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Author SHA1 Message Date
Wouter Deconinck
17ede26cea flatbufffers: patches are in v2.0.0 (#30492) 2022-05-05 10:14:10 +02:00
SXS Bot
8bcccbeac7 spectre: add v2022.05.05 (#30493) 
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2022-05-05 09:49:25 +02:00
Greg Becker
e6346eb033 spack external find: add search path customization (#30479) 2022-05-05 08:59:44 +02:00
Seth R. Johnson
a5d06325e7 qt: fix ~opengl and use_spack_dep (#30487) 2022-05-04 22:41:37 -04:00
Dan Bonachea
9bb23a7f46 UPC++: minor packaging improvements (#30482) 
* upcxx: Add `spack external find` support

* upcxx: Minor tweaks to Shasta support
 2022-05-04 15:27:21 -07:00
Andrea Valenzuela
5a434cb840 Add scitokens-cpp recipe and also as a variant for xrootd (#30362) 
* Add scitokens-cpp recipe

* Add scitokens-cpp variant in xrootd

* Fix typo

* Fix flake8 style errors

* Update license date

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-05-04 13:03:50 -07:00
iarspider
0be5dea13f Fix professor recipe (#30002) 
* [WIP] Cleanup professor dependencies

* Add dependency on ROOT
* Remove direct dependency on wxwidgets
    * `prof-I` tool requires matplotlib with wxwidgets backend, made that optional

* Update package.py

* Update package.py (#38)

* Update package.py

* Update package.py
 2022-05-04 11:19:43 -07:00
David
b6f2a70f7b Update gtk-doc depends for tce findings (#30337) 
gtk-doc can call pkg-config when used at runtime, so pkgconfig needs
to be a runtime requirement.

itstool needs to be a build-time requirement.
 2022-05-04 11:17:34 -07:00
Olivier Cessenat
0d3d1ea7d0 gxsview: vtk9 no longer builds libvtkjpeg... (#30340) 2022-05-04 11:12:49 -07:00
Andrea Valenzuela
39c4a66e5b Add checksum for py-prompt-toolkit@3.0.29 (#30330) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-05-04 11:53:53 -06:00
Carlos Bederián
0bd0ba53a3 curl: tls=mbedtls requires fPIC (#30447) 2022-05-04 10:53:33 -07:00
snehring
e24373f262 gatk: updating and expanding java dependency (#30476) 2022-05-04 17:51:44 +00:00
Adam J. Stewart
b7f33fb393 Python package: add backup BINDIR setting (#30408) 2022-05-04 10:50:18 -07:00
Chuck Atkins
250d5d2c00 qt: Assimp dependency specificationa is more nuanced (#30460) 
libassimp has been a dependency for all of 5.x but expressing that has
varied significantly throughout the 5.x lifecycle:

  v5.0:  qt3d uses internal-only libassimp
  v5.5:  external-only libassimp
  v5.6:  either internal or external libassimp via autodetection
  v5.9:  user-selectable internal-vs-external via -assimp
  v5.14: additional qtquick3d module uses -assimp
  v5.15: qtquick3d switches to the -quick3d-assimp option
    * current bug where the incorrect target is setup
 2022-05-04 13:30:15 -04:00
Sergey Kosukhin
8b0f6187e0 bugfix: fix filter_compiler_wrappers for Cray compiler (#29786) 2022-05-04 10:13:12 -07:00
Adam J. Stewart
8bf988abb9 GDAL: add v3.4.3 (#30474) 2022-05-04 16:34:17 +00:00
Bitllion
aab7dcaad9 add package: abacus (#30416) 
* add pacakge: abacus

* rename

* fix some style bugs

* update package:abacus

* fix some style bugs

* format code

* Delete a line of useless comments

* updatee abacus
 2022-05-04 09:29:08 -07:00
Mikael Simberg
5b68fa1ecb Add mimalloc package with use in HPX and pika (#30457) 
* Add mimalloc package

* Add mimalloc as allocator option to pika

* Add mimalloc as allocator option to hpx

* Set git property globally instead of per-version in pika, hpx, and mimalloc packages

Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
 2022-05-04 09:19:15 -07:00
acastanedam
4d03a2768e gpi-2_fix_deps: setup 'gawk' and 'sed' dependencies (#29740) 
Strictly, `sed` is a `build` and `run` dependency in all gpi-2
versions, whereas `gawk` is a `run` (`build` and `run`) dependency for
gpi-2 versions greater or equal (less) than 1.4.0
 2022-05-04 09:14:21 -07:00
Scott Wittenburg
6b6147d5a0 gitlab: Remove temporary storage url from all stacks (#29949) 
Gitlab pipelines run for spack already have other S3 storage locations
configured for storage of binaries, so this PR removes the redundant
per-pipeline mirror.  As a result, the "cleanup" jobs will no longer be
generated at the end of each pipeline, removing one possible point of
pipeline failure.
 2022-05-04 09:18:47 -06:00
Andrea Valenzuela
6702e87ee4 Add checksum for version 1.1.13 and update dependencies (#30470) 2022-05-04 10:08:43 -05:00
fpruvost
7ad5ca2cc3 chameleon: add maintainers information (#30472) 2022-05-04 08:57:44 -06:00
Auriane R
2418cfb79b pika: Add 0.4.0 release (#30469) 2022-05-04 16:29:30 +02:00
Ross Miller
9486c76d70 Use gccgo to bootstrap go on aarch64 (#30350) 
The go-bootstrap package doesn't work on aarch64 platforms, so the only way
to build Go is to use gccgo.

