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cc6f822cb1
Commit Graph

8024 Commits

Author SHA1 Message Date
Justin S
cc6f822cb1 smof: new package at 2.13.1 (#11502) 2019-05-17 14:44:35 -05:00
Justin S
c7a28ec1d4 r-bglr: new package at 1.0.8 (#11489) 2019-05-17 14:35:38 -05:00
Justin S
719cd6741d r-rrblup: new package at 4.6 (#11488) 2019-05-17 14:34:33 -05:00
Justin S
8c5b41793c r-qtl: new package at 1.44-9 (#11487) 2019-05-17 14:33:42 -05:00
Justin S
c00ed0d942 py-metasv: new package at 0.5.4 (#11476) 2019-05-17 14:33:04 -05:00
Justin S
7a459857e7 py-pybedtools: new package at 0.6.9 (#11475) 
* py-pybedtools: new package at 0.6.9

* py-pybedtools: add bedtools2 dep
 2019-05-17 14:32:21 -05:00
Justin S
79a0da6098 repeatmodeler: new package at 1.0.11 (#11472) 2019-05-17 14:31:26 -05:00
Sriram Swaminarayan
0557d93080 added branch multisplice to the parsplice package (#11504) 2019-05-17 12:08:40 -06:00
Christoph Junghans
b7f2923607
gasnet: 2019.3.0 (#11503) 2019-05-17 12:02:43 -06:00
Christoph Junghans
2af7688c55
parsplice: needs LAMMPS_EXCEPTIONS (#11500) 2019-05-17 08:57:35 -06:00
Piotr Luszczek
900f8f0806 Add version 2.5.1-alpha1 of MAGMA (#11486) 2019-05-17 08:19:32 -05:00
Todd Gamblin
23c48d94d3
cmake: default to +ownlibs to improve build times (#11483) 
- CMake is built *very* frequently, and the number of dependencies it has
  accumulated can take a very long time on some systems.

- Use +ownlibs by default to avoid the build overhead. This won't
  interfere with other packages by introducing conflicting libraries, as
  CMake is nearly always a build dependency.
 2019-05-17 08:47:58 +02:00
Jim Galarowicz
c7f23dcd8d OpenSpeedShop/CBTF package updates and fixes (#11470) 
This avoids using Boost 1.70.0, fixes library access in OpenSpeedShop
packages, adds new versions, and updates QT dependency constraints
in CBTF and OpenSpeedShop packages

- Constrain Boost dependency to 1.69.0 or earlier to avoid issues
  with 1.70.0 for Open|SpeedShop and CBTF packages
- Update DYNINSTAPI_RT_LIB environment variable to use single library
  from "find_libraries" (which returns a list) in OpenSpeedShop
  packages
  Fixes #11443
- Add version 1.9.3 for CBTF Argo Navis, CBTF Krell, CBTF LANL, and
  CBTF packages
- Add version 2.4.1 for OpenSpeedShop Utils and OpenSpeedShop
  packages
- Update QT dependency to 5.10.0 or greater for QtGraph and CBTF Argo
  Navis packages
 2019-05-16 18:19:55 -07:00
Michael Kuhn
e90b4ce6fb CDO package: Fix build with gcc@9 (#11464) 
This makes several changes to make CDO work with gcc@9:

- Add version 1.9.7rc2
- Add a patch to make version 1.9.7rc2 build with gcc@9:
- Add a conflict with GCC 9 for earlier versions of CDO

It also adds a pkgconfig build dependency as configure checks for it.
 2019-05-16 17:53:38 -07:00
Andrew Gaspar
8675f44d45 Kokkos package: add debug variant (#11469) 2019-05-16 17:35:23 -07:00
Chris Green
f90507a227 numpy: new version 1.16.3; update historical versions. (#11364) 2019-05-16 11:44:43 -05:00
Chuck Atkins
c2d6095cf3
paraview: fix several dependency issues (#11432) 
* Use externally provided mpi4py
* Make mpi4py and numpy both build deps instead of only run deps
* libxt is only on ~osmesa platform=linux
 2019-05-16 09:04:44 -04:00
David Beckingsale
5ccc695bfb Fix CMake versions dependencies in RAJA package (#11440) 2019-05-16 13:54:52 +02:00
Thomas Gruber
0337170d34 Likwid: added versions 4.3.3 and 4.3.4 (#11479) 2019-05-16 13:35:25 +02:00
Denis Davydov
38a59e6e37 symengine: add 0.4.0, fix dependency in dealii (#11473) 2019-05-16 12:23:21 +02:00
ktsai7
f68f5e3014 Update flecsi package.py (#11442) 
* Update flecsi package.py

