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8483 Commits

Author SHA1 Message Date
Justin S
94af6cad5f interproscan: new package at 5.36-75.0 (#12130) 2019-07-25 19:49:42 -05:00
Matthias Diener
7cc1292202 git-lfs: add version 2.8.0 (#12131) 2019-07-25 19:46:03 -05:00
Glenn Johnson
7ad8061cbb Patches for graphviz (#12133) 
- patch to build with qt5, enabling gvedit to build
- two patches to compile graphviz with icc
 2019-07-25 19:45:10 -05:00
Satish Balay
7bd3b66f6e xsdk: phist has a conflict with gcc version <= gcc-4.9.1 (#11946) 
* xsdk: phist has a conflict with gcc version <= gcc-4.9.1 - so add a variant to disable it on older compiler builds

This is triggered by #11677

* fix typo
 2019-07-25 14:01:00 -05:00
Chuck Atkins
e614d4b481 cmake: Add a patch to revert a findmpi regression (#12129) 2019-07-25 10:23:01 -07:00
Chris Green
c20c153d16 catch: more versions, new and older. (#12123) 
New versions 2.9.0, 2.9.1, older versions 2.2.2, 2.2.3, 2.4.1, 2.4.2, 2.7.0, 2.7.1, 2.7.2.
 2019-07-25 11:33:03 -05:00
simo-tuomisto
4c7ee8b7c8 lame & libmad: Added two new packages for sox mp3 support. (#11964) 
* Added a new package for LAME and a variant in sox for it.

* Fixed download url for LAME

* libmad: Added new package libmad for mp3 decoding. Changed sox variant from lame to mp3.

* libmad: Added m4 as a requirement

* libmad: Added comment on patch origins

* libmad: Added a list_url for alternate download location

* libmad: Fixing libmad download url
 2019-07-25 10:40:50 -05:00
Sinan
9ace419aa5 gdal: added versions 2.4.2 and 3.0.1 (#12125) 2019-07-25 17:14:37 +02:00
Chris Green
4190f302e5 geant4: improvements with respect to building against CLHEP. (#12124) 2019-07-25 08:58:13 -05:00
Todd Gamblin
b0abbfecb8 new command: spack maintainers queries package maintainers 
- We don't currently make enough use of the maintainers field on
  packages, though we could use it to assign reviews.

- add a command that allows maintainers to be queried
  - can ask who is maintaining a package or packages
  - can ask what packages users are maintaining
  - can list all maintained or unmaintained packages

- add tests for the command
 2019-07-24 14:10:08 -07:00
Glenn Johnson
8bb745325d Add py-setuptools as a build dependency for py-absl-py (#12109) 
I needed to add py-setuptools to get py-absl-py to build.
 2019-07-24 12:33:45 -05:00
Glenn Johnson
642d3345f6 Add conflicts statement to freetype for icc (#12111) 
Freetype-2.8 and above use __builtin_shuffle which is not supported by
icc.
 2019-07-24 12:33:24 -05:00
t-karatsu
0f98cf0398 Perl take in flags (#12112) 
* perl: perl package takes in spack cflags.

* fix for flake8 test.
 2019-07-24 12:32:49 -05:00
Toyohisa Kameyama
bbc689ae38 nnvm: cmake bug is fixed. (#12113) 2019-07-24 12:31:49 -05:00
Toyohisa Kameyama
cb62b1ff85 rapidjson: Don't add -march=native on ARM and gcc 5.x or before. (#12117) 2019-07-24 12:30:32 -05:00
Nichols A. Romero
63813fa9c0 QMCPACK Update July 2019 (#12097) 
* Add QMCPACK v. 3.8.0

* Remove QE variant conflict for serial QMCPACK installations.

* Add support for QE 6.4.1 converter.

* FindLibxml2QMC patch function only needed prior to QMCPACK 3.8.0
 2019-07-24 12:28:35 -05:00
Glenn Johnson
42c3782f7e Do not build c-blosc test if intel in spec (#12110) 
While the c-blosc library compiles with icc some of the c-blosc tests do
not. Disable the tests so that the spack build can continue.
 2019-07-24 11:17:11 -05:00
t-karatsu
0d690edfb2 cmake: fix cxx98flag's name (#12114) 2019-07-24 11:28:22 -04:00
Toyohisa Kameyama
a8b12f0cb6 rocksdb: Don't add -march=native on ARM and gcc 5.x or before. (#12108) 2019-07-23 22:33:05 -05:00
Douglas Duckworth
ec29461632 added relion 3.0.7 - removed deprecated versions (#12101) 
* relion - added v 3.0.7 and removed deprecated versions that have inferior performance

* relion 3.0.7 does require cuda 9 or above
 2019-07-23 18:13:00 -05:00
Toyohisa Kameyama
6b07407cd0 isaac-server: Don't add -march=native on ARM and gcc 5.x or before. (#12042) 2019-07-23 16:48:25 -05:00
Toyohisa Kameyama
39139b9db8 nanoflann: Don't add -mtune=native on ARM and gcc 5.x (#12093) 2019-07-23 16:47:28 -05:00
Nichols A. Romero
2b35ad7b22 Quantum Espresso Update 2019 (#12098) 
* Add support for QE 6.4.1

* QE 6.3. backports branch no longer relevant.

