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Author SHA1 Message Date
Juan Miguel Carceller
9d6bf373be whizard: Add version 3.1.4 (#43045) 
* whizard: Add a patch to fix builds with pythia8 >= 8.310

* Add whizard 3.1.4 and update accordingly

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-05-12 10:44:56 -07:00
Alex Richert
cff35c4987 octave: use pcre2 for @8: (#42636) 
* octave: use pcre2 for @8:

* Add 'pcre2' variant to octave to control pcre vs. pcre2

* Update var/spack/repos/builtin/packages/octave/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

---------

Co-authored-by: Alex Richert <alexander.richert@noaa.gov>
Co-authored-by: Alec Scott <hi@alecbcs.com>
 2024-05-12 10:44:31 -07:00
Juan Miguel Carceller
d594f84b8f fastjet: Add a cxxstd variant (#44072) 
* fastjet: Add a cxxstd variant

* Use f-strings

* Add multi=False

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-05-12 10:42:56 -07:00
Wouter Deconinck
f8f01c336c clang: support cxx20_flag and cxx23_flag (#43438) 
* clang: support cxx20_flag and cxx23_flag

* clang: coverage test cxx{}_flag and c{}_flag additions
 2024-05-12 07:45:59 -07:00
Todd Gamblin
12e3665df3 Bump version on develop to v0.23dev0 (#44137) develop-2024-05-12 2024-05-11 18:01:50 +02:00
Todd Gamblin
fa4778b9fc changelog: add changes form 0.21.1 and 0.21.2 (#44136) 
These changes were added to the release branch but did not make it onto `develop`.
 2024-05-11 17:45:14 +02:00
Harmen Stoppels
66d297d420 oci: improve default_retry (#44132) 
Apparently urllib can throw a range of different exceptions:

1. HTTPError
2. URLError with e.reason set to the actual exception
3. TimeoutError from getresponse, which is not wrapped
 2024-05-11 15:43:32 +02:00
James Taliaferro
56251c11f3 qpdf: new package (#44066) 
* New package: qpdf

* Update var/spack/repos/builtin/packages/qpdf/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

* Fix format of cmake_args

---------

Co-authored-by: Alec Scott <hi@alecbcs.com>
 2024-05-10 14:32:57 -06:00
James Smillie
40bf9a179b New package: py-nuitka (#44079) 2024-05-10 12:07:02 -07:00
John W. Parent
095aba0b9f Buildcache/ensure symlinks proper prefix (#43851) 
* archive: relative links only

Ensure all links written into tarfiles generated from Spack prefixes do not contain symlinks pointing outside the prefix

* binary_distribution: limit extraction to prefix

Ensure files extracted from spackballs are not links pointing outside of the prefix

* Ensure rpaths are properly set on Windows

* hard error on extraction of absolute links

* refactor for non link-modifying approach

* Restore tarball extraction to original impl

* use custom readlink

* cleanup symlink module

* make lstrip
 2024-05-10 13:00:40 -05:00
John W. Parent
4270136598 Windows: Non config changes to support Gitlab CI (#43965) 
* Quote python for shlex

* Remove python path quoting patch

* spack env: Allow `C` "protocol" for config_path

When running spack on windows, a path beginning with `C://...` is a valid path.

* Remove makefile from ci rebuild

* GPG use llnl.util.filesystem.getuid

* Cleanup process_command

* Remove unused lines

* Fix tyop in encode_path

* Double quote arguments

* Cleanup process_command

* Pass cdash args with =

* Escape parens in CMD script

* escape parens doesn't only apply to paths

* Install deps

* sfn prefix

* use sfn with libxml2

* Add hash to dep install

* WIP

* REview

* Changes missed in prior review commit

* Style

* Ensure we handle Windows paths with config scopes

* clarify docstring

* No more MAKE_COMMAND

* syntax cleanup

* Actually correct is_path_url

* Correct call

* raise on other errors

* url2path behaves differently on unix

* Ensure proper quoting

* actually prepend slash in slash_hash

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
 2024-05-10 13:00:13 -05:00
Juan Miguel Carceller
f73d7d2dce dd4hep: cleanup recipe, remove deprecated versions and patches (#44110) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-05-10 07:40:38 -07:00
Juan Miguel Carceller
567566da08 edm4hep: cleanup recipe, remove deprecated versions and patches (#44113) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-05-10 07:39:06 -07:00
Chris Marsh
30a9ab749d libtheora: Remove unneeded autoreconf section (#44063) 
* Remove autoreconf section that was causing issues with libtool mismatch. Fixes issue #43498
 2024-05-10 10:27:20 -04:00
Mikael Simberg
8160a96b27 dla-future: Add 0.4.1 (#44115) 
* dla-future: Add 0.4.1