* Update package.py

* Update package.py

* Update package.py
 2019-05-15 15:29:08 -06:00
Justin S
bfb0f57492 r-geonames: new package at 0.999 (#11455) 2019-05-15 16:04:50 -05:00
Justin S
11bd795ca8 repeatscout: new package at 1.0.5 (#11409) 
* repeatscout: new package at 1.0.5

* repeatscout: add trf runtime dependency

* repeatscout: add nseg runtime dependency
 2019-05-15 16:04:17 -05:00
Justin S
19355cafae r-phylostratr: new package (#11053) 2019-05-15 16:03:36 -05:00
Justin S
5f5616d6a2 r-taxizedb: new package at 0.1.4 (#11052) 2019-05-15 16:02:54 -05:00
Justin S
b19429159f r-rmysql: add 0.10.17, mariadb-connector-c dependency (#11044) 
* r-rmysql: add 0.10.17, mariadb-connector-c dependency

* r-rmysql: add dbi, mariadb version constraints
 2019-05-15 15:58:15 -05:00
Justin S
62fa813678 recon: new package at 1.08 (#11408) 
* recon: new package at 1.08

* recon: add period

* recon: use proper decorators, better documentation

* recon: fix incorrect os import

* recon: add repeatmasker patch as variant
 2019-05-15 15:55:10 -05:00
Justin S
80d7573df8 r-rnoaa: new package at 0.8.4 (#11461) 2019-05-15 15:52:17 -05:00
Justin S
a99454ec6d r-isdparser: new package at 0.3.0 (#11460) 2019-05-15 15:51:50 -05:00
Justin S
cdd8da7251 r-crul: new package at 0.7.4 (#11459) 2019-05-15 15:51:11 -05:00
Justin S
cfad3cd06c r-httpcode: new package at 0.2.0 (#11454) 2019-05-15 15:50:32 -05:00
Justin S
f3dd933e3f r-urltools: new package at 1.7.3 (#11458) 2019-05-15 15:48:54 -05:00
Justin S
c49017a4c5 r-triebeard: new package at 0.3.0 (#11457) 2019-05-15 15:48:17 -05:00
Justin S
230db7c880 r-curl: add 3.3 (#11456) 2019-05-15 15:47:45 -05:00
Denis Davydov
9d34326992 fix suite-sparse built with tbb from intel-parallel-studio (#11134) 
* fix suite-sparse built with tbb from intel-parallel-studio

* intel: add tbb_headers, strip newline from cxx_lib

* use property
 2019-05-15 11:03:19 -07:00
Justin S
5c021f5416 New package: NSEG (starting at version 1.0) (#11410) 
The source is managed as a set of files in an FTP URL. Since there
are no FetchStrategy's implemented for this setup, the files are
managed as a set of Resource's
 2019-05-15 10:35:38 -07:00
Leonhard Reichenbach
eae9b0908a CMake package: add dependencies (#11257) 
Add dependencies to CMake and GnuTLS which would otherwise be
picked up from the system

* Add gnutls as explicit dependency of CMake
* Add new package libidn2 as explicit dependency for gnutls
 2019-05-15 10:07:31 -07:00
Christoph Junghans
0226a95232
parsplice: fix build (#11462) 2019-05-15 08:18:35 -06:00
Brian Van Essen
821b7d3b93 Added setuptools to receipe (#11463) 2019-05-15 12:19:04 +02:00
Michael Kuhn
58c5442d62 kitty: Fix pkgconfig dependency (#11465) 
pkgconfig is the correct virtual dependency while pkg-config is a
specific implementation.
 2019-05-15 12:18:16 +02:00
Sinan
54d56db1f1 New package: py-pyrosar (#11428) 2019-05-15 10:53:30 +09:00
Sinan
733c2a2554 New package: py-spatialist (#11427) 2019-05-15 10:52:31 +09:00
Sinan
63af41c0c6 New package: py-tblib (#11425) 2019-05-15 10:51:37 +09:00
Sinan
e2ce4386e2 New package: py-scoop (#11423) 2019-05-15 10:50:41 +09:00
Sinan
249845e80b New package: py-progressbar2 (#11421) 2019-05-15 10:49:28 +09:00
Sinan
544cf085b4 New package: py-python-utils (#11422) 2019-05-15 10:47:28 +09:00
Christoph Junghans
6083de3baa
nut: add v0.1.1 (#11444) 2019-05-14 16:36:31 -06:00
Justin S
723eea00f3 r-construct: new package at 1.0.3 (#11452) 2019-05-14 16:24:01 -05:00
Justin S
1ceeac8603 r-rstan: add 2.18.2 (#11447) 2019-05-14 16:23:14 -05:00
Justin S
fc890c80fb r-loo: new package at 2.1.0 (#11448) 2019-05-14 16:22:29 -05:00