* List QE develop first.
 2019-07-23 16:44:08 -05:00
Jimmie Lin
8095e26ffa Add EFA fabric to libfabric 2019-07-23 12:08:33 -07:00
Pariksheet Nanda
5878b418c5 ioapi: add version 3.2 (#12088) 
* ioapi: add version 3.2

* ioapi: unwrap version checksum; it's exempt from line length QA

* ioapi: drop overridden build(); it's the same as the default
 2019-07-23 12:10:01 -05:00
Greg Becker
4ff2773704 ncurses: remove TERMINFO from build env (#12086) 2019-07-23 10:13:41 -05:00
Marco Comparato
7ea4e50587 font-util: add missing autoconf automake dependencies (#12053) 2019-07-23 09:41:04 -05:00
Daniel Topa
07f3921838 Add UCX 1.6.0 (#12089) 
https://github.com/openucx/ucx/releases/tag/v1.6.0
Released 2019-07-17

Verification builds on LANL Darwin x86_64 and Power9:

dantopa@cn2037:pr-update-ucx.spack $ date
Mon Jul 22 17:04:14 MDT 2019

dantopa@cn2037:pr-update-ucx.spack $ pwd
/scratch/users/dantopa/repos/spack/pr-update-ucx.spack

dantopa@cn2037:pr-update-ucx.spack $ spack find -ldf ucx

==> 2 installed packages
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
w7fp4n6    ucx@1.6.0%gcc
tt2hkol        ^numactl@2.0.12%gcc
srhy7ry        ^rdma-core@20%gcc
kvgvhpv            ^libnl@3.3.0%gcc

-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
cji3ce7    ucx@1.6.0%gcc
pmgndwh        ^numactl@2.0.12%gcc
qymrwx6        ^rdma-core@20%gcc
2263pm5            ^libnl@3.3.0%gcc

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
 2019-07-22 21:43:35 -05:00
Matthias Diener
19968a0035 scons: add version 3.1.0 (#12084) 2019-07-22 17:35:40 -05:00
Chuck Atkins
69c302f455 cmake: Move cxx11 flags for fujitsu into the flag_handler method (#12056) 
* cmake: Move cxx11 flags for fujitsu into the flag_handler method

* cmake: sanitization and error checking in flag_handler

* cmake: Fix fujitsu flag check from 'fc' to 'fj'
 2019-07-22 17:33:40 -05:00
Denis Davydov
8cef81363c gcc: support without command line tools (#11040) 2019-07-22 16:53:50 -05:00
zschulte
db7127c56d openjdk (#10446) 
* openjdk

* Removing preferred from latest and adding a few lines for readability.

* Remove bad whitesapce

* removing formatting changes

* stable url for openjdk 1.8

* remove extra blank line

* actual binary
 2019-07-22 13:11:45 -05:00
Toyohisa Kameyama
58c84423b1 tealeaf: Don't add -march=native on ARM and gcc 5.x or before. (#12080) 2019-07-22 13:03:43 -05:00
Hironori-Yamaji
8e92409263 jdk: Add JDK 12.0.2_10 (#12081) 2019-07-22 12:40:11 -05:00
Mark W. Krentel
6111758b48 hpctoolkit: add version gpu and variant cuda (#12068) 
Add version for 'gpu' and variant for 'cuda'.  These are currently available from the 'master-gpu' branch.

* hpctoolkit: add version gpu and variant cuda
* The gcc >= 4.8.x requirement only applies for dyninst >= 10.x.
 2019-07-21 22:29:08 -07:00
Toyohisa Kameyama
8ca90e26d9 libsharp: Don't add -march=native on ARM (#12064) 
* libsharp: Don't add -march=native on ARM

* Add preferred=True to version 1.0.0.
 2019-07-21 21:56:14 -05:00
Mark W. Krentel
930011c124 hpcviewer: add version 2019.07 (#12067) 
ibm-java: fix the URL to only use a machine type that ibm-java
supports so that 'spack info' doesn't report a non-existent URL on
platforms that it doesn't support.
 2019-07-20 10:07:15 -07:00
Greg Becker
4f9131fdc2 Package inheritance: Find patch files defined in parent classes using MRO (#12051) 
Fixes #8908, 11844

Use Python MRO to find patch files from parent classes.
 2019-07-19 18:08:05 -07:00
Peter Scheibel
4b6de78062 font-util package: add autoconf/automake build deps (#12071) 
Fixes #12026

These are required on some systems
 2019-07-19 17:45:22 -07:00
Michael Kuhn
cadff917c7 leveldb: add 1.22 (#12044) 2019-07-19 09:26:09 -05:00
Chris Green
9b763980b6 libxpm: cope with system gettext if configured. (#10881) 
* If gettext is installed in the system it won't be in the spec tree.
 2019-07-19 08:36:58 -05:00
Gregory Becker
cebf1fd668 stacks: update view management for multiple/combinatorial views 
This adds notion of a default view, other views in environments
 2019-07-18 19:28:50 -07:00
Matthias Diener
5be1ff83d1 cmake: add version 3.15.0 (#12058) 2019-07-18 18:28:21 -05:00
Adam J. Stewart
032075af74 Add master version to sklearn (#12057) 2019-07-18 15:56:48 -05:00
Matthieu Dorier
6eba9febaa pkg PRRTE: added version 1.0.0 (#12054) 2019-07-18 13:59:39 -05:00
Matthieu Dorier
3120e06359 added version 3.1.3 of PMIx (#12055) 2019-07-18 13:59:02 -05:00
Adam J. Stewart
c96d687c7c Workaround for #9149 (#12050) 2019-07-18 13:57:37 -05:00
Justin S
620d728aa5 py-mlxtend: new package at 0.16.0 (#12039) 
* py-mlxtend: new package at 0.16.0

* py-mlxtend: fix dependencies
 2019-07-18 12:25:41 -05:00
Phil Carns
7428fc66f7 update web site and git url for BMI package (#12036) 2019-07-17 21:28:39 -05:00
Jordan Ogas
ada50b968a add charliecloud v0.10 (#12046) 2019-07-17 21:28:02 -05:00