* Use ninja as generator in dla-future
 2024-05-10 15:21:47 +02:00
Mikael Simberg
10414d3e6c pika: Add 0.25.0 (#44114) 2024-05-10 14:37:31 +02:00
Stephen Sachs
1d96c09094 libhugetlbfs: Fix the build with an update to 2.24 (#44059) 
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
 2024-05-10 10:50:36 +02:00
Harmen Stoppels
e7112fbc6a PythonExtension: fix issue where package does not extend python (#44109) 2024-05-10 10:47:37 +02:00
Tom Scogland
b79761b7eb flux-sched: set the version if the ver file is missing (#44068) 
* flux-sched: set the version if the ver file is missing

problem: flux-sched needs a version, it normally gets this from a
release tarball or from git tags, but if using a source archive or a git
clone without tags the version is missing

solution: set the version through cmake based on the version spack sees
when the version file is missing

* Update var/spack/repos/builtin/packages/flux-sched/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

---------

Co-authored-by: Alec Scott <hi@alecbcs.com>
 2024-05-09 11:50:42 -07:00
Christopher Christofi
3381899c69 miniforge3: add new versions with mamba installation (#43995) 
* miniforge3: add new version with mamba installation
* fix styling
* update maintainers
* Fix variant directive ordering
 2024-05-09 12:48:40 -06:00
Massimiliano Culpo
c7cf5eabc1 Fix filtering external specs (#44093) 
When an include filter on externals is present, implicitly
include libcs.

Also, do not penalize deprecated versions if they come
from externals.
 2024-05-09 18:50:15 +02:00
Juan Miguel Carceller
d88fa5cf8e pythia8: add a cxxstd variant (#44077) 
* pythia8: add a cxxstd variant
* Add multi=False, fix regexp

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2024-05-09 09:32:38 -07:00
Richard Berger
2ed0e3d737 kokkos-nvcc-wrapper: add missing versions (#44089) 2024-05-09 09:23:16 -07:00
Julien Cortial
506a40cac1 mmg: Build & install shared libraries, add 5.7.2 & 5.7.3(#43749) 2024-05-09 16:59:53 +02:00
Rémi Lacroix
447739fcef Universal Ctags: Add version 6.1.20240505.0 (#44058) 2024-05-09 15:55:41 +02:00
Massimiliano Culpo
e60f6f4a6e CI/Update macOS runners: macos-latest switched to macos-14 (#44094) 
macos-latest switched to macos-14, so now we are running
two identical jobs.
 2024-05-09 14:28:17 +02:00
Vanessasaurus
7df35d0da0 package: libsodium update URL to GitHub (#44090) 
Problem: the libsodium download endpoints are not reliable,
they fail multiple times a day for several of our automated
pipelines.
Solution: use the GitHub releases and branches.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
 2024-05-09 14:26:02 +02:00
Luc Berger
71b035ece1 Kokkos: adding new release 4.3.01 (#44086) 2024-05-09 03:33:35 -06:00
Ashwin Kumar Karnad
86a134235e Octopus 14.1 : Add new version hash (#44083) 
* octopus: add hash for new version
* octopus: add --enable-silent-deprecation flag when @14.1:
 2024-05-09 03:18:22 -06:00
Jon Rood
24cd0da7fb amr-wind: add missing variants (#44078) 
* amr-wind: add missing variants

* Fix copy and paste.

* waves2amr is only available on amr-wind@2.0

* Style.

