`make_target` can be used to instruct Spack to build one of the pre-defined make
targets in the MPAS makefile. Spack will guess the targret based on the value of
`spack_fc`, but the user can overwrite the target as variant. E.g.
```
spack install mpas-model make_target=pgi-nersc
```
`precision` is used to set the `PRECISION` flag in the Makefile to {single,
double}. Default is double.
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
* Set R_LIBS_USER='' in dependent build environment
Despite R packages being installed with the --vanilla flag, which
ignores Rprofile and Renviron files, R will still set R_LIBS_USER if the
default directory exists. This could lead to pulling in packages from
that directory during the build which could cause the build to fail. To
avoid that, explicitly set R_LIB_USER='' to ensure that packages from
the HOME/R directory are not in the library path.
* Update var/spack/repos/builtin/packages/r/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* PythonPackage: add default libs/headers attributes
* Style fix
* libs and headers should be properties
* Check both platlib and include
* Fix variable reference
Building on #24639, this allows versions to be prefixed by `git.`. If a version begins `git.`, it is treated as a git ref, and handled as git commits are starting in the referenced PR.
An exception is made for versions that are `git.develop`, `git.main`, `git.master`, `git.head`, or `git.trunk`. Those are assumed to be greater than all other versions, as those prefixed strings are in other contexts.
This commit adds some changes which improve use of Spack-installed
oneAPI packages with Spack-generated modules, but not within Spack
(e.g. if you install some of these packages with Spack, then load
their associated modules to build other packages outside of Spack).
The majority of the PR diff is refactoring. The functional changes
are:
* intel-oneapi-mkl:
* setup_run_environment: update Intel compiler flags to RPATH the
mkl libs
* intel-oneapi-compilers: update the compiler configuration to RPATH
libraries installed by this package (note that Spack already handled
this when installing dependent packages with Spack, but this is
specifically to use the intel-oneapi-compilers package outside
of Spack). Specifically:
* inject_rpaths: this modifies the binaries installed as part of
the intel-oneapi-compilers package to RPATH libraries provided
by this package
* extend_config_flags: this instructs the compiler executables
provided by this package to RPATH those same libraries
Refactoring includes:
* intel-oneapi-compilers: in addition to the functional changes,
a large portion of this diff is reorganizing the creation of
resources/archives downloaded for the install
* The base oneAPI package renamed component_path, so several packages
changed as a result:
* intel-oneapi-dpl
* intel-oneapi-dnn
* extrae
* intel-oneapi-mpi:
* Perform file filtering in one pass rather than two
nvc doesn't know this flag: `-Wno-unknown-pragmas`, it doesn't hurt to
remove the specific warning flags, from:
```
-O3 -Wall -Wextra -Wno-unknown-pragmas -Wcast-qual
```
to:
```
-O3 -Wall
```
* Add the rocm tag to packages from the Radeon Open Compute Platform.
* Added more packages from the ROCm software distribution based on
reviewer feedback.
* Updated tags based on reviewer feedback
* add first version of py-pyrr package
* added license
* update license HEADER
* Remove preferred as there is only one version available
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Better specify dependency type
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove useless variable license
Co-authored-by: Jérôme Dubois <jerome.dubois@cea.fr>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add missing '?full_index=1' to meson 9850.patch URL
* Correct checksum
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
os.path.dirname was being used to compare compilers. If two compilers
are in the same directory then it will pick up the first one it encounters.
Compare the full compiler path instead.
When installing setuptools from sources in Spack, we might
get into weird failures due to the way we use pip.
In particular, for Spack it's necessary to install in a
non-isolated pip environment to allow using PYTHONPATH as a
selection method for all the build requirements of a
Python package.
This can fail when installing setuptools since there might
be a setuptools version already installed for the Python
interpreter being used, with different entry points than
the one we want to install.
Installing from wheels both pip and setuptools should
harden our installation procedure in the context of:
- Bootstrapping Python dependencies of Spack
- Using external Python packages
On Cray systems that use Cray Data Virtualization Service (DVS),
symlinks across filesystems are not allowed, either due to a bug, or
because they're simply not POSIX compliant [1].
