpu/gpu builds

* Added ~cuda logic to cosmoflow spackage

Added logic to support a ~cuda build for cosmoflow

* Requested Changes to Cosmoflow Spackage

Made requested changes to cosmoflow spackage
2020-09-16 10:18:01 -05:00
Severin Strobl
e41c3ad1fc Likwid versions >= 5.0.0 depend on Lua 5.2. (#18675)
* Likwid versions >= 5.0.0 depend on Lua 5.2.

According to https://github.com/RRZE-HPC/likwid/issues/324 recent
versions of Likwid require Lua 5.2.

* Update var/spack/repos/builtin/packages/likwid/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-16 10:16:08 -05:00
Jason Lee
1a9f97fd0d jemalloc: Use AutotoolsPackage and allow for arbitrary public API prefixes (#18680)
Removed je variant
2020-09-15 20:37:05 -05:00
Greg Sjaardema
6a3583f181 MatIO: Update repository and add new versions (#18683)
MatIO development has switched to github from sourceforge.  Updated the `git` and `url` variables and added the four new versions (1.5.14 -- 1.5.17) that have been released since the last update of this package.
2020-09-15 16:43:45 -05:00
arjun-raj-kuppala
bad9f2bc28 AMD ROCmValidationSuite recipe for 3.5.0 and 3.7.0 (#18678)
* AMD ROCmValidationSuite recipe for 3.5.0 and 3.7.0

* Updated the PR comments for rocmvalidationsuite recipe
2020-09-15 13:16:41 -05:00
Nikolay Simakov
1b1bfd883a namd: Added optimization auto-selection for skylake-X+ CPU for 2.14 and 2.15a1 (AVX512 tile) (#18671) 2020-09-15 10:08:26 -05:00
Sergey Kosukhin
5cff304809 CLAW: update the package (#18673) 2020-09-15 10:04:59 -05:00
Tom Payerle
6752a1c377 Qbox minor issues 18664 (#18665)
* qbox: install to correct directory structure

* qbox: Have qb executable put in bin rather than src subdir

* qbox: Fix python script shebangs to use python from path

* qbox: Add dependencies on gnuplot, python2 for utilities

* qbox: fix flake8 issue

* qbox: Add $prefix/util to PATH
2020-09-15 09:54:26 -05:00
ketsubouchi
33e8dcad99 nseg: add return 0; to void functions (#18481) 2020-09-15 10:24:51 +02:00
Adam J. Stewart
5e6875008c fish: add dependencies, patch MacOS (#18526) 2020-09-15 08:43:53 +02:00
Adam J. Stewart
5f0c3427ae py-cmocean: added new package at v2.0 (#18614) 2020-09-15 08:36:26 +02:00
Adam J. Stewart
2af9e44340 Add setuptools run-time dependency to various Python packages (#18616) 2020-09-15 08:30:59 +02:00
Adam J. Stewart
b3ee04c6ef py-jupyterlab-pygments: added new package at v0.1.1 (#18627) 2020-09-15 08:30:08 +02:00
Adam J. Stewart
f7030287d3 py-nest-asyncio: add new package at v1.4.0 (#18629) 2020-09-15 08:28:51 +02:00
Adam J. Stewart
445988011c py-ipykernel: added v5.3.4, moved url to PyPI (#18630) 2020-09-15 08:28:17 +02:00
Adam J. Stewart
ef37852bb4 py-ipython: added v7.18.1 (#18631) 2020-09-15 08:26:27 +02:00
Adam J. Stewart
40a66317e8 py-jupyter-client: added v6.1.7, moved url to PyPI (#18632) 2020-09-15 08:25:39 +02:00
Adam J. Stewart
792c48a558 py-jupyter-core: updated the type of the setuptools dependency (#18633) 2020-09-15 07:42:28 +02:00
Adam J. Stewart
0448ade7b5 py-jupyterlab-server: added v1.2.0 (#18634) 2020-09-15 07:39:30 +02:00
Adam J. Stewart
defde398c4 py-argon2-cffi: added new package at v20.1.0 (#18626) 2020-09-15 07:38:16 +02:00
Adam J. Stewart
77d20906c0 py-jupyterlab: added v2.2.7 (#18635) 2020-09-15 07:20:15 +02:00
Adam J. Stewart
682223f1f4 py-nbformat: add v5.0.7, moved url to PyPI (#18637) 2020-09-15 07:18:12 +02:00
Adam J. Stewart
60a5a176fb py-terminado: added v0.8.3 (#18639) 2020-09-15 07:15:38 +02:00
Adam J. Stewart
c59836222e py-traitlets: added v5.0.4, moved url to PyPI (#18640) 2020-09-15 07:15:00 +02:00
Robert Pavel
4fc2370559 Added Missing Tag to Cradl Spackage (#18669)
Added missing proxy apps tag to cradl spackage
2020-09-14 18:55:53 -06:00
Robert Pavel
a2673aeddd CRADL Machine Learning Proxy Spackage (#18668)
* Initial CRADL Spackage Work