Also, some versions of gccgo have a bug that prevents them from compiling
go (see golang/go#47771), so this patch limits gcc to versions newer than
10.4.0 or 11.3.0.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-04 16:16:53 +02:00
fpruvost
dc99fe98b9 chameleon: add new package (#30368) 2022-05-04 08:09:54 -06:00
Andrea Valenzuela
cb97b25646 Add checksum for py-plac@1.3.5 (#30327) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-05-04 08:06:11 -06:00
Andrea Valenzuela
a84593a510 Add checksum for py-networkx@2.7.1 and fix python dependency (#30326) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-05-04 08:05:51 -06:00
Paul Ferrell
2f6556ea82 mesa: intel needs c99 standard specified under intel. (#30334) 2022-05-04 14:21:25 +02:00
snehring
b4213b2c60 maq: adding perl dep, addressing gcc errors (#30312) 2022-05-04 14:07:02 +02:00
lpoirel
e378d96d15 namd: place an upper bound on the charmpp dependency version (#30397) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-04 13:58:25 +02:00
Axel Huebl
715686f0ec WarpX: add v22.05 (#30467) 
Update `warpx` & `py-warpx` to the latest release, `22.05`.
 2022-05-04 00:57:42 -06:00
snehring
d0fdaf6d03 igv: changing to 'all platforms' version. Adding igvtools variant. (#30379) 2022-05-04 08:29:06 +02:00
Adam J. Stewart
b8ebaa0813 py-shapely: add v1.8.2 (#30466) 2022-05-04 07:43:52 +02:00
Massimiliano Culpo
5c7d6c6e10 Remove deprecated "--run-tests" option of "spack install" (#30461) 2022-05-04 07:43:29 +02:00
eugeneswalker
96f9a1d88b boost: fix v1.78 build with oneapi (#30463) 2022-05-03 23:29:37 -06:00
Carlos Bederián
f5eb9fb501 autodock-vina: add versions up to v1.2.3, fixes (#30443) 
* C++ package, use spack_cxx
* download from github, add 1.2.x versions
* remove patches already present in 1.1.2-boost-new release
* specify boost dependencies
 2022-05-04 06:24:15 +02:00
Paul Ferrell
dd8f533e97 paraview: add LANL/TCE used variants for Paraview (#30336) 
- Added +eyedomelighting
- Added +pagosa
- Added +fortran
- Added pandas dependency and min version
 2022-05-04 06:18:35 +02:00
Glenn Johnson
bab41de538 ncl: constrain hdf5 dependency to version 1.10 (#29607) 2022-05-03 23:11:34 -05:00
Harsh Bhatia
17c1808ef7 new package: py-pytaridx (#30444) 
* new package: pytaridx

* fixed copyright year

* Update git link

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added type in python depends

* added pypi link

* Update package.py

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-05-03 23:10:49 -05:00
snehring
157ee3458f ea-utils: new version, cleanup, and newer gcc compat (#30204) 2022-05-04 06:06:59 +02:00
dependabot[bot]
3ce8bff22e build(deps): bump docker/setup-buildx-action from 1.6.0 to 1.7.0 (#30387) 
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1.6.0 to 1.7.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](94ab11c41e...f211e3e9de)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-05-04 06:04:38 +02:00
Ethan Stam
281165693a ParaView: let paraview build its own verdict tpl (#30332) 2022-05-04 06:03:52 +02:00
eugeneswalker
f8653dfb9b mesa@22: gallium-xlib -> xlib (#30465) 2022-05-04 05:53:09 +02:00
Frank Willmore
a6589daa87 Vacuumms 1.1.1 (#30458) 
* adding updated package for vacuumms

* deprecating old version

* add link to DOI

* style: trailing whitespace

* Update var/spack/repos/builtin/packages/vacuumms/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-05-03 19:13:43 -06:00
Richard Berger
43a503c195 flcl: add new versions (#30363) 
* flcl: add new versions

* Update var/spack/repos/builtin/packages/flcl/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/flcl/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-05-03 19:01:32 -06:00
Keita Iwabuchi
1eff83990b Metall Package: add v0.20 (#30446) 
* Metall package: add dependency to GCC for build test

* Package Metall: add v.017

* Package Metall: update the package file

* Update var/spack/repos/builtin/packages/metall/package.py

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>

* Metall package: add v0.18 and v0.19

* Metall Package: add v0.20

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-05-03 16:46:04 -07:00
Lucas Frérot
17e71a675a tamaas: new package (#30449) 
* tamaas: added new package

* tamaas: passing dependency prefixes to build

* tamaas: Python 3.7 dependency

* tamaas: compiler conflicts and correct ~python

* tamaas: no newline in docstring

* tamaas: correct python build dep. when ~python
 2022-05-03 16:17:17 -07:00
Adam J. Stewart
872aa32a00 py-matplotlib: add v3.5.2 (#30459) 2022-05-03 17:06:04 -06:00
Ken Raffenetti
4c19410669 mpich: add datatype engine variant (#30257) 
Starting with MPICH 3.4, we offer different datatype engine options
(dataloop or yaksa). The default is 'auto', which will choose based on
the device configuration. Starting with MPICH 4.0, building against an
external yaksa library is supported.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-05-03 22:12:19 +02:00
Massimiliano Culpo
a5e92893d3 Simplify fixture used to test spack info (#30456) 2022-05-03 09:39:00 -07:00