Spack's OpenSSL package defaults to `certs=system` which comes down to
symlinking `/etc/ssl` in the Spack install prefix, triggering this
problem, resulting in mysterious installation failures.
Instead of relying on system certs, we can just use
`ca-certificates-mozilla`, and if users really need system certs, then
they're probably better off marking OpenSSL entirely as external.
[1] https://github.com/glennklockwood/cray-dvs
* Created package and added description
* Add py-markdown-include
* Created package
* Finished creating package
* Added py-md-environ
* Added build dependencies
* Added other deps
* Add python-markdown-math (#4)
* Created package and started to add info
* Removed unneeded global/install options
* Figured out version spec for markdown-math
* Removed type=build from unnecessary dependencies
* Removed unneeded install/global options, added version spec to dependency
* Added wscullin as interim maintainer for packages
* Fixed style issues
* Took care of trailing whitespace
* Removed comment line before imports
* Changed file charset to match other packages
* Update var/spack/repos/builtin/packages/py-ford/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-ford/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removed test dependency after review feedback
* Added new 6.1.12 version to py-ford
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add LevelZero variant to hwloc package
This permits the hwloc package to build with with support for the
Intel Level Zero low-level layer, analogous to CUDA, ROCm, and OpenCL.
* Fix typo
Add variant +gssapi to enable authentication via Kerberos through GSSAPI
When openssh is installed at sites using Kerberos, openssh needs to auth
via Kerberos through GSSAPI in order to work in such environments.
* Update h5bench maintainers and versions
* Include version 1.1 for h5bench
* Correct release hash and set default version
* Update .tar.gz version
* Update HDF5 VOL async version and environment variable syntax
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize
* adding gptune package
* minor fix for macos spack test
* update patch for py-scikit-optimize; update test files for gptune
* fixing gptune package style error
* fixing unit tests
* a few changes reviewed in the PR
* improved gptune package.py with a few newly added/improved dependencies
* fixed a few style errors
* minor fix on package name py-pyro4
* fixing more style errors
* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* resolved a few issues in the PR
* fixing file permissions
* a few minor changes
* style correction
* minor correction to jq package file
* Update var/spack/repos/builtin/packages/py-pyro4/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fixing a few issues in the PR
* adding py-selectors34 required by py-pyro4
* improved the superlu-dist package
* improved the superlu-dist package
* moree changes to gptune and py-selectors34 based on the PR
* Update var/spack/repos/builtin/packages/py-selectors34/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi
* fixing style issue of gptune
* changing file mode
* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant
* fixing style error
* corrected pddrive_spawn path in gptune test; enforcing gcc>7
* fixing style error
* setting environment variables when loading gptune
* removing debug print in hypre/package.py
* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR
* changing site_packages_dir to python_platlib
* not using python3.9 for py-gpy, which causes due to dropped support of tp_print
* more replacement of site_packages_dir
* fixing a few dependencies in gptune; added a gptune version
* adding url for gptune
* minor correction of gptune
* updating versions in butterflypack
* added a version for openturns
* added a url for openturns
* minor fix for openturns
* Update var/spack/repos/builtin/packages/openturns/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* added version2.1.1 for butterflypack
* fixing a tag in butterflypack
* minor fix for superlu-dist
* removed file filter for superlu-dist
* Update var/spack/repos/builtin/packages/superlu-dist/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* superlu-dist: add version detection for the testing; removing unused lines
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* nfft, pnfft: fix detection of fftw variants (precision)
* nfft, pnfft: use fftw's selected_precisions; avoid repetitive calls to spec
Co-authored-by: Martin Lang <martin.lang@mpsd.mpg.de>
* [py-sentry-sdk] audited dependencies and relisted extras as variants
* [py-sentry-sdk] added version 1.5.5
* [py-sentry-sdk] flake8
* [py-sentry-sdk]
- added "descriptions" to variants
- removed conflicts
- replaced with when statements in varients
