Commit Graph

20865 Commits

Author SHA1 Message Date
Hector Martinez-Seara
cfdfdf77e0
gromacs: Added version 2021.6 (#31692) 2022-07-22 15:18:59 +02:00
Erik Schnetter
2b0b573827
mpitrampoline: New version 4.2.0 (#31683) 2022-07-22 09:22:24 +02:00
Nicholas Sly
0e6b57e953
py-torch: use immutable URLs for open-ce patches (#31672)
* Update open-ce patches for py-torch to us immutable URLs.  Update magma dependency specs to be more explicit.

* Address comments for PR regarding URLs and conflicting variants.

Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>
2022-07-21 18:02:34 -06:00
Stephen Sachs
ee39fab226
[py-numpy] Newer versions do not build with icc (#31637)
* [py-numpy] Newer versions do not build with `icc`

Workaround until https://github.com/numpy/numpy/issues/22011 is solved.

* [py-numpy] Remove whitespaces
2022-07-21 12:33:41 -06:00
AMD Toolchain Support
5ffc095f63
Add version 3.2 of AMD libraries (#31538) 2022-07-21 13:32:28 +02:00
Adam J. Stewart
f85c4ec288
py-torch: ~caffe2 by default (#31656) 2022-07-21 09:43:02 +02:00
Adam J. Stewart
1af76946a4
py-torchvision: fix __version__ for stable releases (#31657) 2022-07-21 09:36:11 +02:00
Adam J. Stewart
609bc89fd9
py-gpytorch: add v1.8.0 (#31649) 2022-07-21 09:35:22 +02:00
Adam J. Stewart
de5a12c366
py-nbmake: add v1.3.3 (#31651) 2022-07-21 09:34:59 +02:00
Richard Berger
7d9c517c88
flecsi: correct version 2.x depends_on (#31658)
Propagate +shared to legion
2022-07-21 09:34:36 +02:00
Hadrien G
aa68f23177
root does not actually install libraries in /lib but in /lib/root (#31624) 2022-07-21 01:33:52 -06:00
Johannes Blaschke
15d50d81db
ncdu: add v1.16 and v1.17 (#31659) 2022-07-21 09:24:25 +02:00
shanedsnyder
56f5492fc0
darshan: add v3.4.0 to runtime/util packages (#31666) 2022-07-21 09:16:41 +02:00
snehring
d8983497f7
giflib: restrict patch to darwin (#31670) 2022-07-21 08:52:50 +02:00
Harmen Stoppels
bf8c2b05b3
py-wheel: 0.37.1 (#31619) 2022-07-20 09:05:39 -06:00
haralmha
cf3774aa46
xgboost: Add version 1.6.1 and make openmp variant compatible with clang (#31557) 2022-07-20 07:45:01 -07:00
Harmen Stoppels
43673fee80
py-pip: 22.x (#31621) 2022-07-18 19:13:42 -06:00
Servesh Muralidharan
918637b943
Update py-xdot to use python_purelib #31616 (#31628)
Issue discussed in https://github.com/spack/spack/issues/31616
2022-07-18 12:56:19 -07:00
Cory Bloor
5c59e9746a
rocblas: tighten tensile dependencies (#31414)
* rocblas: make tensile dependencies conditional

* Remove rocm-smi from the rocblas dependency list

rocm-smi was added to the rocblas dependency list because Tensile was a
dependency of rocBLAS and rocm-smi was a dependency of Tensile. However,
that reasoning was not correct.

Tensile is composed of three components:

  1. A command-line tool for generating kernels, benchmarking them, and
     saving the parameters used for generating the best kernels
     (a.k.a. "Solutions") in YAML files.
  2. A build system component that reads YAML solution files, generates
     kernel source files, and invokes the compiler to compile then into
     code object files (*.co, *.hsco). An index of the kernels and their
     associated parameters is also generated and stored in either YAML
     or MessagePack format (TensileLibrary.yaml or TensileLibrary.dat).
  3. A runtime library that will load the TensileLibrary and code object
     files when asked to execute a GEMM and choose the ideal kernel for
     your specific input parameters.

rocBLAS developers use (1) during rocBLAS development. This is when
Tensile depends on rocm-smi. The GPU clock speed and temperature must be
controlled to ensure consistency when doing the solution benchmarking.
That control is provided by rocm-smi. When building rocBLAS, Tensile is
used for (2). However, there is no need for control of the GPU at that
point and rocm-smi is not a dependency. At runtime, the rocBLAS library
uses Tensile for (3), but there is again no dependency on rocm-smi.

tl;dr: rocm-smi is a dependency of the tensile benchmarking tool,
which is not a build dependency or runtime dependency of rocblas.
2022-07-18 12:21:40 -07:00
Luke Diorio-Toth
710ec58df0
kraken2: add v2.1.2 (#31613) 2022-07-18 02:45:48 -06:00
haralmha
c589f97cf0
lhapdf: add gettext libs explicitly (#31555)
Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2022-07-18 10:25:08 +02:00
Adam J. Stewart
ad4f551c22
py-pyarrow: aarch64 patch no longer applies/required (#31609) 2022-07-18 09:44:58 +02:00
Adam J. Stewart
37134aa331
py-kornia: add v0.6.6 (#31611) 2022-07-18 09:43:41 +02:00
Glenn Johnson
bb1632c99d
Fixes for kallisto package (#31617)
This PR contains several fixes for the kallisto package.