Currently resolving ```--single-version-externally-managed``` error

* Fixed GPUtil Issues

Thanks to Vinay Ramakrishnaiah for overwriting install

* Finished CRADL Install Function

Finished CRADL install function which is basically copying the scripts
to the install directory. Also resolved flake8 issues for PR purposes
2020-09-14 14:25:49 -06:00
Simon Frasch
49512e21ab SIRIUS: Update dependencies (#18622)
* sirius: Fixed dependency spfft when build with +rocm

* sirius: Added new dependency spla for develop build

* sirius: Added maintainer
2020-09-14 12:23:32 -05:00
darmac
5f47170492 Add new package: webbench (#18650)
* Add new package: webbench

* Update var/spack/repos/builtin/packages/webbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:57:40 -05:00
ketsubouchi
41b68741ec cpio: add --rtlib=compiler-rt for %fj (#18619)
* cpio: add --rtlib=compiler-rt for %fj

* cpio: simplify if

* Update var/spack/repos/builtin/packages/cpio/package.py

This seems better.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:55:47 -05:00
t-nojiri
a250006449 ngmlr: support for aarch64 (#18621)
* ngmlr: support for aarch64

* ngmlr: Fixed patch file
2020-09-13 23:14:59 -05:00
ketsubouchi
3cfce42563 nek5000: Support Fujitsu fortran (#18659) 2020-09-13 23:14:04 -05:00
Paul
c29b74e7ad Updated FZF package for newer versions. (#18608)
* Support for external find.
* Added latest version (0.22.0) and conditions to package to continue
support for older versions.
2020-09-13 11:27:56 -05:00
Joseph Wang
58f101de88 use github for download (#18657) 2020-09-13 10:23:46 -05:00
Andrew W Elble
a734dabf2b new package: py-reproject (#18641)
* new package: py-reproject
add setuptools build/run dep to py-astropy-healpix

* fixes

* fix
2020-09-12 15:37:34 -05:00
darmac
85f7a8bf71 Add new package: delta (#18648) 2020-09-12 15:37:14 -05:00
darmac
10dab474ce cvs: add a patch for segv issue (#18649) 2020-09-12 09:47:39 -05:00
darmac
e355fc16ad Add new package: dbxtool (#18651) 2020-09-12 09:45:05 -05:00
darmac
3211ac5136 Add new package: geoip-api-c (#18653) 2020-09-12 09:44:28 -05:00
darmac
cde4654525 Add new package: libspiro (#18654) 2020-09-12 09:44:02 -05:00
darmac
6d39e6ebea Add new package: hping (#18311)
* Add new package: hping

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix flake8 errors

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12 09:36:30 -05:00
darmac
128731ec74 Add new package: jetty-project (#18555)
* Add new package: jetty-project

* refine dependency

* refine maven version
2020-09-12 09:35:38 -05:00
Robert Blake
afb0883762 ncurses: adding external support. (#18609)
* ncurses: adding external support.

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixing includes.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-11 16:00:11 -05:00
Adam J. Stewart
e7040467f2 NumPy: added v1.19.2 (#18615) 2020-09-11 15:38:24 +02:00
srekolam
1aceb38b89 Changes for hipsparse, rocthrust recipes for rocm_3.7.0 (#18497)
* changes for hipsparse,rocthrust recipes for rocm_3.7.0

* changes to rocrand for 3.7.0

* version changes
2020-09-10 17:33:21 -05:00
srekolam
4a474d9d67 recipes changes for hipblas, rocprim, rocfft, rocsolver for rocm3.7.0 (#18495)
* recipes changes for rocprim,rocfft,rocsolver for rocm3.7.0

* changes to hipcub recipe for rocm-3.7.0

* changes to address review comments
2020-09-10 17:32:41 -05:00
Robert Pavel
29645ceba5 Adding Missing Versions for Flux-Sched/Flux-Core and Compiler Flags (#18612)
* Checksummed New Flux Versions

Checksummed new flux versions to let spack detect them

* Added CXXFlags to build Flux-sched

Added missing cxxflags to build flux-sched
2020-09-10 16:53:28 -05:00
Robert Pavel
3fabdb6e9b Adding Cuda Variant to SW4Lite (#18590)
* Adding Cuda Variant to SW4Lite

Added cuda variant of sw4lite  as per guidance in README

* Updated SW4Lite+cuda to Current Header Conventions

Updated sw4lite+cuda to use current conventions for spackage include
dirs

* Fixing FLake8 Issue with Sw4lite+cuda Fix

Fixed overly long line and further underlined sticky note reminding me
to run flake8 BEFORE pushing

* Switching to Spack Compiler Wrapper

Switching to spack compiler wrapper for consistency
2020-09-10 16:53:13 -05:00
Tim Haines
ff6ca57dda Dyninst: add v10.2.1 (#18611) 2020-09-10 16:09:06 -05:00