* Use satisfies.
 2024-05-09 02:38:16 -06:00
alvaro-sch
762833a663 Orca (standalone) 5.0.4 (#44011) 
* orca: added latest version 5.0.4
* Fixed openmpi versions
 2024-05-08 15:36:27 -07:00
Ken Raffenetti
636d479e5f mpich: Add license (#43821) 2024-05-08 12:07:46 -07:00
Sreenivasa Murthy Kolam
f2184f26fa hipsparselt: new package (#44080) 
* Initial commit for adding hipsparselt recipe
* correct the style errors
* remove master version
 2024-05-08 12:03:21 -07:00
Harmen Stoppels
e1686eef7c gcc: use -idirafter for libc headers (#44081) 
GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc
headers. We're using `-isystem` for libc, which puts those headers too
early in the search path. `-idirafter` fixes this so `include_next`
works.
 2024-05-08 20:45:04 +02:00
Adam J. Stewart
314893982e JAX: add v0.4.27, NCCL variant (#44071) 2024-05-08 11:36:24 -07:00
Jake Koester
9ab6c30a3d add flag to turn off building tests and examples (#44075) 2024-05-08 11:33:49 -07:00
Adam J. Stewart
ddf94291d4 py-jsonargparse: add v4.28.0 (#44074) 2024-05-08 11:31:07 -07:00
Jon Rood
5d1038c512 hypre: add cublas and rocblas variants (#44038) 
* Add cublas and roblas variants to hypre.

* Fix mistakes.

* Remove newline.

* Address suggestions.
 2024-05-08 12:04:11 -06:00
renjithravindrankannath
2e40c88d50 Bump up the version for ROCm-6.1.0 (#43843) 
* Bump up the version for ROCm-6.1.0
* Style check error correction and patch files
* Update for rocm-openmp-extras 6.1
* updating rocm-openmp-extras and math libraries with 6.1
* Style check error correcion
* updating hipcub, hipfort & miopen-hip for 6.1
* Rocm-openmp-extras and some mathlib updates
* iAudit error correction and rocmlir update
* Updating dependency on suite-sparse and adding path
* Style check error corection
* hip-tensor 6.1.0 update
* rdc 6.1 needs grpc 1.59.1
* rvs 6.1 updates and patch
 2024-05-08 10:26:30 -07:00
dependabot[bot]
2bcba57757 build(deps): bump actions/checkout from 4.1.4 to 4.1.5 (#44045) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.4 to 4.1.5.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](0ad4b8fada...44c2b7a8a4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2024-05-08 09:22:48 -07:00
shanedsnyder
37330e5e2b darshan-runtime,darshan-util,py-darshan: add darshan-3.4.5 packages (#43989) 
* add darshan-3.4.5 packages, update URLs
* py-setuptools version switches for py-darshan
* more py-darshan test dependencies
* try a conditional importlib_resources dependency
 2024-05-08 09:06:24 -07:00
snehring
b4411cf2db iq-tree: add new version delete duplicate package (#44043) 
* iq-tree: add new version delete duplicate package
* Replace iqtree2 dependency
   orthofinder: replace iqtree2 with iq-tree@2
   py-phylophlan: replace iqtree2 with iq-tree@2
 2024-05-08 09:02:06 -07:00
Harmen Stoppels
65d1ae083c gitlab ci: tutorial: add julia and vim (#44073) 2024-05-08 14:18:12 +02:00
andriish
0b8faa3918 cernlib: add 2023.08.14.0-free (#40211) 
* Update CERNLIB

Update CERNLIB

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of andriish

* cernlib: merge crypto->crypt patches

* cernlib: depends_on xbae when `@2023:`

* cernlib: patch for Xbae and Xm link order (DSO)

* [@spackbot] updating style on behalf of andriish

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-05-08 06:58:07 -05:00
Alec Scott
f077c7e33b unmaintained pkg bump: 2024-05-05 (#44021) 
* unmaintained pkgs: bump versions

* Changes following review feedback

* glm: update cmake dependency

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
 2024-05-08 05:53:49 -06:00
Massimiliano Culpo
9d7410d22e gcc: add v14.1.0 (#44053) 2024-05-08 12:14:44 +02:00
Tamara Dahlgren
e295730d0e mold: Replace maintainer (#44047) 
* Remove maintainer at his request

* Add msimberg as the maintainer
 2024-05-08 09:29:43 +02:00
Todd Gamblin
868327ee14 r: patch R-CVE-2024-27322 for r@3.5:4.3.3 (#44050) 
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
 2024-05-08 08:56:37 +02:00
Massimiliano Culpo
f5430b16bc Bump removal version in deprecation messages (#44064) 2024-05-08 08:49:14 +02:00
Tamara Dahlgren
2446695113 Remove dead environment creation code (#44065) 2024-05-07 22:49:06 -06:00