- create hdf5 variant as hdf5 is optional beginning with 0.46.2
- provide patch for 0.43 to link against libz
- provide patch for older versions to build again gcc-11 and up
- patch and code to use autoconf-2.70 and up
2022-07-18 09:37:21 +02:00
Luke Diorio-Toth
7b95e2f050
py-phydms, py-pypdf2, and py-pyvolve: new packages (#31540)
* py-panaroo: new package

* moving panaroo to branch

* py-phydms: new package

* added dependencies and new packages

* fixed py-pypdf2 dependencies
2022-07-16 17:24:29 -07:00
Luke Diorio-Toth
03c1962252
mizani, plotnine, and pystan: added more versions and variable dependencies (#31541)
* py-panaroo: new package

* moving panaroo to branch

* updated mizani, plotnine, and pystan versions and requirements

* made suggested fixes

* adding more requested fixes

* added new versions of statsmodels and httpstan
2022-07-16 17:23:29 -07:00
FJ-NaokiMatsumura
268ec998c0
py-horovod: add versions 0.22+, fix aarch64 build (#29310)
* py-torch: add version 0.23.0 and fix to built on aarch64

* Add newer versions, fix build issues

* Fix tests

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-07-16 01:41:42 -06:00
Adam J. Stewart
caee7341dd
Qhull: fix RPATH on macOS (#31586) 2022-07-15 16:14:19 -07:00
Adam J. Stewart
ac15ebec76
py-geocube: add v0.3.2 (#31588) 2022-07-15 16:03:11 -07:00
Lucas Frérot
914ce8508a
tamaas: new version 2.5.0 (#31501)
* tamaas: new version 2.5.0

* tamaas: do not build/install documentation

* tamaas: hash correction for v2.5.0.post1

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-15 10:49:11 -07:00
haralmha
17b6bb9d06
gperftools: Add version 2.10 and add unwind to LDFLAGS (#31574)
* gperftools: Add version 2.10 and add unwind to LDFLAGS

* Make unwind flag conditional on libunwind variant
2022-07-15 10:34:47 -07:00
牟展佑
123c405e11
openssl: add patch for @1.1.1q. fixed issues #31545 (#31575) 2022-07-14 20:29:45 -06:00
Elizabeth Sherrock
6f46345b60
blight, fparser, typing_extensions (#31566)
* Added fparser 0.0.16

* Created package

* Change from GitHub download to pypi

* py-typing-extensions: 4.3.0

* Added py-pdoc3

* Finished adding py-blight

* Fixed typos

* Fixed dependency specs

* Fixed some things after PR review

* Added @woodruffw as blight maintainer

* Removed maintainer comment block from pdoc3
2022-07-14 17:13:47 -06:00
Erik Schnetter
49ae847c6c
snappy: Update to version 1.1.9 (#31578) 2022-07-14 16:53:46 -06:00
Jen Herting
875b032151
[py-tensorflow-hub] full_index=1 caused checksum change (#31585) 2022-07-14 11:47:30 -07:00
snehring
c7e49ea5a0
interproscan: new version 5.56-89.0 (#31565)
* interproscan: new version 5.56-89.0

* interproscan: add maintainer
2022-07-14 09:53:12 -07:00
Adam J. Stewart
a1f07b68a8
py-statsmodels: add v0.13.2 (#31571) 2022-07-14 09:30:43 -07:00
Axel Huebl
c4efeab976
ADIOS2: 2.8.2 (#31564)
Add the latest ADIOS2 release.
2022-07-14 03:17:38 -06:00
Stephen Sachs
d25315c2f6
Add package py-devito and it's dependencies (#31495)
* [py-devito] Add package

Also add dependencies:
- py-nbval
- py-cgen
- py-codepy
- py-contexttimer
- py-pyrevolve

* [py-devito] Fix some typos

* [py-devito] Fix: include examples directory

Upstream issue: https://github.com/devitocodes/devito/issues/1954

* [py-devito] clean up

* [py-devito] clean up dependency packages

* [py-devito] flake8: line too long

* Address @adamjstewart comments

* Make flake8 happy

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-13 13:12:28 -07:00
Jonathon Anderson
8e00aa7c79
m4: Add build dependency on diffutils (#31232) 2022-07-13 22:02:17 +02:00
Adam J. Stewart
752697add2
GDAL: CMake support and dependency variants (#31197)
Add support for CMake builds while preserving autotools support
for older versions of GDAL

* Add GDAL 3.5.0
* Remove GDAL 1
* Add support for new CMake build system
* Change defaults to build all recommended dependencies
* Simplify Autotools flag handling
* Determine version range for drivers
2022-07-13 11:58:39 -07:00
Ben Darwin
f7ed9092e5
ants: add version 2.4.0 (#31562) 2022-07-13 17:35:04 +00:00
Emil Briggs
5da8bae2a9
Add versions 4.3.0 and 4.3.1. Update boost reqs with component/versions. (#31559) 2022-07-13 10:08:29 -07:00
Erik Schnetter
a78e8bc54e
mpitrampoline: New version 4.1.2 (#31560) 2022-07-13 10:06:04 -07:00
Chris White
cdf541ac4a
Cppcheck: fix install and convert to cmake build system (#31488)
* fix cppcheck install and convert to cmake build system

* add white238 as a maintainer
2022-07-13 07:32:48 -07:00
Rémi Lacroix
0e783b2c47
ghostscript-fonts: fix URL (#31360) 2022-07-13 10:11:22 +02:00
H. Joe Lee
9c5ef2aafe
Hermes: add v0.7.0-beta, remove older versions (#31544) 2022-07-13 09:25:45 +02:00
Vicente Bolea
1f7ee4957b
vtk-m: add v1.8.0 (#31220) 2022-07-13 09:21:56 +02:00
Elizabeth Sherrock
6fbb01fe31
py-ford: add v6.1.13 (#31483) 2022-07-13 09:19:23 +02:00
Adam J. Stewart
a36c05068f
Open3D: fix build with external fmt (#31547) 2022-07-13 09:17:07 +02:00